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# bst_sourceimaging

## (Toolbox/bst_sourceimaging.m in BrainStorm 2.0 (Alpha))

### Function Synopsis

    [Results,OPTIONS] = bst_sourceimaging(varargin);

### Help Text

    BST_SOURCEIMAGING - Command line call to source imaging routines
     function [Results,OPTIONS] = bst_sourceimaging(varargin);
     function [Results] = bst_sourceimaging(varargin);
     [Results] = bst_sourceimaging(OPTIONS)
     [OPTIONS] = bst_sourceimaging % Returns the default OPTIONS parameters
     [Results,OPTIONS] = bst_sourceimaging(OPTIONS) % Returns also the OPTIONS parameters supplemented by the default settings applied to empty fields in original OPTIONS

     INPUTS
           OPTIONS - a structure of parameters
     OUTPUTS
           Results - a regular BrainStorm Results structure (see documentation for details)

     Details of the structure for OPTIONS

       Data Information:
              .DataFile   : A string or Cell array of strings of actual data files requested for localization. If isempty, look for data array(s) in .Data
              .TimeSegment: Vector of min and max time samples (in seconds) giving first and last latencies specifying
                            the time window for analysis.
                            (Default is empty : i.e. take all time samples)
              .BaselineTimeSegment: Vector of min and max time samples (in seconds) giving first and last latencies specifying
                            the time window for baseline. A specific Results file will be created or .BaselineImageGridAmp and .BaselineImageGridTime fields
                            will be added to the Results output structure
                            (Default is empty : i.e. no baseline is used).
              .BaselineSegment: Again, Vector of min and max time samples (in seconds) giving first and last latencies specifying
                            the time window for baseline. The baseline will be
                            used to noise normalize the cortical maps
              .ChannelFlag: a vector of flags (1 for good, -1 for bad) of channels in the data file to process
                            (Default is ChannelFlag from data file or all good channels from data array )
              .DataTypes  : A scalar or a vector of codes to specidy which is the type of data to use:
                            1 is MEG, 2 is EEG, 3 is Fusion
                            (Default is all data type available)
              .FusionType : Code for the type of fusion to apply between MEG and EEG data
                            1 is linear, 2 is non-linear
                            (Defaut is 1)
              .Data       : Specify some data to be passed independently of any data file
                                .F : Cell array of nChannel x nTime array(s) of data.
                                     If not empty: uses this array as input for inverse process.
                                .Channel : Channel structure corresponding to data in .F
                                .Time : Vector specifying the time instants of data samples in .Data.F
                            (Default for .Data is empty)

       Source Support Information:
              .GridLoc    : a string or a 3xN matrix
                            - if a string : specifies the name of the BrainStorm tessellation file where cortical support is stored
                            NOT RELEVANT : - if a matrix : contains the coordinates of the cortical locations where to compute the cortical current density
              .iGrid      : when .GridLoc is a file name, specify which imaging grid to use (Default is 1).

       Forward Field Information :
              .HeadModelFile: Cell array of strings for filename of the BrainStorm headmodel file(s) to use for imaging. If is empty, look for.GainFile field.
                              There are only 2 options at this point:
                                    - .HeadModelFile is of length 1, a single headmodel file is used for all data sets passed to the bst_sourceimaging.
                                    - .HeadModelFile is of length the number of data sets passed to bst_sourceimaging (i.e. the length of .DataFile).
        NOT IMPLEMENTED YET :
              .GainFile   : Cell array of filenames of image gain matrix (.bin) for the selected cortical support. If is empty, look for .Gain field.
                            Remarks about the length of .HeadModelFile hold for .GainFile too.
              .Gain       : Cell array containing the gain matrix of the cortical support (either a single cell or a cell array the length the number of data sets passed to function)
                            Remarks about the length of .HeadModelFile hold for .GainFile too.
                            (Default is empty).

       Processing Parameters :
              .Method     : A string that specifies the imaging method
                            'Minimum-Norm Imaging': MN estimate of current density using MN priors on source amplitudes (Default)
                            'Recursive Min. Norm.': Recursive MN estimate based on adaptation of FOCUSS (NOT AVAILABLE)
                            'SPTF' : Scanning technique constrained on cortical surface (see Denis Schwartz) (UNDER DEVELOPMENT)
                            'ST-MAP' : Non-linear imaging technique based on sparse-focal image models (NOT AVAILABLE)
                            'RAP-MUSIC' : link to Mosher's GUI (UNDER DEVELOPMENT)
                            (Default is 'Minimum-Norm Imaging')
              .Tikhonov   : Hyperparameter used in Tykhonov regularization
                            (Default is 10)
              .FFNormalization : Apply forward field normalization of the gain matrix
                            (Default is 1)
              .Rank       : Specify a rank for signal subspace following SVD of the spatio-temporal data matrix
                            (Default is full rank)

       Output Information:
              .ResultFile : optional string for filename where to write results
                            if 'default', filename as used in GUI environment is used
                            (Default is '' (no Result file created))
              .ResultFileSaved : Cell array of strings that keeps a log of all result file names that were create during call to this function
                            (Default is left empty, [])
              .ComputeKernel : If 1, compute MN kernel to be applied subsequently to data instead of full ImageGridAmp array
                             CAVEAT: Relevant to Minimum-Norm source mapping only so far
                             (Default is 0: compute full ImageGridAmp array)
              .SaveModelData : 1 :Save model part of data (Fsynth) into ResultFile (if any)
                                 0 : do not save (disk space saving option)
                                 Default is 0 (do not save)
              .Verbose    : Turn ON/OFF verbose mode
                            (Default is 1 (ON))
              .GUIHandles : A vector of GUI handles to the SOURCEIMAGING GUI
                            when operating in graphic mode: passed automatically to bst_sourceimaging by the source imaging switchyard
                            in command line mode: leave this field empty (default).

