[Master Index]

# Index for Toolbox in BrainStorm 2.0 (Alpha)

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### Contents

     BrainStorm Toolbox
     Version 2.0 (Alpha) 02-Nov-2004
     Contents Generated by make_contents on 02-Nov-2004 14:31:32

     Files Sorted first by Category, then alphabetical, listed with first help line.
     A * indicates the H1 line begins with the filename.

     Category: Data Processing

      bst_extractmarkersctf.m * - Extract signal block from a .ds CTF data set
      bst_readmarkerfilectf.m * - read_markerf reads the CTF markerfile MarkerFile.mrk
      covariance_plots.fig    GUI figure for covariance_plots.m
      covariance_plots.m      * - M-file for covariance_generator, covariance_plots
      ds2brainstorm.m         * - Convert a DS CTF dataset into BrainStorm format
      eeg2bs.m                * - (fnamein,fnameout,type,channel)
      extract_channels.m      * - Extract the channels to be used in this particular run
      extract_ctf_markers.m   * - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
      load_fif_apos.m         * - Load in position information from Neuromag 122 ".apos" file
      load_fif_asc.m          * - Load data from Neuromag 122 .fif file converted to ascii
      load_smf.m              * - Load a simply written SMF file into the faces vertices structure
      meg4write.m             * - WRITE CTF MEG4 file format
      mesh2brainstorm.m       * - Import .mesh tessellation files (BrainVisa interchange)
      readdsgl.m              * - Loads a BrainSuite .dsgl format tessellation file.
      readmarkerfile_ctf.m    * - Read marker information from CTF MarkerFile.mrk
      save_smf.m              * - Save out a file in a simple form of the SMF format
      tri2brainstorm.m        * - Read .tri file into BrainStorm format

     Category: Database Management

      browse_study_folder.m          * - Find all *brainstormstudy.mat files in a directory tree
      eeg_load_scan3avg.m            * - Read a NeuroScan 3.x AVG File
      elpos2bs.m                     * - this function converts electrode position files into BrainStorm Channel format
      find_mfiles.m                  * - Find m-files that open a particular figure handle or the GCF
      help_manager.fig               GUI figure for help_manager.m, bst_static_taskbar.m
      help_manager.m                 * - Application M-file for help_manager.fig
      load_brainstorm_file.m         * - load or try to find and load the BrainStorm file.
      make_default_database.m        * - Confirm or Create a default database, default study, default subject
      make_default_study.m           * - Create simulated default data and link to a simulated subject
      make_default_subject.m         * - Make a brainstormsubject and simulated MRI in a folder
      phantom_channel_assignment.fig GUI figure for phantom_channel_assignment.m, tess_align_tool.m
      phantom_channel_assignment.m   * - Application M-file for phantom_channel_assignment.fig
      read_besa.m                    * - (overwrite succinct one line summary here)

     Category: Forward Modeling

      bem_gain.m                 * - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
      bem_kernel.m               * - computes kernel matrices for EEG and MEG
      bem_xfer.m                 * - Computation of the MEG and/or EEG BEM transfer matrices
      berg.m                     * - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
      bestfitsph.m               * - Find best fitting sphere
      bst_headmodeler.m          * - Solution to the MEG/EEG forward problem
      carto_sensors.m            * - (Rcoils,v);
      eeg_bem.m                  * - Calculate the electric potential , BEM approach, arbitrary orientation
      eeg_sph.m                  * - Calculate the electric potential , spherical head, arbitrary orientation
      gain_interp.m              * - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
      get_gain.m                 * - Get a set of source foward fields from a .bin gain matrix file
      good_channel.m             * - Extract channels of a given type
      gridmaker.m                * - 3D regular gridding of surface envelope
      hrow_linear.m              * - Compute row in BEM geometry matrix for linear collocation
      kl_galerkin.m              * - Galerking kernel for BEM of linear model
      kl_gram.m                  * - Kernel computation used in bem_xfer
      meg_bem.m                  * - Calculate the mag field, BEM approach, arbitrary orientation
      os_meg.m                   * - Calculate the (overlapping) sphere models for MEG
      overlapping_sphere.m       * - Create overlapping spheres for E/MEG channels.
      overlapping_sphere_fmins.m * - for use with OVERLAPPING_SPHERE
      read_gain.m                * - Extract parts or a compete gain matrix from .bin binay gain file
      sensor_122.m               * - Return the Neuromag 122 information
      sensor_axial.m             * - Generate axial gradiometers
      sensor_planar.m            * - Generate planar gradiometers
      sensor_ring.m              * - Generate rings of sensors about a sphere roughly uniformly spaced.
      sensor_spacing.m           * - generate sites roughly evenly spaced about a hemisphere.
      solid_angle2.m             * - Solid angle of a viewed triangle
      source_grid.m              * - generate variable grid of possible source locations
      source_grids.m             * - Generate source grids for parametric model searches
      source_tess.m              * - generate variable grid of possible source locations
      tesselate.m                * - tesselate based on the sensor_ring program
      trans_matrix.m             * - calculate BEM transfer matrices for EEG and MEG
      tri_interp.m               * - Compute the interpolation matrix from a cortical tessellation to the MRI volume
      weighting_scalar.m         * - For use with Overlapping Sphere
      zhang_fit.m                * - Compute 'Berg' parameters for EEG multilayer sphere

     Category: GUI and Related

      bem_param_select.fig           GUI figure for headmodeler_gui.m
      bst_color_scheme.m             * - apply the BrainStorm color, font, size scheme to the figure
      bst_layout.m                   * - Manage all BST windows in a standard layout
      bst_message_window.fig         GUI figure for bst_message_window.m, avw2brainstorm.m, bem_gain.m, and others
      bst_message_window.m           * - Application M-file for bst_message_window.fig, with NON CALLBACKS
      bst_splashscreen.fig           GUI figure for bst_splashscreen.m, bst_static_taskbar.m
      bst_splashscreen.m             * - GUI app for license information and agreement
      bst_static_taskbar.fig         GUI figure for bst_static_taskbar.m, bst_wavedata_display.m, data_manager.m, and others
      bst_static_taskbar.m           * - BrainStorm's primary taskbar always visible
      bst_win_manager.m              * - GUI Window management for BrainStorm
      channel_select.fig             GUI figure for dataplot_cb.m
      data_manager.fig               GUI figure for data_manager.m, bst_static_taskbar.m, extract_channels.m, and others
      data_manager.m                 * - Edit/select database, subjects, studies, datasets, build headmodels, import data.
      data_selector_cb.m             * - Callback function to setup and execute inverse techniques
      database_manager.fig           GUI figure for database_manager.m, data_manager.m
      database_manager.m             * - GUI to edit the User Databases and select one
      dataplot.fig                   GUI figure for bst_imaging_display.m, bst_static_taskbar.m, bst_wavedata_display.m, and others
      dataplot_cb.m                  * - : Callback switchyard for the DATAViewer Tool
      file_selection_win.fig         GUI figure for file_selection_win.m, bst_mriviewer.m, dataplot_cb.m, and others
      file_selection_win.m           * - Application M-file for file_selection_win.fig
      generic_listbox_win.fig        GUI figure for importdata.m, subject_editor.m
      headmodeler_gui.fig            GUI figure for headmodeler_gui.m, bst_static_taskbar.m, data_manager.m, and others
      headmodeler_gui.m              * - Application M-file to build head models
      importdata.fig                 GUI figure for importdata.m, data_manager.m, ds2brainstorm.m, and others
      importdata.m                   * - Case Switchyard for importing data from major MEG and EEG systems
      layout_manager.fig             GUI figure for layout_manager.m, bst_static_taskbar.m
      layout_manager.m               * - Application M-file to manage the window layout
      least_squares_parameters.fig   GUI figure for data_selector_cb.m, least_squares_parameters_cb.m, parametric_estimation.m
      listbox_win.fig                GUI figure for importdata.m, subject_editor.m
      listchan.fig                   GUI figure for dataplot_cb.m
      logobrainstorm.jpg             Figure file
      makeuswait.m                   * - change the figure pointer according to action
      map_single.fig                 GUI figure for dataplot_cb.m
      mri_parameters.fig             GUI figure for mri_parameters.m, bst_mriviewer.m
      mri_parameters.m               * - Application M-file for mri_parameters.fig
      nowzooming.m                   * - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
      pcs_params.fig                 GUI figure for pcs_params.m, bst_mriviewer.m, mri_read_tool.m
      pcs_params.m                   * - Application M-file to set the parameters of the patient coordinates
      set_dataviewing_parameters.fig GUI figure for dataplot_cb.m
      simulator.fig                  GUI figure for simulator.m, bst_static_taskbar.m, make_default_study.m, and others
      simulator.m                    * - Application M-file for simulator.fig
      simulator_mri.fig              GUI figure for simulator_mri.m, bst_static_taskbar.m, make_default_subject.m
      simulator_mri.m                * - Application M-file to make a simulated spherical MRI
      study_editor.fig               GUI figure for study_editor.m, data_manager.m, importdata.m
      study_editor.m                 * - GUI to edit the BrainStorm Study information, case switchyard
      subject_editor.fig             GUI figure for subject_editor.m, bst_static_taskbar.m, data_manager.m, and others
      subject_editor.m               * - GUI to edit the BrainStorm Subject information, case switchyard
      tess_align_tool.fig            GUI figure for tess_align_tool.m, subject_editor.m
      tess_align_tool.m              * - Application M-file for tess_align_tool.fig
      tessellation_window.fig        GUI figure for bst_imaging_display.m, dataplot_cb.m, manage_corticalscouts.m, and others
      zscore_gui.fig                 GUI figure for zscore_gui.m, dataplot_cb.m
      zscore_gui.m                   * - : management of zscore visualization