    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%-------------------------------------------%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

### Cross-Reference Information

This function calls

    bst_message_window                 C:\BrainStorm_2001\Toolbox\bst_message_window.m
    colnorm                            C:\BrainStorm_2001\Toolbox\colnorm.m
    data_selector_cb                   C:\BrainStorm_2001\Toolbox\data_selector_cb.m
    find_brainstorm_structure          C:\BrainStorm_2001\Toolbox\find_brainstorm_structure.m
    findclosest                        C:\BrainStorm_2001\Toolbox\findclosest.m
    get_channel                        C:\BrainStorm_2001\Toolbox\get_channel.m
    get_user_directory                 C:\BrainStorm_2001\Toolbox\get_user_directory.m
    good_channel                       C:\BrainStorm_2001\Toolbox\good_channel.m
    lcmvbf                             C:\BrainStorm_2001\Toolbox\lcmvbf.m
    load_brainstorm_file               C:\BrainStorm_2001\Toolbox\load_brainstorm_file.m
    meg4read                           C:\BrainStorm_2001\Toolbox\meg4read.m
    minnorm                            C:\BrainStorm_2001\Toolbox\minnorm.m
    norcol                             C:\BrainStorm_2001\Toolbox\norcol.m
    read_gain                          C:\BrainStorm_2001\Toolbox\read_gain.m
    save_fieldnames                    C:\BrainStorm_2001\Toolbox\save_fieldnames.m

This function is called by

    bstscript_ForwardInverse_basic     C:\BrainStorm_2001\Toolbox\bstscript_ForwardInverse_basic.m
    sourceimaging                      C:\BrainStorm_2001\Toolbox\sourceimaging.m

### Listing of function C:\BrainStorm_2001\Toolbox\bst_sourceimaging.m

    function [Results,OPTIONS] = bst_sourceimaging(varargin);
    %BST_SOURCEIMAGING - Command line call to source imaging routines
    % function [Results,OPTIONS] = bst_sourceimaging(varargin);
    % function [Results] = bst_sourceimaging(varargin);
    % [Results] = bst_sourceimaging(OPTIONS)
    % [OPTIONS] = bst_sourceimaging % Returns the default OPTIONS parameters
    % [Results,OPTIONS] = bst_sourceimaging(OPTIONS) % Returns also the OPTIONS parameters supplemented by the default settings applied to empty fields in original OPTIONS
    %
    % INPUTS
    %       OPTIONS - a structure of parameters
    % OUTPUTS
    %       Results - a regular BrainStorm Results structure (see documentation for details)
    %
    % Details of the structure for OPTIONS
    %
    %   Data Information:
    %          .DataFile   : A string or Cell array of strings of actual data files requested for localization. If isempty, look for data array(s) in .Data
    %          .TimeSegment: Vector of min and max time samples (in seconds) giving first and last latencies specifying
    %                        the time window for analysis.
    %                        (Default is empty : i.e. take all time samples)
    %          .BaselineTimeSegment: Vector of min and max time samples (in seconds) giving first and last latencies specifying
    %                        the time window for baseline. A specific Results file will be created or .BaselineImageGridAmp and .BaselineImageGridTime fields
    %                        will be added to the Results output structure
    %                        (Default is empty : i.e. no baseline is used).
    %          .BaselineSegment: Again, Vector of min and max time samples (in seconds) giving first and last latencies specifying
    %                        the time window for baseline. The baseline will be
    %                        used to noise normalize the cortical maps
    %          .ChannelFlag: a vector of flags (1 for good, -1 for bad) of channels in the data file to process
    %                        (Default is ChannelFlag from data file or all good channels from data array )
    %          .DataTypes  : A scalar or a vector of codes to specidy which is the type of data to use:
    %                        1 is MEG, 2 is EEG, 3 is Fusion
    %                        (Default is all data type available)
    %          .FusionType : Code for the type of fusion to apply between MEG and EEG data
    %                        1 is linear, 2 is non-linear
    %                        (Defaut is 1)
    %          .Data       : Specify some data to be passed independently of any data file
    %                            .F : Cell array of nChannel x nTime array(s) of data.
    %                                 If not empty: uses this array as input for inverse process.
    %                            .Channel : Channel structure corresponding to data in .F
    %                            .Time : Vector specifying the time instants of data samples in .Data.F
    %                        (Default for .Data is empty)
    %
    %   Source Support Information:
    %          .GridLoc    : a string or a 3xN matrix
    %                        - if a string : specifies the name of the BrainStorm tessellation file where cortical support is stored
    %                        NOT RELEVANT : - if a matrix : contains the coordinates of the cortical locations where to compute the cortical current density
    %          .iGrid      : when .GridLoc is a file name, specify which imaging grid to use (Default is 1).
    %
    %   Forward Field Information :
    %          .HeadModelFile: Cell array of strings for filename of the BrainStorm headmodel file(s) to use for imaging. If is empty, look for.GainFile field.
    %                          There are only 2 options at this point:
    %                                - .HeadModelFile is of length 1, a single headmodel file is used for all data sets passed to the bst_sourceimaging.
    %                                - .HeadModelFile is of length the number of data sets passed to bst_sourceimaging (i.e. the length of .DataFile).
    %    NOT IMPLEMENTED YET :
    %          .GainFile   : Cell array of filenames of image gain matrix (.bin) for the selected cortical support. If is empty, look for .Gain field.
    %                        Remarks about the length of .HeadModelFile hold for .GainFile too.
    %          .Gain       : Cell array containing the gain matrix of the cortical support (either a single cell or a cell array the length the number of data sets passed to function)
    %                        Remarks about the length of .HeadModelFile hold for .GainFile too.
    %                        (Default is empty).
    %
    %   Processing Parameters :
    %          .Method     : A string that specifies the imaging method
    %                        'Minimum-Norm Imaging': MN estimate of current density using MN priors on source amplitudes (Default)
    %                        'Recursive Min. Norm.': Recursive MN estimate based on adaptation of FOCUSS (NOT AVAILABLE)
    %                        'SPTF' : Scanning technique constrained on cortical surface (see Denis Schwartz) (UNDER DEVELOPMENT)
    %                        'ST-MAP' : Non-linear imaging technique based on sparse-focal image models (NOT AVAILABLE)
    %                        'RAP-MUSIC' : link to Mosher's GUI (UNDER DEVELOPMENT)
    %                        (Default is 'Minimum-Norm Imaging')
    %          .Tikhonov   : Hyperparameter used in Tykhonov regularization
    %                        (Default is 10)
    %          .FFNormalization : Apply forward field normalization of the gain matrix
    %                        (Default is 1)
    %          .Rank       : Specify a rank for signal subspace following SVD of the spatio-temporal data matrix
    %                        (Default is full rank)
    %
    %   Output Information:
    %          .ResultFile : optional string for filename where to write results
    %                        if 'default', filename as used in GUI environment is used
    %                        (Default is '' (no Result file created))
    %          .ResultFileSaved : Cell array of strings that keeps a log of all result file names that were create during call to this function
    %                        (Default is left empty, [])
    %          .ComputeKernel : If 1, compute MN kernel to be applied subsequently to data instead of full ImageGridAmp array
    %                         CAVEAT: Relevant to Minimum-Norm source mapping only so far
    %                         (Default is 0: compute full ImageGridAmp array)
    %          .SaveModelData : 1 :Save model part of data (Fsynth) into ResultFile (if any)
    %                             0 : do not save (disk space saving option)
    %                             Default is 0 (do not save)
    %          .Verbose    : Turn ON/OFF verbose mode
    %                        (Default is 1 (ON))
    %          .GUIHandles : A vector of GUI handles to the SOURCEIMAGING GUI
    %                        when operating in graphic mode: passed automatically to bst_sourceimaging by the source imaging switchyard
    %                        in command line mode: leave this field empty (default).
    %
    %
    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%-------------------------------------------%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    %<autobegin> ---------------------- 12-Oct-2004 12:01:01 -----------------------
    % --------- Automatically Generated Comments Block Using AUTO_COMMENTS ---------
    %
    % CATEGORY: Inverse Modeling
    %
    % Alphabetical list of external functions (non-Matlab):
    %   toolbox\bst_message_window.m
    %   toolbox\bst_sourceimaging.m  NOTE: Routine calls itself explicitly
    %   toolbox\colnorm.m
    %   toolbox\data_selector_cb.m
    %   toolbox\find_brainstorm_structure.m
    %   toolbox\findclosest.m
    %   toolbox\get_channel.m
    %   toolbox\get_user_directory.m
    %   toolbox\good_channel.m
    %   toolbox\lcmvbf.m
    %   toolbox\load_brainstorm_file.m
    %   toolbox\meg4read.m
    %   toolbox\minnorm.m
    %   toolbox\norcol.m
    %   toolbox\read_gain.m
    %   toolbox\save_fieldnames.m
    %
    % At Check-in: $Author: Mosher $  $Revision: 29 $  $Date: 10/12/04 10:23a $
    %
    % This software is part of BrainStorm Toolbox Version 2.0 (Alpha) 12-Oct-2004
    %
    % Principal Investigators and Developers:
    % ** Richard M. Leahy, PhD, Signal & Image Processing Institute,
    %    University of Southern California, Los Angeles, CA
    % ** John C. Mosher, PhD, Biophysics Group,
    %    Los Alamos National Laboratory, Los Alamos, NM
    % ** Sylvain Baillet, PhD, Cognitive Neuroscience & Brain Imaging Laboratory,
    %    CNRS, Hopital de la Salpetriere, Paris, France
    %
    % See BrainStorm website at http://neuroimage.usc.edu for further information.
    %
    % Copyright (c) 2004 BrainStorm by the University of Southern California
    % This software distributed  under the terms of the GNU General Public License
    % as published by the Free Software Foundation. Further details on the GPL
    % license can be found at http://www.gnu.org/copyleft/gpl.html .
    %
    % FOR RESEARCH PURPOSES ONLY. THE SOFTWARE IS PROVIDED "AS IS," AND THE
    % UNIVERSITY OF SOUTHERN CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY
    % WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF
    % MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY
    % LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE.
    %<autoend> ------------------------ 12-Oct-2004 12:01:01 -----------------------