     Category: Help

      contents.m                               This Contents File
      help_data_bststudy.m                     * - Information on database files of type 'bststudy'
      help_data_bstsubject.m                   * - Information on database files of type 'bstsubject'
      help_data_channel.m                      * - Information on database files of type 'channel'
      help_data_data.m                         * - Information on database files of type 'data'
      help_data_headmodel.m                    * - Information on database files of type 'headmodel'
      help_data_image.m                        * - Information on database files of type 'image'
      help_data_raw.m                          * - Information on database files of type 'raw'
      help_data_results.m                      * - Information on database files of type 'results'
      help_data_tess.m                         * - Information on database files of type 'tess'
      help_data_triconn.m                      * - Information on database files of type 'triconn'
      help_data_vertconn.m                     * - Information on database files of type 'vertconn'
      help_database_list.m                     * - Explain the database used by BrainStorm
      help_editing_brainstorm.m                * - Information on how to update and edit your version of BrainStorm
      help_fig_bem_param_select.m              * - Information on figure file 'bem_param_select'
      help_fig_bst_message_window.m            * - Information on figure file 'bst_message_window'
      help_fig_bst_splashscreen.m              * - Information on figure file 'bst_splashscreen'
      help_fig_bst_static_taskbar.m            * - Information on figure file 'bst_static_taskbar'
      help_fig_channel_select.m                * - Information on figure file 'channel_select'
      help_fig_chi_pdf_fit.m                   * - Information on figure file 'chi_pdf_fit'
      help_fig_covariance_generator.m          * - Information on figure file 'covariance_generator'
      help_fig_covariance_plots.m              * - Information on figure file 'covariance_plots'
      help_fig_data_manager.m                  * - Information on figure file 'data_manager'
      help_fig_data_selector.m                 * - Information on figure file 'data_selector'
      help_fig_database_manager.m              * - Information on figure file 'database_manager'
      help_fig_dataplot.m                      * - Information on figure file 'dataplot'
      help_fig_generic_listbox_win.m           * - Information on figure file 'generic_listbox_win'
      help_fig_headmodeler_gui.m               * - Information on figure file 'headmodeler_gui'
      help_fig_help_manager.m                  * - Information on figure file 'help_manager'
      help_fig_importdata.m                    * - Information on figure file 'importdata'
      help_fig_layout_manager.m                * - Information on figure file 'layout_manager'
      help_fig_least_squares_parameters.m      * - Information on figure file 'least_squares_parameters'
      help_fig_listbox_win.m                   * - Information on figure file 'listbox_win'
      help_fig_listchan.m                      * - Information on figure file 'listchan'
      help_fig_manage_corticalscouts.m         * - Information on figure file 'manage_corticalscouts'
      help_fig_map_single.m                    * - Information on figure file 'map_single'
      help_fig_mapping.m                       * - Information on figure file 'mapping'
      help_fig_markers_select.m                * - Information on figure file 'markers_select'
      help_fig_minnorm_parameters.m            * - Information on figure file 'minnorm_parameters'
      help_fig_mri_read_tool.m                 * - Information on figure file 'mri_read_tool'
      help_fig_mri_scan_params.m               * - Information on figure file 'mri_scan_params'
      help_fig_mribox.m                        * - Information on figure file 'mribox'
      help_fig_parametric_estimation.m         * - Information on figure file 'parametric_estimation'
      help_fig_pcs_params.m                    * - Information on figure file 'pcs_params'
      help_fig_rap_music_parameters.m          * - Information on figure file 'rap_music_parameters'
      help_fig_rap_parameters.m                * - Information on figure file 'rap_parameters'
      help_fig_results_time_series.m           * - Information on figure file 'results_time_series'
      help_fig_results_update_gui.m            * - Information on figure file 'results_update_gui'
      help_fig_results_visualization.m         * - Information on figure file 'results_visualization'
      help_fig_select_folder.m                 * - Information on figure file 'select_folder'
      help_fig_set_dataviewing_parameters.m    * - Information on figure file 'set_dataviewing_parameters'
      help_fig_set_sourceviewing_parameters.m  * - Information on figure file 'set_sourceviewing_parameters'
      help_fig_show_signal_decomposition.m     * - Information on figure file 'show_signal_decomposition'
      help_fig_simulator.m                     * - Information on figure file 'simulator'
      help_fig_simulator_mri.m                 * - Information on figure file 'simulator_mri'
      help_fig_sourceimaging.m                 * - Information on figure file 'sourceimaging'
      help_fig_sourceimaging_parameters.m      * - Information on figure file 'sourceimaging_parameters'
      help_fig_study_editor.m                  * - Information on figure file 'study_editor'
      help_fig_subject_editor.m                * - Information on figure file 'subject_editor'
      help_fig_taskbar.m                       * - Information on figure file 'taskbar'
      help_fig_tessellation_handler.m          * - Information on figure file 'tessellation_handler'
      help_fig_tessellation_select.m           * - Information on figure file 'tessellation_select'
      help_fig_tessellation_window.m           * - Information on figure file 'tessellation_window'
      help_fig_timeseries.m                    * - Information on figure file 'timeseries'
      help_fig_view_manager.m                  * - Information on figure file 'view_manager'
      help_fig_visu_maps.m                     * - Information on figure file 'visu_maps'
      help_fig_wave_single.m                   * - Information on figure file 'wave_single'
      help_fig_web_pages.m                     * - Information on figure file 'web_pages'
      help_fig_zscore_gui.m                    * - Information on figure file 'zscore_gui'
      help_figure_list.m                       * - Explain the figures used by BrainStorm
      help_pref_currentdata.m                  * - Preference information on structure of 'CurrentData'
      help_pref_dateofagreement.m              * - Preference information on structure of 'DateofAgreement'
      help_pref_defaultsubject.m               * - Preference information on structure of 'DefaultSubject'
      help_pref_iuserdatabase.m                * - Preference information on structure of 'iUserDataBase'
      help_pref_layout.m                       * - Preference information on structure of 'Layout'
      help_pref_studies.m                      * - Preference information on structure of 'Studies'
      help_pref_studysubject.m                 * - Preference information on structure of 'StudySubject'
      help_pref_subjects.m                     * - Preference information on structure of 'Subjects'
      help_pref_usercurrentdata.m              * - Preference information on structure of 'UserCurrentData'
      help_pref_userdatabase.m                 * - Preference information on structure of 'UserDataBase'
      help_pref_version.m                      * - Preference information on structure of 'Version'
      help_preference_list.m                   * - Explain the preferences used by BrainStorm
      montreal_data_create.m                   * - Read landmarks from the Montreal Phantom and create simulated data
      multidipole_simulation_eeg_data_create.m  MONTREAL_DATA_CREATE - Create simulated EEG data using EGI array
      readme.m                                 * - What's New in Each Revision of BrainStorm 2.0 (Alpha)

     Category: Inverse Modeling

      bst_sourceimaging.m              * - Command line call to source imaging routines
      bstscript_ForwardInverse_basic.m * - Basic Head Modelling and Source Imaging BrainStorm Script
      data_selector.fig                GUI figure for bst_sourceimaging.m, data_selector_cb.m, parametric_estimation.m
      lcmvbf.fig                       GUI figure for lcmvbf.m, bst_sourceimaging.m, dataplot_cb.m
      lcmvbf.m                         * - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
      least_squares_fit.m              * - multiple dipole fit using fminsearch
      least_squares_parameters_cb.m    * - least_squares GUI setup and execution
      minnorm.m                        * - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
      minnorm_parameters_cb.m          * - Minimum Norm GUI setup and execution
      muopt.m                          * - Quasi-optimality criterion for choosing the regularization parameter.
      parametric_estimation.fig        GUI figure for parametric_estimation.m, bst_static_taskbar.m, dataplot_cb.m, and others
      parametric_estimation.m          * - GUI for selecting data segments and subspaces prior to estimation
      rap_music_parameters.fig         GUI figure for rap_music_parameters.m, bst_static_taskbar.m, dataplot_cb.m, and others
      rap_music_parameters.m           * - Application M-file for rap_music_parameters.fig
      rapmusic_gui.m                   * - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
      regcheck.m                       * - Check the regularization tag
      regsubspace.m                    * - Determine the subspace based on the regularization method
      subcorr_gui.m                    * - Subcorr function custom to the gui features

     Category: Utility - General

      avw2brainstorm.m            * - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
      brainstorm.m                * - Go to the BrainStorm home web page
      brainstorm_reset.m          * - Clear Matlab BrainStorm preferences, remove default data
      dip.m                       * - UNKNOWN, move to archive?
      engstr.m                    * - create a string for the number in engineering format
      find_brainstorm_files.m     * - Find BrainStorm subjects or study files, create Menu
      find_brainstorm_structure.m * - Find all of the available files with a subject or study
      find_subdir.m               * - Find all subdirectories in a BrainStorm path
      genpath2cell.m              * - convert path or generated path string into cell array
      get_channel.m               * - Get the Channel information associated with a particular data file
      get_user_directory.m        * - Get the user's root directory information
      ginput2.m                   * - Graphical input from mouse.
      grayish.m                   * - % gray out the lower end of a spectrum for less severe palette
      load_raw.m                  * - Read a BrainStorm "raw" format (.txt or .raw) matrix
      make_contents.mat           Mat-file
      mby3check.m                 * - Check to see if matrix is m by 3 or 3 by m.
      mby6check.m                 * - Check to see if matrix is m by 6 or 6 by m.
      meg4read.m                  * - READ CTF MEG4 file format
      mutincomp.m                 * - Mutual incompatibility among checkboxes and radiobuttons
      norcol.m                    * - (French) squared sum of each column in a matrix
      norlig.m                    * - (French) Norm of the rows of a matrix
      offset.m                    * - each column in inmat such that a plot(outmat) looks good.
      qslim.m                     * - Mesh simplification, wrapper function for Garland's QSLIM executable program
      read_ctf_mri.m              * - Read CTF MRI format (Version 2.1)
      readdfs.m                   * - (overwrite succinct one line summary here)
      readRaw.m                   * - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
      save_fieldnames.m           * - Save just the fieldnames of a structure to a mat-file
      save_raw.m                  * - Save out a matrix in BrainStorm "raw" format, based on extension
      select_folder.fig           GUI figure for select_folder.m, database_manager.m
      select_folder.m             * - Application M-file for bst_SelectFolder.fig
      str2mat0.m                  * - (Deprecated) Form text matrix from individual strings.
      str_repeater.m              * - Repeat string format and separator to display data
      vec.m                       * - Lexicographical ordering of a matrix, A(:).
      web_pages.fig               GUI figure for web_pages.m, bst_static_taskbar.m
      web_pages.m                 * - Listbox of relevant BrainStorm web pages and email addresses
      windclf.m                   * - Reset and clear the figure, retaining the NAME property
      windfind.m                  * - Find or create a particular window using it's NAME property