    % /---Script Author--------------------------------------\
    % |                                                      |
    % | *** Sylvain Baillet Ph.D.                            |
    % | Cognitive Neuroscience & Brain Imaging Laboratory    |
    % | CNRS UPR640 - LENA                                   |
    % | Hopital de la Salpetriere, Paris, France             |
    % | sylvain.baillet@chups.jussieu.fr                     |
    % |                                                      |
    % \------------------------------------------------------/
    %
    % Date of creation: October 2002
    %
    % ----------------------------- Script History ---------------------------------
    % SB 23-Dec-2002  Added the .ComputeKernel option
    %                 .Data option is now working
    % SB 21-Jan-2003  .ComputeKernel is now working and was tested
    %                  Added .SaveModelData option
    % SB 08-Oct-2003  .ResultFile field is properly returned
    % EK 4-Oct-2004   Fusion choise in the GUI and related sections in the code
    %                 are removed
    % EK 12-Oct-2004  Minor changes
    % ----------------------------- Script History ---------------------------------

    % Basic parameters
    DataType = {'MEG','EEG'}; % Data type labels
    Methods = {...
        'Minimum-Norm Imaging',...
        'Recursive Min. Norm.',...
        'ST-MAP',...
        'SPTF',...
        'RAP-MUSIC'...
        }; % Methods Labels

    % Default options settings------------------------------------------------------
    Def_OPTIONS = struct(...
        'BaselineTimeSegment',[],...
        'ChannelFlag',[],...
        'ComputeKernel',0,...
        'Data',[],...
        'DataFile','',...
        'DataTypes',[],...
        'FFNormalization', 1,...
        'Gain',[],...
        'GainFile','',...
        'GridLoc','',...
        'GUIHandles',[],...
        'iGrid',1,...
        'Method','Minimum-Norm Imaging',...
        'Rank',[],...
        'ResultFile','default',...
        'ResultFileSaved',[],...
        'SaveModelData',1,...
        'Tikhonov',10,...
        'TimeSegment',[],...
        'Verbose',1 ...
        );

    % Check arguments passed to and required from function call

    if nargin == 0
        if nargout > 1
            varargout{1} = Def_OPTIONS;
            varargout{2} = Def_OPTIONS;
        else
            varargout{1} = Def_OPTIONS;
        end
        return
    elseif nargin == 1
        if ~isstruct(varargin{1})
            errordlg('Uncorrect input parameter type, please check the help file'), varargout = cell(nargout,1);
            return,
        end
        OPTIONS = varargin{1};
    elseif nargin == 2 % too many input arguments
        errordlg('Wrong number of arguments when calling source imaging tool')
        varargout = cell(nargout,1);
        return
    end

    % Check field names of passed OPTIONS and fill missing ones with default values
    DefFieldNames = fieldnames(Def_OPTIONS);
    for k = 1:length(DefFieldNames)
        if ~isfield(OPTIONS,DefFieldNames{k})

            OPTIONS = setfield(OPTIONS,DefFieldNames{k},getfield(Def_OPTIONS,DefFieldNames{k}));

        end
    end

    clear Def_OPTIONS

    % Default options settings : DONE---------------------------------------------------------------------------------------

    % Load Data Information-------------------------------------------------------------------------------------------------

    UseBaseline = ~isempty(OPTIONS.BaselineTimeSegment); % Was a baseline defined for the data sets ? (1 is yes)

    if ~iscell(OPTIONS.HeadModelFile) % A single headmodel file was specified in a string - transform to generic case : a cell
        OPTIONS.HeadModelFile = {OPTIONS.HeadModelFile};
    end

    % Loop operating on every dataset requested for processing

    if ~isempty(OPTIONS.DataFile) % Data is stored in regular BsT datafile(s)

        DATA = OPTIONS.DataFile;
        DataArray = 0; % Flag meaning data is not stored in an array but in a file

    elseif ~isempty(OPTIONS.Data) % Direct access to data array(s)

        DATA = [];
        DataArray = 1; % Flag meaning data is stored in an array, bot in a file

    else % No data was given : return
        if OPTIONS.Verbose
            bst_message_window('No data was passed to BST_SOURCEIMAGING for processing: abort')
        end
        return
    end

    if ~iscell(DATA) % Transform DATA in cell array
        DATA = {DATA};
    end

    for kDATA = 1:length(DATA) % Loop on every data set

        if ~isempty(OPTIONS.GUIHandles) & OPTIONS.Verbose & ~DataArray
            bst_message_window({' ',DATA{kDATA}})

        elseif OPTIONS.Verbose & ~DataArray
            disp(char( {' ',DATA{kDATA} } ))

        elseif OPTIONS.Verbose & DataArray
            bst_message_window('Running inverse process on data array. . .')
        end

        if kDATA == 1 % Time segment and ChannelFlag assumed to be the same for all data sets passed to function

            if ~isempty(OPTIONS.TimeSegment) | isempty(OPTIONS.SegmentIndices) % User provided time indices rather than absolute time samples in seconds.
                % Default Time Segment: the whole set of time samples
                if ~DataArray
                    load(DATA{kDATA},'Time') % Load available time samples (in seconds)
                    TimeInd = findclosest([OPTIONS.TimeSegment(1) OPTIONS.TimeSegment(2)],Time'); %get the indices for start and stop points
                    OPTIONS.SampleRate = mean(diff(Time(TimeInd))); % (in sec)
                    OPTIONS.TimeSegment = [Time(TimeInd(1)) Time(TimeInd(end))]; % Time segment (min max only, in sec)
                    OPTIONS.SegmentIndices = TimeInd(1):TimeInd(end); % Full time segment (in sample indices)

                    if OPTIONS.NNormalization
                        BaselineInd = findclosest([OPTIONS.BaselineSegment(1) OPTIONS.BaselineSegment(2)],Time'); %get the indices for start and stop points
                        OPTIONS.SampleNoiseRate = mean(diff(Time(BaselineInd))); % (in sec)
                        OPTIONS.BaselineSegment = [Time(BaselineInd(1)) Time(BaselineInd(end))]; % Time segment (min max only, in sec)
                        OPTIONS.NoiseSegmentIndices = BaselineInd(1):BaselineInd(end); % Full Baseline segment (in sample in
                        if length(OPTIONS.NoiseSegmentIndices)<3
                            bst_message_window('wrap', {'Baseline region doesnot have enough time slices. Select a different noise region'                })
                            Results = []; % If selected noise region is too small give a msg to change it
                            return
                        end

                    end

                    clear Time
                else
                    if ~isempty(OPTIONS.Data.Time)
                        OPTIONS.TimeSegment = OPTIONS.Data.Time;
                    else
                        OPTIONS.TimeSegment = [1:size(OPTIONS.Data.F,2)];
                    end
                    OPTIONS.SegmentIndices = [1:size(OPTIONS.Data.F,2)];
                end

            end

            if ~DataArray & isempty(OPTIONS.ChannelFlag) % Data file is specified but no ChannelFlag entry in OPTIONS
                load(DATA{kDATA},'ChannelFlag')
            elseif DataArray & isempty(OPTIONS.ChannelFlag) % Data matrix is passed to function but no ChannelFlag: use all rows.
                OPTIONS.ChannelFlag = ones(size(DATA{kDATA},1),1);
            end

            % Channel information
            if ~DataArray

                [tmp,channelFileName] = get_channel(DATA{kDATA});
                OPTIONS.ChannelFile = fullfile(fileparts(DATA{kDATA}),channelFileName);

            else
                if isempty(OPTIONS.Data.Channel)
                    errordlg('A channel structure needs to be specified in OPTIONS.Data.Channel when data is stored in an array')
                end
                OPTIONS.Channel = OPTIONS.Data.Channel;
            end

            if isempty(OPTIONS.DataTypes) & ~DataArray % Modality not specified - use all available, therefore load Channel information from channel file
                load(OPTIONS.ChannelFile)
                % Now find whether we have EEG and MEG available
                tmpChannelFlag = ones(length(Channel),1);
                MEGChans = good_channel(Channel,ChannelFlag,'MEG');
                EEGChans = good_channel(Channel,ChannelFlag,'MEG');
                if ~isempty(MEGChans)
                    OPTIONS.DataTypes = [OPTIONS.DataTypes,1];
                end
                if ~isempty(EEGChans)
                    OPTIONS.DataTypes = [OPTIONS.DataTypes,2];
                end

            elseif isempty(OPTIONS.DataTypes) & DataArray
                error('Please define the .DataTypes OPTION when computing inverse solution from a data array')
                return
            end
        end

        % Gain / HeadModel information
        % Load Headmodel information
        if ~isempty(OPTIONS.HeadModelFile{1}) % User passed HeadModel file names
            % Now manage situation where user has passed either a single or multiple headmodel files
            if length(OPTIONS.HeadModelFile) == 1 % A single headmodel will be used for all data sets
                iHMFile = 1; % Still use first headmodel
            else
                iHMFile = kDATA; % Use headmodel associated to current data set.
            end

            if exist(OPTIONS.HeadModelFile{iHMFile},'file') % User has passed a valid Headmodelfile name
                HeadModelFileWhos = whos('-file',OPTIONS.HeadModelFile{iHMFile});
                if isempty(find(strcmp(cellstr(char(HeadModelFileWhos(:).name)),'GridLoc')))
                    errordlg({...
                        sprintf('%s is an HeadModel file from an older BrainStorm version.',OPTIONS.HeadModelFile{iHMFile}),...
                        sprintf('Please compute it again with new Headmodeling tool.')},...
                        'Headmodel file from older BrainStorm version')
                    return
                end

                % Load Image Support Information
                load(OPTIONS.HeadModelFile{iHMFile},'GridLoc');
                % Load Tessellation information
                if length(GridLoc) > 1 %| size(GridLoc{1},1) ~= 3
                    errordlg({...
                        sprintf('%s is an HeadModel file from an older BrainStorm version.',OPTIONS.HeadModelFile{iHMFile}),...
                        sprintf('Please compute it again with new Headmodeling tool.')},...
                        'Headmodel file from older BrainStorm version')
                    return
                end

                if isempty(OPTIONS.GridLoc)
                    OPTIONS.GridLoc = GridLoc{1};
                end

                if ischar(OPTIONS.GridLoc) % Source locations are vertices of a tessellated envelope
                    if ~exist(OPTIONS.GridLoc,'file') % Tessellation file does not exist
                        if ~isempty(OPTIONS.GUIHandles) % User plays with GUIs
                            func = 'errordlg'; % Use a error message window
                        else
                            func = 'disp';
                        end
                        DisplayString = {
                            sprintf('Tessellation file %s was not found in Matlab''s path.',OPTIONS.GridLoc),...
                            sprintf('Please update your session''s Matlab path using the GENPATH and ADDPATH commands with the STUDIES and SUBJECTS folders.')...
                            };