     Category: Utility - Numeric

      aic_mdl.m                * - Calculate Information Theoretic Criteria for data dimensionality
      blk_diag.m               * - Make or extract a sparse block diagonal matrix
      blk_lex.m                * - Lexicographically order the submatrices in A
      brainstorm_filt.m        * - Zero-phase filter dedicated to multi-channel MEG and EEG data
      carto_sph.m              * - (sensloc,v,center)
      chi_pdf_fit.fig          GUI figure with unknown calls
      closest.m                * - Find point in one array closest to point in another array
      colnorm.m                * - Calculate L2 norm for each column of a matrix and normalize
      covariance_generator.fig GUI figure with unknown calls
      cross_mat.m              * - Sparse cross product matrix good for matrix equivalent operation
      crossprod.m              * - Cross product between two sets, each set with three columns
      dist_sph.m               * - FMINS distance function used to minimize the fit to a sphere
      dlegpoly.m               * - Evaluate the first N Legendre polynomials
      dotprod.m                * - Dot product of two vectors (deprecated)
      embedding.m              * - computing the approximate embedding surface
      fidufit.m                * - (overwrite succinct one line summary here)
      findclosest.m            * - Find entries of closest elements between two vectors
      fronorm.m                * - Fast calculation of the Frobenius Norm of a Matrix
      hanning_window.m         * - Calculate the hanning window function for n points
      inorcol.m                * - Compute the (pseudo)inverse of the column norms of matrix Mat
      modulo.m                 * - Compute the modulo
      mri2scs.m                * - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
      ray_intersect.m          * - find intersection of a ray with a set of faces
      rownorm.m                * - Calculate the L2 norm of each row of a matrix
      scs2mri.m                * - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
      shepards.m               * - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
      sort_key.m               * - Sort with column keys
      svd0.m                   * - Economy SVD in both U and V, S returned sparse diagonal
      tessellation_stats.m     * - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
      transform.m              * - Transform coordinates between PCS and MRI
      tri_area.m               * - Find areas of all triangles

     Category: Visualization

      bst_imaging_display.m            * - : display utility for cortical distributed source imaging
      bst_mriviewer.fig                GUI figure for bst_mriviewer.m, bst_static_taskbar.m, dataplot_cb.m, and others
      bst_mriviewer.m                  * - Application M-file for bst_mriviewer.fig
      bst_wavedata_display.m           * - Various ways of loooking at time series
      c_activ.m                        * - Finding a colormap to code deepness and activation
      catci.m                          * - computing color coding for activation on the vertices
      contraste.m                      * - computing the colormap coding deepness
      curvature_cortex.m               * - calculates cortex curvature
      depthgauge.m                     * - Make a depthgauge for measuring depth
      faces_connectivity.m             * - Generate the connections of faces to a vertex
      filterGUI.fig                    GUI figure for filterGUI.m, dataplot_cb.m
      filterGUI.m                      * - M-file for filterGUI.fig
      ihot.mat                         Mat-file
      interp_mail.m                    * - (French) Interpolate coordinates of the "maillage"
      leaflet.m                        * - (overwrite succinct one line summary here)
      leaflet.mat                      Mat-file
      load_BsTMRI.m                    * - Load BrainStorm MRI format
      manage_corticalscouts.fig        GUI figure for manage_corticalscouts.m, dataplot_cb.m
      manage_corticalscouts.m          * - Application M-file for manage_corticalscouts.fig
      mapping.fig                      GUI figure for bst_imaging_display.m, bst_mriviewer.m, bst_wavedata_display.m, and others
      markers_select.fig               GUI figure with unknown calls
      mri_read_tool.fig                GUI figure for mri_read_tool.m, bst_static_taskbar.m, make_default_subject.m, and others
      mri_read_tool.m                  * - AOS Version Application M-file to read in MRI and manipulate
      mribox.fig                       GUI figure for mritool_cb.m
      mritool_cb.m                     * - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
      patch_swell.m                    * - enlarge a patch by appending the next set of adjacent vertices
      plot3d.m                         * - 'plot3' the given three column data
      plot_dipole.m                    * - (r,n,s,c)
      plot_patch.m                     * - plots a vertex or face and its neighbors
      results_time_series.fig          GUI figure for results_time_series.m, rapmusic_gui.m
      results_time_series.m            * - Application M-file for results_time_series.fig
      results_update.m                 * - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
      results_update_gui.fig           GUI figure for results_update.m
      results_visualization.fig        GUI figure for results_visualization.m, bst_static_taskbar.m, rapmusic_gui.m, and others
      results_visualization.m          * - Application M-file View the results of source modeling
      separation.m                     * - Splitting the brain into 2 parts
      set_sourceviewing_parameters.fig GUI figure for set_sourceviewing_parameters.m, dataplot_cb.m
      set_sourceviewing_parameters.m   * - Application M-file for set_sourceviewing_parameters.fig
      show_signal_decomposition.fig    GUI figure for show_signal_decomposition.m
      show_signal_decomposition.m      * - Application M-file for show_signal_decomposition.fig
      smooth_cortex.m                  * - Smoothes tesselation
      sourceimaging.fig                GUI figure for sourceimaging.m, bst_sourceimaging.m, bst_static_taskbar.m, and others
      sourceimaging.m                  * - Main switch to source imaging routines
      sourceimaging_parameters.fig     GUI figure with unknown calls
      tessellation_handler.fig         GUI figure for tessellation_handler.m, set_sourceviewing_parameters.m
      tessellation_handler.m           * - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
      tessellation_outwards.m          * - Ensure that tessellation ordering is "outwards"
      togglebuttoncolor.m              * - : change button color of toggle button
      toggleface.m                     * - Toggle the faces and edges as invisible
      togglelight.m                    * - toggle the lighting flat or phong
      vertices_connectivity.m          * - Generate the connections between vertices
      view_surface.m                   * - Convenient function to consistently plot surfaces
      visu_maps.fig                    GUI figure with unknown calls
      warp_everything_bst.m             WARP_EVERYTHING - (summary line here)
      wave_single.fig                  GUI figure with unknown calls