                        eval([func,'(char(DisplayString))'])
                        Results = [];
                        return
                    end

                    % Load Tessellation Information
                    load(OPTIONS.GridLoc);
                    HeadModelWhos = whos('-file',OPTIONS.HeadModelFile{iHMFile}); % Look for variables in headmodel file
                    if ~isempty(find(strcmp(cellstr(char(HeadModelWhos(:).name)),'iGrid'))) % See note above
                        tmp = load(OPTIONS.HeadModelFile{iHMFile},'iGrid');
                        OPTIONS.iGrid = tmp.iGrid; clear tmp
                    else
                        OPTIONS.iGrid = 1;
                    end
                    Faces = Faces{OPTIONS.iGrid}; Vertices = Vertices{OPTIONS.iGrid};

                    %             else
                    %                 bst_message_window({...
                    %                         sprintf('HeadModel File %s was not found',OPTIONS.HeadModelFile{1}),...
                    %                         'Inverse computation aborted.'...
                    %                     })
                    %
                end
            end

        elseif isempty(OPTIONS.Gain)
            % No headmodel file, no gain matrix : error
            error(...
                sprintf('Please specify a HeadModel file or a Gain matrix when calling %s',upper(mfilename))...
                )
        end % User has passed a BrainStorm HeadModel file

        if strcmpi(OPTIONS.ResultFile,'default') % Use default name
            ResultFileNameDefault = 1; % Flag meaning default result file name is assumed for every data set
        else
            ResultFileNameDefault = 0;
        end

        for tmp = OPTIONS.DataTypes % For each selected modality

            OPTIONS.DataType = tmp;

            if OPTIONS.Verbose
                bst_message_window('wrap', {...
                    ' ',...
                    OPTIONS.Method,...
                    sprintf('Processing %s Data. . .',DataType{OPTIONS.DataType})...
                    })
            end

            % Name for Result file ------------------------------------------------------------------------------------------------------
            if ResultFileNameDefault == 1;%strcmpi(OPTIONS.ResultFile,'default') % Use default name

                ResultFileNameDefault = 1; % Flag meaning default result file name is assumed for every data set

                switch(OPTIONS.Method)
                    case 'Minimum-Norm Imaging'
                        MethodeCode = ['MNE_',DataType{OPTIONS.DataType}];
                    case 'LCMV Beamformer'
                        MethodeCode = ['LCMFBF_',DataType{OPTIONS.DataType}];
                    case 'Recursive Min. Norm.'
                        MethodeCode = ['RMN_',DataType{OPTIONS.DataType}];;
                    case 'RAP-MUSIC'
                        MethodeCode = ['RAP_',DataType{OPTIONS.DataType}];;
                    case 'SPTF'
                        MethodeCode = ['SPTF_',DataType{OPTIONS.DataType}];;
                    otherwise
                        errordlg('Please choose a method for source localization from the list')
                        return
                end

                % now hash together a results name
                if ~DataArray
                    [PATH,NAME,EXT,VER] = fileparts(DATA{kDATA});
                    NAME = strrep(NAME,'data','results');
                else
                    PATH = pwd;
                    NAME = 'DataArray';
                end

                c = clock;
                OPTIONS.ResultFile = fullfile(PATH,[NAME sprintf('_%s_%02.0f%02.0f',MethodeCode,c(4:5)) EXT VER]);
                i = 0;
                while(exist(OPTIONS.ResultFile,'file')),
                    i = i+1; % subtract another minute
                    c(5) = mod(c(5) - 1,60);
                    OPTIONS.ResultFile = fullfile(PATH,[NAME sprintf('_%s_%02.0f%02.0f',MethodeCode,c(4),c(5)) EXT VER]);
                end
                %OPTIONS.ResultFile = OPTIONS.ResultFile;

                if UseBaseline % Associated Baseline Results file
                    OPTIONSBaseline = OPTIONS; % Fill out a specific OPTIONS structure for inverse processing of Baseline
                    OPTIONSBaseline.ResultFile = strrep(OPTIONS.ResultFile,'.mat','_baseline.mat');
                    while(exist(OPTIONSBaseline.ResultFile,'file')),
                        i = i+1; % subtract another minute
                        c(5) = mod(c(5) - 1,60);
                        OPTIONSBaseline.ResultFile = fullfile(PATH,[NAME sprintf('_%s_%02.0f%02.0f',MethodeCode,c(4),c(5)),'_baseline' EXT VER]);
                    end
                    %OPTIONSBaseline.Results = OPTIONS.ResultFile;
                end

                %         else % ResultFile name is provided by user and is different than 'default'
                %             ResultFileNameDefault = 0; %
            end

            CurrentOPTIONS = OPTIONS; % Duplicate the OPTIONS field before calling imaging routines on current data set
            % Alter fields specific to current data set (HeadModels, GridLoc, etc.)
            CurrentOPTIONS.HeadModelFile = OPTIONS.HeadModelFile{iHMFile};
            if ~DataArray
                CurrentOPTIONS.DataFile = DATA{kDATA};
            else
                CurrentOPTIONS.DataFile = '';
                CurrentOPTIONS.Data = OPTIONS.Data;
                UseBaseline = 0;
            end

            if UseBaseline
                OPTIONSBaseline.HeadModelFile = OPTIONS.HeadModelFile{iHMFile};
                OPTIONSBaseline.DataFile = DATA{kDATA};
                OPTIONSBaseline.TimeSegment = OPTIONS.BaselineTimeSegment;
                OPTIONSBaseline.SegmentIndices = OPTIONS.BaselineSegmentIndices;
            end