     Category: All Alphabetical

      aic_mdl.m                                * - Calculate Information Theoretic Criteria for data dimensionality
      avw2brainstorm.m                         * - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
      bem_gain.m                               * - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
      bem_kernel.m                             * - computes kernel matrices for EEG and MEG
      bem_param_select.fig                     GUI figure for headmodeler_gui.m
      bem_xfer.m                               * - Computation of the MEG and/or EEG BEM transfer matrices
      berg.m                                   * - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
      bestfitsph.m                             * - Find best fitting sphere
      blk_diag.m                               * - Make or extract a sparse block diagonal matrix
      blk_lex.m                                * - Lexicographically order the submatrices in A
      brainstorm.m                             * - Go to the BrainStorm home web page
      brainstorm_filt.m                        * - Zero-phase filter dedicated to multi-channel MEG and EEG data
      brainstorm_reset.m                       * - Clear Matlab BrainStorm preferences, remove default data
      browse_study_folder.m                    * - Find all *brainstormstudy.mat files in a directory tree
      bst_cactivcmap.mat                       Mat-file
      bst_color_scheme.m                       * - apply the BrainStorm color, font, size scheme to the figure
      bst_extractmarkersctf.m                  * - Extract signal block from a .ds CTF data set
      bst_headmodeler.m                        * - Solution to the MEG/EEG forward problem
      bst_imaging_display.m                    * - : display utility for cortical distributed source imaging
      bst_layout.m                             * - Manage all BST windows in a standard layout
      bst_message_window.fig                   GUI figure for bst_message_window.m, avw2brainstorm.m, bem_gain.m, and others
      bst_message_window.m                     * - Application M-file for bst_message_window.fig, with NON CALLBACKS
      bst_mriviewer.fig                        GUI figure for bst_mriviewer.m, bst_static_taskbar.m, dataplot_cb.m, and others
      bst_mriviewer.m                          * - Application M-file for bst_mriviewer.fig
      bst_readmarkerfilectf.m                  * - read_markerf reads the CTF markerfile MarkerFile.mrk
      bst_sourceimaging.m                      * - Command line call to source imaging routines
      bst_splashscreen.fig                     GUI figure for bst_splashscreen.m, bst_static_taskbar.m
      bst_splashscreen.m                       * - GUI app for license information and agreement
      bst_static_taskbar.fig                   GUI figure for bst_static_taskbar.m, bst_wavedata_display.m, data_manager.m, and others
      bst_static_taskbar.m                     * - BrainStorm's primary taskbar always visible
      bst_wavedata_display.m                   * - Various ways of loooking at time series
      bst_win_manager.m                        * - GUI Window management for BrainStorm
      bstscript_ForwardInverse_basic.m         * - Basic Head Modelling and Source Imaging BrainStorm Script
      c_activ.m                                * - Finding a colormap to code deepness and activation
      carto_sensors.m                          * - (Rcoils,v);
      carto_sph.m                              * - (sensloc,v,center)
      catci.m                                  * - computing color coding for activation on the vertices
      channel_select.fig                       GUI figure for dataplot_cb.m
      chi_pdf_fit.fig                          GUI figure with unknown calls
      closest.m                                * - Find point in one array closest to point in another array
      colnorm.m                                * - Calculate L2 norm for each column of a matrix and normalize
      contents.m                               This Contents File
      contraste.m                              * - computing the colormap coding deepness
      covariance_generator.fig                 GUI figure with unknown calls
      covariance_plots.fig                     GUI figure for covariance_plots.m
      covariance_plots.m                       * - M-file for covariance_generator, covariance_plots
      cpot.m                                   * - UNKNOWN, Send to Archive?
      cross_mat.m                              * - Sparse cross product matrix good for matrix equivalent operation
      crossprod.m                              * - Cross product between two sets, each set with three columns
      curvature_cortex.m                       * - calculates cortex curvature
      data_manager.fig                         GUI figure for data_manager.m, bst_static_taskbar.m, extract_channels.m, and others
      data_manager.m                           * - Edit/select database, subjects, studies, datasets, build headmodels, import data.
      data_selector.fig                        GUI figure for bst_sourceimaging.m, data_selector_cb.m, parametric_estimation.m
      data_selector_cb.m                       * - Callback function to setup and execute inverse techniques
      database_manager.fig                     GUI figure for database_manager.m, data_manager.m
      database_manager.m                       * - GUI to edit the User Databases and select one
      dataplot.fig                             GUI figure for bst_imaging_display.m, bst_static_taskbar.m, bst_wavedata_display.m, and others
      dataplot_cb.m                            * - : Callback switchyard for the DATAViewer Tool
      depthgauge.m                             * - Make a depthgauge for measuring depth
      dip.m                                    * - UNKNOWN, move to archive?
      dist_sph.m                               * - FMINS distance function used to minimize the fit to a sphere
      dlegpoly.m                               * - Evaluate the first N Legendre polynomials
      dotprod.m                                * - Dot product of two vectors (deprecated)
      ds2brainstorm.m                          * - Convert a DS CTF dataset into BrainStorm format
      eeg2bs.m                                 * - (fnamein,fnameout,type,channel)
      eeg_bem.m                                * - Calculate the electric potential , BEM approach, arbitrary orientation
      eeg_load_scan3avg.m                      * - Read a NeuroScan 3.x AVG File
      eeg_sph.m                                * - Calculate the electric potential , spherical head, arbitrary orientation
      elpos2bs.m                               * - this function converts electrode position files into BrainStorm Channel format
      embedding.m                              * - computing the approximate embedding surface
      engstr.m                                 * - create a string for the number in engineering format
      extract_channels.m                       * - Extract the channels to be used in this particular run
      extract_ctf_markers.m                    * - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
      faces_connectivity.m                     * - Generate the connections of faces to a vertex
      fidufit.m                                * - (overwrite succinct one line summary here)
      fidufit.mat                              Mat-file
      file_selection_win.fig                   GUI figure for file_selection_win.m, bst_mriviewer.m, dataplot_cb.m, and others
      file_selection_win.m                     * - Application M-file for file_selection_win.fig
      filterGUI.fig                            GUI figure for filterGUI.m, dataplot_cb.m
      filterGUI.m                              * - M-file for filterGUI.fig
      find_brainstorm_files.m                  * - Find BrainStorm subjects or study files, create Menu
      find_brainstorm_structure.m              * - Find all of the available files with a subject or study
      find_mfiles.m                            * - Find m-files that open a particular figure handle or the GCF
      find_subdir.m                            * - Find all subdirectories in a BrainStorm path
      findclosest.m                            * - Find entries of closest elements between two vectors
      fronorm.m                                * - Fast calculation of the Frobenius Norm of a Matrix
      gain_interp.m                            * - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
      generic_listbox_win.fig                  GUI figure for importdata.m, subject_editor.m
      genpath2cell.m                           * - convert path or generated path string into cell array
      geom100.mat                              Mat-file
      get_channel.m                            * - Get the Channel information associated with a particular data file
      get_gain.m                               * - Get a set of source foward fields from a .bin gain matrix file
      get_user_directory.m                     * - Get the user's root directory information
      ginput2.m                                * - Graphical input from mouse.
      good_channel.m                           * - Extract channels of a given type
      grayish.m                                * - % gray out the lower end of a spectrum for less severe palette
      gridmaker.m                              * - 3D regular gridding of surface envelope
      hanning_window.m                         * - Calculate the hanning window function for n points
      headmodeler_gui.fig                      GUI figure for headmodeler_gui.m, bst_static_taskbar.m, data_manager.m, and others
      headmodeler_gui.m                        * - Application M-file to build head models
      help_data_bststudy.m                     * - Information on database files of type 'bststudy'
      help_data_bstsubject.m                   * - Information on database files of type 'bstsubject'
      help_data_channel.m                      * - Information on database files of type 'channel'
      help_data_data.m                         * - Information on database files of type 'data'
      help_data_headmodel.m                    * - Information on database files of type 'headmodel'
      help_data_image.m                        * - Information on database files of type 'image'
      help_data_raw.m                          * - Information on database files of type 'raw'
      help_data_results.m                      * - Information on database files of type 'results'
      help_data_tess.m                         * - Information on database files of type 'tess'
      help_data_triconn.m                      * - Information on database files of type 'triconn'
      help_data_vertconn.m                     * - Information on database files of type 'vertconn'
      help_database_list.m                     * - Explain the database used by BrainStorm
      help_editing_brainstorm.m                * - Information on how to update and edit your version of BrainStorm
      help_fig_bem_param_select.m              * - Information on figure file 'bem_param_select'
      help_fig_bst_message_window.m            * - Information on figure file 'bst_message_window'
      help_fig_bst_splashscreen.m              * - Information on figure file 'bst_splashscreen'
      help_fig_bst_static_taskbar.m            * - Information on figure file 'bst_static_taskbar'
      help_fig_channel_select.m                * - Information on figure file 'channel_select'
      help_fig_chi_pdf_fit.m                   * - Information on figure file 'chi_pdf_fit'
      help_fig_covariance_generator.m          * - Information on figure file 'covariance_generator'
      help_fig_covariance_plots.m              * - Information on figure file 'covariance_plots'
      help_fig_data_manager.m                  * - Information on figure file 'data_manager'
      help_fig_data_selector.m                 * - Information on figure file 'data_selector'
      help_fig_database_manager.m              * - Information on figure file 'database_manager'
      help_fig_dataplot.m                      * - Information on figure file 'dataplot'
      help_fig_generic_listbox_win.m           * - Information on figure file 'generic_listbox_win'
      help_fig_headmodeler_gui.m               * - Information on figure file 'headmodeler_gui'
      help_fig_help_manager.m                  * - Information on figure file 'help_manager'
      help_fig_importdata.m                    * - Information on figure file 'importdata'
      help_fig_layout_manager.m                * - Information on figure file 'layout_manager'
      help_fig_least_squares_parameters.m      * - Information on figure file 'least_squares_parameters'
      help_fig_listbox_win.m                   * - Information on figure file 'listbox_win'
      help_fig_listchan.m                      * - Information on figure file 'listchan'
      help_fig_manage_corticalscouts.m         * - Information on figure file 'manage_corticalscouts'
      help_fig_map_single.m                    * - Information on figure file 'map_single'
      help_fig_mapping.m                       * - Information on figure file 'mapping'
      help_fig_markers_select.m                * - Information on figure file 'markers_select'
      help_fig_minnorm_parameters.m            * - Information on figure file 'minnorm_parameters'
      help_fig_mri_read_tool.m                 * - Information on figure file 'mri_read_tool'
      help_fig_mri_scan_params.m               * - Information on figure file 'mri_scan_params'
      help_fig_mribox.m                        * - Information on figure file 'mribox'
      help_fig_parametric_estimation.m         * - Information on figure file 'parametric_estimation'
      help_fig_pcs_params.m                    * - Information on figure file 'pcs_params'
      help_fig_rap_music_parameters.m          * - Information on figure file 'rap_music_parameters'
      help_fig_rap_parameters.m                * - Information on figure file 'rap_parameters'
      help_fig_results_time_series.m           * - Information on figure file 'results_time_series'
      help_fig_results_update_gui.m            * - Information on figure file 'results_update_gui'
      help_fig_results_visualization.m         * - Information on figure file 'results_visualization'
      help_fig_select_folder.m                 * - Information on figure file 'select_folder'
      help_fig_set_dataviewing_parameters.m    * - Information on figure file 'set_dataviewing_parameters'
      help_fig_set_sourceviewing_parameters.m  * - Information on figure file 'set_sourceviewing_parameters'
      help_fig_show_signal_decomposition.m     * - Information on figure file 'show_signal_decomposition'
      help_fig_simulator.m                     * - Information on figure file 'simulator'
      help_fig_simulator_mri.m                 * - Information on figure file 'simulator_mri'
      help_fig_sourceimaging.m                 * - Information on figure file 'sourceimaging'
      help_fig_sourceimaging_parameters.m      * - Information on figure file 'sourceimaging_parameters'
      help_fig_study_editor.m                  * - Information on figure file 'study_editor'
      help_fig_subject_editor.m                * - Information on figure file 'subject_editor'
      help_fig_taskbar.m                       * - Information on figure file 'taskbar'
      help_fig_tessellation_handler.m          * - Information on figure file 'tessellation_handler'
      help_fig_tessellation_select.m           * - Information on figure file 'tessellation_select'
      help_fig_tessellation_window.m           * - Information on figure file 'tessellation_window'
      help_fig_timeseries.m                    * - Information on figure file 'timeseries'
      help_fig_view_manager.m                  * - Information on figure file 'view_manager'
      help_fig_visu_maps.m                     * - Information on figure file 'visu_maps'
      help_fig_wave_single.m                   * - Information on figure file 'wave_single'
      help_fig_web_pages.m                     * - Information on figure file 'web_pages'
      help_fig_zscore_gui.m                    * - Information on figure file 'zscore_gui'
      help_figure_list.m                       * - Explain the figures used by BrainStorm
      help_manager.fig                         GUI figure for help_manager.m, bst_static_taskbar.m
      help_manager.m                           * - Application M-file for help_manager.fig
      help_pref_currentdata.m                  * - Preference information on structure of 'CurrentData'
      help_pref_dateofagreement.m              * - Preference information on structure of 'DateofAgreement'
      help_pref_defaultsubject.m               * - Preference information on structure of 'DefaultSubject'
      help_pref_iuserdatabase.m                * - Preference information on structure of 'iUserDataBase'
      help_pref_layout.m                       * - Preference information on structure of 'Layout'
      help_pref_studies.m                      * - Preference information on structure of 'Studies'