            % Switchyard to available imaging method-----------------------------------------------------------------------------------
            switch( OPTIONS.Method )

                case 'Minimum-Norm Imaging'

                    % Here we go :
                    Results = minnorm(CurrentOPTIONS);
                case 'LCMV Beamformer'
                    Results = lcmvbf(CurrentOPTIONS);

            end

            % Compute residuals --------------------------------------------------------------------------------------------------------------
            GoodChannel = good_channel(Results.Channel,OPTIONS.ChannelFlag,DataType{OPTIONS.DataType}); %good channels for selected modality
            if ~DataArray
                load(Results.DataFile,'F'); % Load data
                if ischar(F) % Data is in native file format
                    F = meg4read(F,OPTIONS.Trial,OPTIONS.SegmentIndices,OPTIONS.Verbose);
                    F = F(GoodChannel,:);
                else
                    % Block of analyzed data
                    F = F(GoodChannel,OPTIONS.SegmentIndices);
                end
            else
                F = OPTIONS.Data.F;
                % Block of analyzed data
                F = F(GoodChannel,OPTIONS.SegmentIndices);
            end

            clear Channel
            % ESEN Do it if Fsynth is available--not available for LCMV if
            % neural index is calculated
            if length(Results.Fsynth)
                Results.Residuals = 100*sqrt(norcol(F-Results.Fsynth)./norcol(F)); % norcol return the square of the column norms
                rms_res = 100*norm(F-Results.Fsynth,'fro')/norm(F,'fro');
                % Compute basic statistics on residuals
                mean_res = mean(Results.Residuals);
                std_res = std(Results.Residuals);
                min_res = min(Results.Residuals);
                max_res = max(Results.Residuals);
                if OPTIONS.Verbose
                    DisplayString = {...
                        'Residuals:',...
                        sprintf('RMS: %3.1f%%',rms_res),...
                        sprintf('Std.: %3.1f%%',std_res),...
                        sprintf('Min.: %3.1f%%',min_res),...
                        sprintf('Max.: %3.1f%%',max_res)...
                        };

                    bst_message_window(DisplayString);
                end

            end
            clear F;

            if OPTIONS.SaveModelData == 0
                Results.Fsynth = [];
            end

            if ~isempty(OPTIONS.ResultFile)
                % Save Results into file
                save_fieldnames(Results,OPTIONS.ResultFile);
                bst_message_window('wrap',...
                    sprintf('Saved in: %s',strrep(OPTIONS.ResultFile,fileparts(OPTIONS.ResultFile),''))...
                    ); % Display only file name without path
            end

            % -------------------------------------------------------------------------------------------------------------------------------

            if UseBaseline % Compute source maps during baseline
                if ~isempty(OPTIONS.GUIHandles)
                    set(OPTIONS.GUIHandles.Tstatustxt,'String','Now computing source maps on baseline segment...'), drawnow
                end

                if OPTIONS.Verbose
                    bst_message_window({'','Analysing baseline segment. . .'})
                end

                if ~isempty(OPTIONS.ResultFile) % if result file is requested from user
                    Results.ZScore.BaselineFile = OPTIONSBaseline.ResultFile; % append baseline information to original Results structure
                    save_fieldnames(Results,OPTIONS.ResultFile,'-append');
                end

                % Run estimation of Baseline source map.
                ResultsBaseline = minnorm(OPTIONSBaseline);

                % Compute residuals on Baseline------------------------------------------------------------------------------------------------------
                load(ResultsBaseline.DataFile,'F'); % Load data
                GoodChannel = good_channel(ResultsBaseline.Channel,OPTIONSBaseline.ChannelFlag,DataType{OPTIONSBaseline.DataType}); %good channels for selected modality

                % Block of analyzed data
                F = F(GoodChannel,[OPTIONSBaseline.SegmentIndices]);

                clear Channel
                ResultsBaseline.Residuals = 100*sqrt(norcol(F-ResultsBaseline.Fsynth)./norcol(F));
                Baselinerms_res = 100*norm(F-ResultsBaseline.Fsynth,'fro')/norm(F,'fro');
                clear F;

                % Compute basic statistics on residuals
                Baselinemean_res = mean(ResultsBaseline.Residuals);
                Baselinestd_res = std(ResultsBaseline.Residuals);
                Baselinemin_res = min(ResultsBaseline.Residuals);
                Baselinemax_res = max(ResultsBaseline.Residuals);

                if OPTIONS.SaveModelData == 0
                    ResultsBaseline.Fsynth = [];
                end

                if ~isempty(OPTIONSBaseline.ResultFile)
                    % Save Results into file
                    save_fieldnames(ResultsBaseline,OPTIONSBaseline.ResultFile);
                    bst_message_window('wrap',...
                        sprintf('Baseline Results saved in: %s',strrep(OPTIONSBaseline.ResultFile,fileparts(OPTIONSBaseline.ResultFile),''))...
                        ); % Display only file name without path
                end

                if OPTIONS.Verbose & UseBaseline
                    DisplayString{end+1} = 'Residuals (baseline)';
                    DisplayString{end+1} = sprintf('RMS: %4.2f%% - Std.: %4.2f%%',Baselinerms_res,Baselinestd_res);
                    DisplayString{end+1} = sprintf('Min.: %4.2f%% - Max.: %4.2f%%',Baselinemin_res,Baselinemax_res);
                    DisplayString{end+1} = '---------------------------------------------------';
                end

                if OPTIONS.Verbose
                    bst_message_window('wrap',DisplayString)
                end

            end

            % Display Residuals performances on analysis time window

            % ESEN We don't have Tstatustxt anymore
            %         if ~isempty(OPTIONS.GUIHandles)
            %             set(OPTIONS.GUIHandles.Tstatustxt,'String',DisplayString)
            %         end
            %ESEN