      help_pref_studysubject.m                 * - Preference information on structure of 'StudySubject'
      help_pref_subjects.m                     * - Preference information on structure of 'Subjects'
      help_pref_usercurrentdata.m              * - Preference information on structure of 'UserCurrentData'
      help_pref_userdatabase.m                 * - Preference information on structure of 'UserDataBase'
      help_pref_version.m                      * - Preference information on structure of 'Version'
      help_preference_list.m                   * - Explain the preferences used by BrainStorm
      hrow_linear.m                            * - Compute row in BEM geometry matrix for linear collocation
      ihot.mat                                 Mat-file
      importdata.fig                           GUI figure for importdata.m, data_manager.m, ds2brainstorm.m, and others
      importdata.m                             * - Case Switchyard for importing data from major MEG and EEG systems
      inorcol.m                                * - Compute the (pseudo)inverse of the column norms of matrix Mat
      interp_mail.m                            * - (French) Interpolate coordinates of the "maillage"
      kl_galerkin.m                            * - Galerking kernel for BEM of linear model
      kl_gram.m                                * - Kernel computation used in bem_xfer
      layout_manager.fig                       GUI figure for layout_manager.m, bst_static_taskbar.m
      layout_manager.m                         * - Application M-file to manage the window layout
      lcmvbf.fig                               GUI figure for lcmvbf.m, bst_sourceimaging.m, dataplot_cb.m
      lcmvbf.m                                 * - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
      leaflet.m                                * - (overwrite succinct one line summary here)
      leaflet.mat                              Mat-file
      least_squares_fit.m                      * - multiple dipole fit using fminsearch
      least_squares_parameters.fig             GUI figure for data_selector_cb.m, least_squares_parameters_cb.m, parametric_estimation.m
      least_squares_parameters_cb.m            * - least_squares GUI setup and execution
      listbox_win.fig                          GUI figure for importdata.m, subject_editor.m
      listchan.fig                             GUI figure for dataplot_cb.m
      load_brainstorm_file.m                   * - load or try to find and load the BrainStorm file.
      load_BsTMRI.m                            * - Load BrainStorm MRI format
      load_fif_apos.m                          * - Load in position information from Neuromag 122 ".apos" file
      load_fif_asc.m                           * - Load data from Neuromag 122 .fif file converted to ascii
      load_raw.m                               * - Read a BrainStorm "raw" format (.txt or .raw) matrix
      load_smf.m                               * - Load a simply written SMF file into the faces vertices structure
      logobrainstorm.jpg                       Figure file
      make_contents.mat                        Mat-file
      make_default_database.m                  * - Confirm or Create a default database, default study, default subject
      make_default_study.m                     * - Create simulated default data and link to a simulated subject
      make_default_subject.m                   * - Make a brainstormsubject and simulated MRI in a folder
      makeuswait.m                             * - change the figure pointer according to action
      manage_corticalscouts.fig                GUI figure for manage_corticalscouts.m, dataplot_cb.m
      manage_corticalscouts.m                  * - Application M-file for manage_corticalscouts.fig
      map_single.fig                           GUI figure for dataplot_cb.m
      mapping.fig                              GUI figure for bst_imaging_display.m, bst_mriviewer.m, bst_wavedata_display.m, and others
      markers_select.fig                       GUI figure with unknown calls
      mby3check.m                              * - Check to see if matrix is m by 3 or 3 by m.
      mby6check.m                              * - Check to see if matrix is m by 6 or 6 by m.
      meg4read.m                               * - READ CTF MEG4 file format
      meg4write.m                              * - WRITE CTF MEG4 file format
      meg_bem.m                                * - Calculate the mag field, BEM approach, arbitrary orientation
      mes.m                                    * - (overwrite succinct one line summary here)
      mesh2brainstorm.m                        * - Import .mesh tessellation files (BrainVisa interchange)
      minnorm.m                                * - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
      minnorm_parameters_cb.m                  * - Minimum Norm GUI setup and execution
      modulo.m                                 * - Compute the modulo
      montreal_data_create.m                   * - Read landmarks from the Montreal Phantom and create simulated data
      mri2scs.m                                * - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
      mri_parameters.fig                       GUI figure for mri_parameters.m, bst_mriviewer.m
      mri_parameters.m                         * - Application M-file for mri_parameters.fig
      mri_read_tool.fig                        GUI figure for mri_read_tool.m, bst_static_taskbar.m, make_default_subject.m, and others
      mri_read_tool.m                          * - AOS Version Application M-file to read in MRI and manipulate
      mribox.fig                               GUI figure for mritool_cb.m
      mritool_cb.m                             * - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
      multidipole_simulation_eeg_data_create.m  MONTREAL_DATA_CREATE - Create simulated EEG data using EGI array
      muopt.m                                  * - Quasi-optimality criterion for choosing the regularization parameter.
      mutincomp.m                              * - Mutual incompatibility among checkboxes and radiobuttons
      norcol.m                                 * - (French) squared sum of each column in a matrix
      norlig.m                                 * - (French) Norm of the rows of a matrix
      nowzooming.m                             * - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
      offset.m                                 * - each column in inmat such that a plot(outmat) looks good.
      os_meg.m                                 * - Calculate the (overlapping) sphere models for MEG
      overlapping_sphere.m                     * - Create overlapping spheres for E/MEG channels.
      overlapping_sphere_fmins.m               * - for use with OVERLAPPING_SPHERE
      parametric_estimation.fig                GUI figure for parametric_estimation.m, bst_static_taskbar.m, dataplot_cb.m, and others
      parametric_estimation.m                  * - GUI for selecting data segments and subspaces prior to estimation
      patch_swell.m                            * - enlarge a patch by appending the next set of adjacent vertices
      pcs_params.fig                           GUI figure for pcs_params.m, bst_mriviewer.m, mri_read_tool.m
      pcs_params.m                             * - Application M-file to set the parameters of the patient coordinates
      phantom_channel_assignment.fig           GUI figure for phantom_channel_assignment.m, tess_align_tool.m
      phantom_channel_assignment.m             * - Application M-file for phantom_channel_assignment.fig
      pleg.m                                   * - Used in CPOT, Legendre polynomials
      plot3d.m                                 * - 'plot3' the given three column data
      plot_dipole.m                            * - (r,n,s,c)
      plot_patch.m                             * - plots a vertex or face and its neighbors
      prepfig.m                                * - Prepare figure
      qslim.m                                  * - Mesh simplification, wrapper function for Garland's QSLIM executable program
      rap_music_parameters.fig                 GUI figure for rap_music_parameters.m, bst_static_taskbar.m, dataplot_cb.m, and others
      rap_music_parameters.m                   * - Application M-file for rap_music_parameters.fig
      rapmusic_gui.m                           * - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
      ray_intersect.m                          * - find intersection of a ray with a set of faces
      read_besa.m                              * - (overwrite succinct one line summary here)
      read_ctf_mri.m                           * - Read CTF MRI format (Version 2.1)
      read_gain.m                              * - Extract parts or a compete gain matrix from .bin binay gain file
      readdfs.m                                * - (overwrite succinct one line summary here)
      readdsgl.m                               * - Loads a BrainSuite .dsgl format tessellation file.
      readmarkerfile_ctf.m                     * - Read marker information from CTF MarkerFile.mrk
      readme.m                                 * - What's New in Each Revision of BrainStorm 2.0 (Alpha)
      readRaw.m                                * - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
      regcheck.m                               * - Check the regularization tag
      regsubspace.m                            * - Determine the subspace based on the regularization method
      results_time_series.fig                  GUI figure for results_time_series.m, rapmusic_gui.m
      results_time_series.m                    * - Application M-file for results_time_series.fig
      results_update.m                         * - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
      results_update_gui.fig                   GUI figure for results_update.m
      results_visualization.fig                GUI figure for results_visualization.m, bst_static_taskbar.m, rapmusic_gui.m, and others
      results_visualization.m                  * - Application M-file View the results of source modeling
      rownorm.m                                * - Calculate the L2 norm of each row of a matrix
      save_fieldnames.m                        * - Save just the fieldnames of a structure to a mat-file
      save_raw.m                               * - Save out a matrix in BrainStorm "raw" format, based on extension
      save_smf.m                               * - Save out a file in a simple form of the SMF format
      scs2mri.m                                * - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
      select_folder.fig                        GUI figure for select_folder.m, database_manager.m
      select_folder.m                          * - Application M-file for bst_SelectFolder.fig
      sensor_122.m                             * - Return the Neuromag 122 information
      sensor_axial.m                           * - Generate axial gradiometers
      sensor_planar.m                          * - Generate planar gradiometers
      sensor_ring.m                            * - Generate rings of sensors about a sphere roughly uniformly spaced.
      sensor_spacing.m                         * - generate sites roughly evenly spaced about a hemisphere.
      separation.m                             * - Splitting the brain into 2 parts
      set_dataviewing_parameters.fig           GUI figure for dataplot_cb.m
      set_sourceviewing_parameters.fig         GUI figure for set_sourceviewing_parameters.m, dataplot_cb.m
      set_sourceviewing_parameters.m           * - Application M-file for set_sourceviewing_parameters.fig
      shepards.m                               * - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
      show_signal_decomposition.fig            GUI figure for show_signal_decomposition.m
      show_signal_decomposition.m              * - Application M-file for show_signal_decomposition.fig
      simulator.fig                            GUI figure for simulator.m, bst_static_taskbar.m, make_default_study.m, and others
      simulator.m                              * - Application M-file for simulator.fig
      simulator_mri.fig                        GUI figure for simulator_mri.m, bst_static_taskbar.m, make_default_subject.m
      simulator_mri.m                          * - Application M-file to make a simulated spherical MRI
      smooth_cortex.m                          * - Smoothes tesselation
      solid_angle2.m                           * - Solid angle of a viewed triangle
      sort_key.m                               * - Sort with column keys
      source_grid.m                            * - generate variable grid of possible source locations
      source_grids.m                           * - Generate source grids for parametric model searches
      source_tess.m                            * - generate variable grid of possible source locations
      sourceimaging.fig                        GUI figure for sourceimaging.m, bst_sourceimaging.m, bst_static_taskbar.m, and others
      sourceimaging.m                          * - Main switch to source imaging routines
      sourceimaging_parameters.fig             GUI figure with unknown calls
      sph_rphtestgrid2.mat                     Mat-file
      sph_rphtestgrid3.mat                     Mat-file
      str2mat0.m                               * - (Deprecated) Form text matrix from individual strings.
      str_repeater.m                           * - Repeat string format and separator to display data
      study_editor.fig                         GUI figure for study_editor.m, data_manager.m, importdata.m
      study_editor.m                           * - GUI to edit the BrainStorm Study information, case switchyard
      subcorr_gui.m                            * - Subcorr function custom to the gui features
      subject_editor.fig                       GUI figure for subject_editor.m, bst_static_taskbar.m, data_manager.m, and others
      subject_editor.m                         * - GUI to edit the BrainStorm Subject information, case switchyard
      surf2vol_interp.m                        * - (overwrite succinct one line summary here)
      svd0.m                                   * - Economy SVD in both U and V, S returned sparse diagonal
      tess_align_tool.fig                      GUI figure for tess_align_tool.m, subject_editor.m
      tess_align_tool.m                        * - Application M-file for tess_align_tool.fig
      tesselate.m                              * - tesselate based on the sensor_ring program
      tessellation_handler.fig                 GUI figure for tessellation_handler.m, set_sourceviewing_parameters.m
      tessellation_handler.m                   * - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
      tessellation_outwards.m                  * - Ensure that tessellation ordering is "outwards"
      tessellation_stats.m                     * - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
      tessellation_window.fig                  GUI figure for bst_imaging_display.m, dataplot_cb.m, manage_corticalscouts.m, and others
      togglebuttoncolor.m                      * - : change button color of toggle button
      toggleface.m                             * - Toggle the faces and edges as invisible
      togglelight.m                            * - toggle the lighting flat or phong
      toolbox_cross_ref.mat                    Mat-file
      trans_matrix.m                           * - calculate BEM transfer matrices for EEG and MEG
      transform.m                              * - Transform coordinates between PCS and MRI
      tri2brainstorm.m                         * - Read .tri file into BrainStorm format
      tri_area.m                               * - Find areas of all triangles
      tri_interp.m                             * - Compute the interpolation matrix from a cortical tessellation to the MRI volume
      vec.m                                    * - Lexicographical ordering of a matrix, A(:).
      vertices_connectivity.m                  * - Generate the connections between vertices
      view_surface.m                           * - Convenient function to consistently plot surfaces
      visu_maps.fig                            GUI figure with unknown calls
      warp_everything_bst.m                     WARP_EVERYTHING - (summary line here)
      wave_single.fig                          GUI figure with unknown calls
      web_pages.fig                            GUI figure for web_pages.m, bst_static_taskbar.m
      web_pages.m                              * - Listbox of relevant BrainStorm web pages and email addresses
      weighting_scalar.m                       * - For use with Overlapping Sphere
      windclf.m                                * - Reset and clear the figure, retaining the NAME property
      windfind.m                               * - Find or create a particular window using it's NAME property
      zhang_fit.m                              * - Compute 'Berg' parameters for EEG multilayer sphere
      zscore_gui.fig                           GUI figure for zscore_gui.m, dataplot_cb.m
      zscore_gui.m                             * - : management of zscore visualization

     Category: Unknown Category

      bst_cactivcmap.mat    Mat-file
      fidufit.mat           Mat-file
      geom100.mat           Mat-file
      sph_rphtestgrid2.mat  Mat-file
      sph_rphtestgrid3.mat  Mat-file
      toolbox_cross_ref.mat Mat-file

     Category: Missing in Toolbox

      No files in this category

     Category: Archive

      cpot.m            * - UNKNOWN, Send to Archive?
      mes.m             * - (overwrite succinct one line summary here)
      pleg.m            * - Used in CPOT, Legendre polynomials
      prepfig.m         * - Prepare figure
      surf2vol_interp.m * - (overwrite succinct one line summary here)

## Matlab files in this Directory

    aic_mdl             AIC_MDL - Calculate Information Theoretic Criteria for data dimensionality
    avw2brainstorm      AVW2BRAINSTORM - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
    bem_gain            BEM_GAIN - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
    bem_kernel          BEM_KERNEL - computes kernel matrices for EEG and MEG
    bem_xfer            BEM_XFER - Computation of the MEG and/or EEG BEM transfer matrices
    berg                BERG - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
    bestfitsph          BESTFITSPH - Find best fitting sphere
    blk_diag            BLK_DIAG - Make or extract a sparse block diagonal matrix
    blk_lex             BLK_LEX - Lexicographically order the submatrices in A
    brainstorm          BRAINSTORM - Go to the BrainStorm home web page
    brainstorm_filt     BRAINSTORM_FILT - Zero-phase filter dedicated to multi-channel MEG and EEG data
    brainstorm_reset    BRAINSTORM_RESET - Clear Matlab BrainStorm preferences, remove default data
    browse_study_folder BROWSE_STUDY_FOLDER - Find all *brainstormstudy.mat files in a directory tree
    bstscript_ForwardInverse_basicBSTSCRIPT_FORWARDINVERSE_BASIC - Basic Head Modelling and Source Imaging BrainStorm Script
    bst_color_scheme    BST_COLOR_SCHEME - apply the BrainStorm color, font, size scheme to the figure
    bst_extractmarkersctfBST_EXTRACTMARKERSCTF - Extract signal block from a .ds CTF data set
    bst_headmodeler     BST_HEADMODELER - Solution to the MEG/EEG forward problem
    bst_imaging_display BST_IMAGING_DISPLAY - : display utility for cortical distributed source imaging
    bst_layout          BST_LAYOUT - Manage all BST windows in a standard layout
    bst_message_window  BST_MESSAGE_WINDOW - Application M-file for bst_message_window.fig, with NON CALLBACKS
    bst_mriviewer       BST_MRIVIEWER - Application M-file for bst_mriviewer.fig
    bst_readmarkerfilectfBST_READMARKERFILECTF - read_markerf reads the CTF markerfile MarkerFile.mrk
    bst_sourceimaging   BST_SOURCEIMAGING - Command line call to source imaging routines
    bst_splashscreen    BST_SPLASHSCREEN - GUI app for license information and agreement
    bst_static_taskbar  BST_STATIC_TASKBAR - BrainStorm's primary taskbar always visible
    bst_wavedata_displayBST_WAVEDATA_DISPLAY - Various ways of loooking at time series
    bst_win_manager     BST_WIN_MANAGER - GUI Window management for BrainStorm
    carto_sensors       CARTO_SENSORS - (Rcoils,v);
    carto_sph           CARTO_SPH - (sensloc,v,center)
    catci               CATCI - computing color coding for activation on the vertices
    closest             CLOSEST - Find point in one array closest to point in another array
    colnorm             COLNORM - Calculate L2 norm for each column of a matrix and normalize
    contents            BrainStorm Toolbox
    contraste           CONTRASTE - computing the colormap coding deepness
    covariance_plots    COVARIANCE_PLOTS - M-file for covariance_generator, covariance_plots
    cpot                CPOT - UNKNOWN, Send to Archive?
    crossprod           CROSSPROD - Cross product between two sets, each set with three columns
    cross_mat           CROSS_MAT - Sparse cross product matrix good for matrix equivalent operation
    curvature_cortex    CURVATURE_CORTEX - calculates cortex curvature
    c_activ             C_ACTIV - Finding a colormap to code deepness and activation
    database_manager    DATABASE_MANAGER - GUI to edit the User Databases and select one
    dataplot_cb         DATAPLOT_CB - : Callback switchyard for the DATAViewer Tool
    data_manager        DATA_MANAGER - Edit/select database, subjects, studies, datasets, build headmodels, import data.
    data_selector_cb    DATA_SELECTOR_CB - Callback function to setup and execute inverse techniques
    depthgauge          DEPTHGAUGE - Make a depthgauge for measuring depth
    dip                 DIP - UNKNOWN, move to archive?
    dist_sph            DIST_SPH - FMINS distance function used to minimize the fit to a sphere
    dlegpoly            DLEGPOLY - Evaluate the first N Legendre polynomials
    dotprod             DOTPROD - Dot product of two vectors (deprecated)
    ds2brainstorm       DS2BRAINSTORM - Convert a DS CTF dataset into BrainStorm format
    eeg2bs              EEG2BS - (fnamein,fnameout,type,channel)
    eeg_bem             EEG_BEM - Calculate the electric potential , BEM approach, arbitrary orientation
    eeg_load_scan3avg   EEG_LOAD_SCAN3AVG - Read a NeuroScan 3.x AVG File
    eeg_sph             EEG_SPH - Calculate the electric potential , spherical head, arbitrary orientation
    elpos2bs            ELPOS2BS - this function converts electrode position files into BrainStorm Channel format
    embedding           EMBEDDING - computing the approximate embedding surface
    engstr              ENGSTR - create a string for the number in engineering format
    extract_channels    EXTRACT_CHANNELS - Extract the channels to be used in this particular run
    extract_ctf_markers EXTRACT_CTF_MARKERS - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
    faces_connectivity  FACES_CONNECTIVITY - Generate the connections of faces to a vertex
    fidufit             FIDUFIT - (overwrite succinct one line summary here)
    file_selection_win  FILE_SELECTION_WIN - Application M-file for file_selection_win.fig
    filterGUI           FILTERGUI - M-file for filterGUI.fig
    findclosest         FINDCLOSEST - Find entries of closest elements between two vectors
    find_brainstorm_filesFIND_BRAINSTORM_FILES - Find BrainStorm subjects or study files, create Menu
    find_brainstorm_structureFIND_BRAINSTORM_STRUCTURE - Find all of the available files with a subject or study
    find_mfiles         FIND_MFILES - Find m-files that open a particular figure handle or the GCF
    find_subdir         FIND_SUBDIR - Find all subdirectories in a BrainStorm path
    fronorm             FRONORM - Fast calculation of the Frobenius Norm of a Matrix
    gain_interp         GAIN_INTERP - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
    genpath2cell        GENPATH2CELL - convert path or generated path string into cell array
    get_channel         GET_CHANNEL - Get the Channel information associated with a particular data file
    get_gain            GET_GAIN - Get a set of source foward fields from a .bin gain matrix file
    get_user_directory  GET_USER_DIRECTORY - Get the user's root directory information
    ginput2             GINPUT2 - Graphical input from mouse.
    good_channel        GOOD_CHANNEL - Extract channels of a given type
    grayish             GRAYISH - % gray out the lower end of a spectrum for less severe palette
    gridmaker           GRIDMAKER - 3D regular gridding of surface envelope
    hanning_window      HANNING_WINDOW - Calculate the hanning window function for n points
    headmodeler_gui     HEADMODELER_GUI - Application M-file to build head models
    help_database_list  HELP_DATABASE_LIST - Explain the database used by BrainStorm
    help_data_bststudy  HELP_DATA_BSTSTUDY - Information on database files of type 'bststudy'
    help_data_bstsubjectHELP_DATA_BSTSUBJECT - Information on database files of type 'bstsubject'
    help_data_channel   HELP_DATA_CHANNEL - Information on database files of type 'channel'
    help_data_data      HELP_DATA_DATA - Information on database files of type 'data'
    help_data_headmodel HELP_DATA_HEADMODEL - Information on database files of type 'headmodel'
    help_data_image     HELP_DATA_IMAGE - Information on database files of type 'image'
    help_data_raw       HELP_DATA_RAW - Information on database files of type 'raw'
    help_data_results   HELP_DATA_RESULTS - Information on database files of type 'results'
    help_data_tess      HELP_DATA_TESS - Information on database files of type 'tess'
    help_data_triconn   HELP_DATA_TRICONN - Information on database files of type 'triconn'
    help_data_vertconn  HELP_DATA_VERTCONN - Information on database files of type 'vertconn'
    help_editing_brainstormHELP_EDITING_BRAINSTORM - Information on how to update and edit your version of BrainStorm
    help_figure_list    HELP_FIGURE_LIST - Explain the figures used by BrainStorm
    help_fig_bem_param_selectHELP_FIG_BEM_PARAM_SELECT - Information on figure file 'bem_param_select'
    help_fig_bst_message_windowHELP_FIG_BST_MESSAGE_WINDOW - Information on figure file 'bst_message_window'
    help_fig_bst_splashscreenHELP_FIG_BST_SPLASHSCREEN - Information on figure file 'bst_splashscreen'
    help_fig_bst_static_taskbarHELP_FIG_BST_STATIC_TASKBAR - Information on figure file 'bst_static_taskbar'
    help_fig_channel_selectHELP_FIG_CHANNEL_SELECT - Information on figure file 'channel_select'
    help_fig_chi_pdf_fitHELP_FIG_CHI_PDF_FIT - Information on figure file 'chi_pdf_fit'
    help_fig_covariance_generatorHELP_FIG_COVARIANCE_GENERATOR - Information on figure file 'covariance_generator'
    help_fig_covariance_plotsHELP_FIG_COVARIANCE_PLOTS - Information on figure file 'covariance_plots'
    help_fig_database_managerHELP_FIG_DATABASE_MANAGER - Information on figure file 'database_manager'
    help_fig_dataplot   HELP_FIG_DATAPLOT - Information on figure file 'dataplot'
    help_fig_data_managerHELP_FIG_DATA_MANAGER - Information on figure file 'data_manager'
    help_fig_data_selectorHELP_FIG_DATA_SELECTOR - Information on figure file 'data_selector'
    help_fig_generic_listbox_winHELP_FIG_GENERIC_LISTBOX_WIN - Information on figure file 'generic_listbox_win'
    help_fig_headmodeler_guiHELP_FIG_HEADMODELER_GUI - Information on figure file 'headmodeler_gui'
    help_fig_help_managerHELP_FIG_HELP_MANAGER - Information on figure file 'help_manager'
    help_fig_importdata HELP_FIG_IMPORTDATA - Information on figure file 'importdata'
    help_fig_layout_managerHELP_FIG_LAYOUT_MANAGER - Information on figure file 'layout_manager'
    help_fig_least_squares_parametersHELP_FIG_LEAST_SQUARES_PARAMETERS - Information on figure file 'least_squares_parameters'
    help_fig_listbox_winHELP_FIG_LISTBOX_WIN - Information on figure file 'listbox_win'
    help_fig_listchan   HELP_FIG_LISTCHAN - Information on figure file 'listchan'
    help_fig_manage_corticalscoutsHELP_FIG_MANAGE_CORTICALSCOUTS - Information on figure file 'manage_corticalscouts'
    help_fig_mapping    HELP_FIG_MAPPING - Information on figure file 'mapping'
    help_fig_map_single HELP_FIG_MAP_SINGLE - Information on figure file 'map_single'
    help_fig_markers_selectHELP_FIG_MARKERS_SELECT - Information on figure file 'markers_select'
    help_fig_minnorm_parametersHELP_FIG_MINNORM_PARAMETERS - Information on figure file 'minnorm_parameters'
    help_fig_mribox     HELP_FIG_MRIBOX - Information on figure file 'mribox'
    help_fig_mri_read_toolHELP_FIG_MRI_READ_TOOL - Information on figure file 'mri_read_tool'
    help_fig_mri_scan_paramsHELP_FIG_MRI_SCAN_PARAMS - Information on figure file 'mri_scan_params'
    help_fig_parametric_estimationHELP_FIG_PARAMETRIC_ESTIMATION - Information on figure file 'parametric_estimation'
    help_fig_pcs_params HELP_FIG_PCS_PARAMS - Information on figure file 'pcs_params'
    help_fig_rap_music_parametersHELP_FIG_RAP_MUSIC_PARAMETERS - Information on figure file 'rap_music_parameters'
    help_fig_rap_parametersHELP_FIG_RAP_PARAMETERS - Information on figure file 'rap_parameters'
    help_fig_results_time_seriesHELP_FIG_RESULTS_TIME_SERIES - Information on figure file 'results_time_series'
    help_fig_results_update_guiHELP_FIG_RESULTS_UPDATE_GUI - Information on figure file 'results_update_gui'
    help_fig_results_visualizationHELP_FIG_RESULTS_VISUALIZATION - Information on figure file 'results_visualization'
    help_fig_select_folderHELP_FIG_SELECT_FOLDER - Information on figure file 'select_folder'
    help_fig_set_dataviewing_parametersHELP_FIG_SET_DATAVIEWING_PARAMETERS - Information on figure file 'set_dataviewing_parameters'
    help_fig_set_sourceviewing_parametersHELP_FIG_SET_SOURCEVIEWING_PARAMETERS - Information on figure file 'set_sourceviewing_parameters'
    help_fig_show_signal_decompositionHELP_FIG_SHOW_SIGNAL_DECOMPOSITION - Information on figure file 'show_signal_decomposition'
    help_fig_simulator  HELP_FIG_SIMULATOR - Information on figure file 'simulator'
    help_fig_simulator_mriHELP_FIG_SIMULATOR_MRI - Information on figure file 'simulator_mri'
    help_fig_sourceimagingHELP_FIG_SOURCEIMAGING - Information on figure file 'sourceimaging'
    help_fig_sourceimaging_parametersHELP_FIG_SOURCEIMAGING_PARAMETERS - Information on figure file 'sourceimaging_parameters'
    help_fig_study_editorHELP_FIG_STUDY_EDITOR - Information on figure file 'study_editor'
    help_fig_subject_editorHELP_FIG_SUBJECT_EDITOR - Information on figure file 'subject_editor'
    help_fig_taskbar    HELP_FIG_TASKBAR - Information on figure file 'taskbar'
    help_fig_tessellation_handlerHELP_FIG_TESSELLATION_HANDLER - Information on figure file 'tessellation_handler'
    help_fig_tessellation_selectHELP_FIG_TESSELLATION_SELECT - Information on figure file 'tessellation_select'
    help_fig_tessellation_windowHELP_FIG_TESSELLATION_WINDOW - Information on figure file 'tessellation_window'
    help_fig_timeseries HELP_FIG_TIMESERIES - Information on figure file 'timeseries'
    help_fig_view_managerHELP_FIG_VIEW_MANAGER - Information on figure file 'view_manager'
    help_fig_visu_maps  HELP_FIG_VISU_MAPS - Information on figure file 'visu_maps'
    help_fig_wave_singleHELP_FIG_WAVE_SINGLE - Information on figure file 'wave_single'
    help_fig_web_pages  HELP_FIG_WEB_PAGES - Information on figure file 'web_pages'
    help_fig_zscore_gui HELP_FIG_ZSCORE_GUI - Information on figure file 'zscore_gui'
    help_manager        HELP_MANAGER - Application M-file for help_manager.fig
    help_preference_listHELP_PREFERENCE_LIST - Explain the preferences used by BrainStorm
    help_pref_currentdataHELP_PREF_CURRENTDATA - Preference information on structure of 'CurrentData'
    help_pref_dateofagreementHELP_PREF_DATEOFAGREEMENT - Preference information on structure of 'DateofAgreement'
    help_pref_defaultsubjectHELP_PREF_DEFAULTSUBJECT - Preference information on structure of 'DefaultSubject'
    help_pref_iuserdatabaseHELP_PREF_IUSERDATABASE - Preference information on structure of 'iUserDataBase'
    help_pref_layout    HELP_PREF_LAYOUT - Preference information on structure of 'Layout'
    help_pref_studies   HELP_PREF_STUDIES - Preference information on structure of 'Studies'
    help_pref_studysubjectHELP_PREF_STUDYSUBJECT - Preference information on structure of 'StudySubject'
    help_pref_subjects  HELP_PREF_SUBJECTS - Preference information on structure of 'Subjects'
    help_pref_usercurrentdataHELP_PREF_USERCURRENTDATA - Preference information on structure of 'UserCurrentData'
    help_pref_userdatabaseHELP_PREF_USERDATABASE - Preference information on structure of 'UserDataBase'
    help_pref_version   HELP_PREF_VERSION - Preference information on structure of 'Version'
    hrow_linear         HROW_LINEAR - Compute row in BEM geometry matrix for linear collocation
    importdata          IMPORTDATA - Case Switchyard for importing data from major MEG and EEG systems
    inorcol             INORCOL - Compute the (pseudo)inverse of the column norms of matrix Mat
    interp_mail         INTERP_MAIL - (French) Interpolate coordinates of the "maillage"
    kl_galerkin         KL_GALERKIN - Galerking kernel for BEM of linear model
    kl_gram             KL_GRAM - Kernel computation used in bem_xfer
    layout_manager      LAYOUT_MANAGER - Application M-file to manage the window layout
    lcmvbf              LCMVBF - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
    leaflet             LEAFLET - (overwrite succinct one line summary here)
    least_squares_fit   LEAST_SQUARES_FIT - multiple dipole fit using fminsearch
    least_squares_parameters_cbLEAST_SQUARES_PARAMETERS_CB - least_squares GUI setup and execution
    load_brainstorm_fileLOAD_BRAINSTORM_FILE - load or try to find and load the BrainStorm file.
    load_BsTMRI         LOAD_BSTMRI - Load BrainStorm MRI format
    load_fif_apos       LOAD_FIF_APOS - Load in position information from Neuromag 122 ".apos" file
    load_fif_asc        LOAD_FIF_ASC - Load data from Neuromag 122 .fif file converted to ascii
    load_raw            LOAD_RAW - Read a BrainStorm "raw" format (.txt or .raw) matrix
    load_smf            LOAD_SMF - Load a simply written SMF file into the faces vertices structure
    makeuswait          MAKEUSWAIT - change the figure pointer according to action
    make_default_databaseMAKE_DEFAULT_DATABASE - Confirm or Create a default database, default study, default subject
    make_default_study  MAKE_DEFAULT_STUDY - Create simulated default data and link to a simulated subject
    make_default_subjectMAKE_DEFAULT_SUBJECT - Make a brainstormsubject and simulated MRI in a folder
    manage_corticalscoutsMANAGE_CORTICALSCOUTS - Application M-file for manage_corticalscouts.fig
    mby3check           MBY3CHECK - Check to see if matrix is m by 3 or 3 by m.
    mby6check           MBY6CHECK - Check to see if matrix is m by 6 or 6 by m.
    meg4read            MEG4READ - READ CTF MEG4 file format
    meg4write           MEG4WRITE - WRITE CTF MEG4 file format
    meg_bem             MEG_BEM - Calculate the mag field, BEM approach, arbitrary orientation
    mes                 MES - (overwrite succinct one line summary here)
    mesh2brainstorm     MESH2BRAINSTORM - Import .mesh tessellation files (BrainVisa interchange)
    minnorm             MINNORM - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
    minnorm_parameters_cbMINNORM_PARAMETERS_CB - Minimum Norm GUI setup and execution
    modulo              MODULO - Compute the modulo
    montreal_data_createMONTREAL_DATA_CREATE - Read landmarks from the Montreal Phantom and create simulated data
    mri2scs             MRI2SCS - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
    mritool_cb          MRITOOL_CB - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
    mri_parameters      MRI_PARAMETERS - Application M-file for mri_parameters.fig
    mri_read_tool       MRI_READ_TOOL - AOS Version Application M-file to read in MRI and manipulate
    multidipole_simulation_eeg_data_createMONTREAL_DATA_CREATE - Create simulated EEG data using EGI array
    muopt               MUOPT - Quasi-optimality criterion for choosing the regularization parameter.
    mutincomp           MUTINCOMP - Mutual incompatibility among checkboxes and radiobuttons
    norcol              NORCOL - (French) squared sum of each column in a matrix
    norlig              NORLIG - (French) Norm of the rows of a matrix
    nowzooming          NOWZOOMING - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
    offset              OFFSET - each column in inmat such that a plot(outmat) looks good.
    os_meg              OS_MEG - Calculate the (overlapping) sphere models for MEG
    overlapping_sphere  OVERLAPPING_SPHERE - Create overlapping spheres for E/MEG channels.
    overlapping_sphere_fminsOVERLAPPING_SPHERE_FMINS - for use with OVERLAPPING_SPHERE
    parametric_estimationPARAMETRIC_ESTIMATION - GUI for selecting data segments and subspaces prior to estimation
    patch_swell         PATCH_SWELL - enlarge a patch by appending the next set of adjacent vertices
    pcs_params          PCS_PARAMS - Application M-file to set the parameters of the patient coordinates
    phantom_channel_assignmentPHANTOM_CHANNEL_ASSIGNMENT - Application M-file for phantom_channel_assignment.fig
    pleg                PLEG - Used in CPOT, Legendre polynomials
    plot3d              PLOT3D - 'plot3' the given three column data
    plot_dipole         PLOT_DIPOLE - (r,n,s,c)
    plot_patch          PLOT_PATCH - plots a vertex or face and its neighbors
    prepfig             PREPFIG - Prepare figure
    qslim               QSLIM - Mesh simplification, wrapper function for Garland's QSLIM executable program
    rapmusic_gui        RAPMUSIC_GUI - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
    rap_music_parametersRAP_MUSIC_PARAMETERS - Application M-file for rap_music_parameters.fig
    ray_intersect       RAY_INTERSECT - find intersection of a ray with a set of faces
    readdfs             READDFS - (overwrite succinct one line summary here)
    readdsgl            READDSGL - Loads a BrainSuite .dsgl format tessellation file.
    readmarkerfile_ctf  READMARKERFILE_CTF - Read marker information from CTF MarkerFile.mrk
    readme              README - What's New in Each Revision of BrainStorm 2.0 (Alpha)
    readRaw             READRAW - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
    read_besa           READ_BESA - (overwrite succinct one line summary here)
    read_ctf_mri        READ_CTF_MRI - Read CTF MRI format (Version 2.1)
    read_gain           READ_GAIN - Extract parts or a compete gain matrix from .bin binay gain file
    regcheck            REGCHECK - Check the regularization tag
    regsubspace         REGSUBSPACE - Determine the subspace based on the regularization method
    results_time_series RESULTS_TIME_SERIES - Application M-file for results_time_series.fig
    results_update      RESULTS_UPDATE - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
    results_visualizationRESULTS_VISUALIZATION - Application M-file View the results of source modeling
    rownorm             ROWNORM - Calculate the L2 norm of each row of a matrix
    save_fieldnames     SAVE_FIELDNAMES - Save just the fieldnames of a structure to a mat-file
    save_raw            SAVE_RAW - Save out a matrix in BrainStorm "raw" format, based on extension
    save_smf            SAVE_SMF - Save out a file in a simple form of the SMF format
    scs2mri             SCS2MRI - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
    select_folder       SELECT_FOLDER - Application M-file for bst_SelectFolder.fig
    sensor_122          SENSOR_122 - Return the Neuromag 122 information
    sensor_axial        SENSOR_AXIAL - Generate axial gradiometers
    sensor_planar       SENSOR_PLANAR - Generate planar gradiometers
    sensor_ring         SENSOR_RING - Generate rings of sensors about a sphere roughly uniformly spaced.
    sensor_spacing      SENSOR_SPACING - generate sites roughly evenly spaced about a hemisphere.
    separation          SEPARATION - Splitting the brain into 2 parts
    set_sourceviewing_parametersSET_SOURCEVIEWING_PARAMETERS - Application M-file for set_sourceviewing_parameters.fig
    shepards            SHEPARDS - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
    show_signal_decompositionSHOW_SIGNAL_DECOMPOSITION - Application M-file for show_signal_decomposition.fig
    simulator           SIMULATOR - Application M-file for simulator.fig
    simulator_mri       SIMULATOR_MRI - Application M-file to make a simulated spherical MRI
    smooth_cortex       SMOOTH_CORTEX - Smoothes tesselation
    solid_angle2        SOLID_ANGLE2 - Solid angle of a viewed triangle
    sort_key            SORT_KEY - Sort with column keys
    sourceimaging       SOURCEIMAGING - Main switch to source imaging routines
    source_grid         SOURCE_GRID - generate variable grid of possible source locations
    source_grids        SOURCE_GRIDS - Generate source grids for parametric model searches
    source_tess         SOURCE_TESS - generate variable grid of possible source locations
    str2mat0            STR2MAT0 - (Deprecated) Form text matrix from individual strings.
    str_repeater        STR_REPEATER - Repeat string format and separator to display data
    study_editor        STUDY_EDITOR - GUI to edit the BrainStorm Study information, case switchyard
    subcorr_gui         SUBCORR_GUI - Subcorr function custom to the gui features
    subject_editor      SUBJECT_EDITOR - GUI to edit the BrainStorm Subject information, case switchyard
    surf2vol_interp     SURF2VOL_INTERP - (overwrite succinct one line summary here)
    svd0                SVD0 - Economy SVD in both U and V, S returned sparse diagonal
    tesselate           TESSELATE - tesselate based on the sensor_ring program
    tessellation_handlerTESSELLATION_HANDLER - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
    tessellation_outwardsTESSELLATION_OUTWARDS - Ensure that tessellation ordering is "outwards"
    tessellation_stats  TESSELLATION_STATS - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
    tess_align_tool     TESS_ALIGN_TOOL - Application M-file for tess_align_tool.fig
    togglebuttoncolor   TOGGLEBUTTONCOLOR - : change button color of toggle button
    toggleface          TOGGLEFACE - Toggle the faces and edges as invisible
    togglelight         TOGGLELIGHT - toggle the lighting flat or phong
    transform           TRANSFORM - Transform coordinates between PCS and MRI
    trans_matrix        TRANS_MATRIX - calculate BEM transfer matrices for EEG and MEG
    tri2brainstorm      TRI2BRAINSTORM - Read .tri file into BrainStorm format
    tri_area            TRI_AREA - Find areas of all triangles
    tri_interp          TRI_INTERP - Compute the interpolation matrix from a cortical tessellation to the MRI volume
    vec                 VEC - Lexicographical ordering of a matrix, A(:).
    vertices_connectivityVERTICES_CONNECTIVITY - Generate the connections between vertices
    view_surface        VIEW_SURFACE - Convenient function to consistently plot surfaces
    warp_everything_bst WARP_EVERYTHING - (summary line here)
    web_pages           WEB_PAGES - Listbox of relevant BrainStorm web pages and email addresses
    weighting_scalar    WEIGHTING_SCALAR - For use with Overlapping Sphere
    windclf             WINDCLF - Reset and clear the figure, retaining the NAME property
    windfind            WINDFIND - Find or create a particular window using it's NAME property
    zhang_fit           ZHANG_FIT - Compute 'Berg' parameters for EEG multilayer sphere
    zscore_gui          ZSCORE_GUI - : management of zscore visualization