            %---------------------------------------------------------------------

        end % For each selected modality

        if ResultFileNameDefault == 1
            Users = get_user_directory;
            OPTIONS.ResultFileSaved{end+1} = strrep(OPTIONS.ResultFile,[Users.STUDIES,filesep],''); % Keep log of result files
            OPTIONS.ResultFile = 'default'; %for next data set
        end

    end % For each dataset

    if OPTIONS.Verbose
        bst_message_window({...
            ' ',...
            '---------> Done with Source Imaging'...
            })
    end

    switch( 0) % Older stuff

        case 'SPTF'
            %Get Study File
            %Filename = (Users.CurrentData.StudyFile);
            StudySubject = find_brainstorm_structure(Users.CurrentData.StudyFile);

            % Now load in the necessary data

            cd(Users.SUBJECTS)
            if(~isempty(StudySubject.Subject)),
                try
                    Subject = load(fullfile(Users.SUBJECTS,StudySubject.Subject)); %load all of the information on the subject
                catch
                    cd(Users.SUBJECTS)
                    Subject = load(fullfile(Users.SUBJECTS,StudySubject.Subject)); %load all of the information on the subject
                end

                cd(Users.SUBJECTS)
                load(Subject.Tesselation,'Vertices');
                nv = size(Vertices{OPTIONS.iGrid}',1); % number of grid points
            else
                Subject = [];
            end

            Study = load_brainstorm_file(StudySubject.Study); % and the study information

            % load up the information needed for the gain matrix
            cd(Users.STUDIES)
            try
                if strcmp(OPTIONS.Column_norm,'n')
                    HeadModel = load(StudySubject.HeadModel,'Function','Param',...
                        'ImageGridLoc','ImageGain','ImageGainCovar'); % expensive load
                else
                    HeadModel = load(StudySubject.HeadModel,'Function','Param',...
                        'ImageGridLoc','ImageGain','ImageGainCovar','ImageGainCovar_ColNorm'); % expensive load

                end

            catch

                errordlg([StudySubject.HeadModel, '  be incomplete. Please make sure the forward problem (head model) has been solved for this study'])
                return

            end

            try
                if(isempty(HeadModel.ImageGain{OPTIONS.iGrid})),
                    msgbox('Your Grid Gain Matrix is empty, please run Head Modeler to build it for the selected cortical surface or try another cortex tessellation available','Error','modal');
                    return
                end
                %     if(isempty(HeadModel.ImageGainCovar{OPTIONS.iGrid})),
                %         disp(' ')
                %         disp('Your Grid Gain Correlation matrix is empty, consider running Head Modeler to build');
                %         disp(' ')
                %     end
            catch
                errordlg([StudySubject.HeadModel, ' may be incomplete. Please make sure the forward problem (head model) has been solved for this study'])
                return
            end

            if(~isempty(findstr('_results',deblank(lower(OPTIONS.DataName))))),
                % CHEAT
                % The DataName has the string '_results' in it
                % We are trying to treat independent topographies as min norm data. Eventually this
                %  capability will be moved to a new routine.
                % name has the string '_results' in it
                Results = load(OPTIONS.DataName);
                % now synthesize a Data structure from this
                [ignorm,Anrm] = colnorm(Results.IndepTopo);

                Data = struct('F',Anrm,'ChannelFlag',Results.ChannelFlag,...
                    'Time',[1:size(Results.IndepTopo,2)],... % time is now simply an indexer
                    'NoiseCov',Results.NoiseCov,'SourceCov',Results.SourceCov,'Projector',Results.Projector,...
                    'Comment',sprintf('Synthesized Data Set from Results: %s',Results.Comment));
            else
                % assume it is a standard data file
                Data = load(OPTIONS.DataName,'F','ChannelFlag','Time','Projector','Comment');
            end

            Channel = load(StudySubject.Channel);
            Channel = Channel.Channel;

            % now alter the data according to the bad channels

            GoodChannel = good_channel(Channel,OPTIONS.ChannelFlag,DataType{OPTIONS.DataType}); %good channels for selected modality

            EEGChannel = good_channel(Channel,ones(size(Channel)),'EEG');
            MEGChannel = good_channel(Channel,ones(size(Channel)),'MEG');

            Data.F = Data.F(GoodChannel,:); % good channels only

            %nv = size(Vertices{OPTIONS.iGrid}',1); % number of grid points
            GainFile = fullfile(fileparts(StudySubject.HeadModel),HeadModel.ImageGain{OPTIONS.iGrid}{1});

            switch(OPTIONS.DataType)
                case 1
                    HeadModel = load(StudySubject.HeadModel,'Function','Param');
                    G = feval(HeadModel.Function{MEGChannel(1)},Vertices{OPTIONS.iGrid},...
                        Channel(MEGChannel),HeadModel.Param(MEGChannel),-1);

                    %% cd(Users.STUDIES)
                    %% G = read_gain(GainFile,MEGChannel,1:nv); %% Direction constraint
                case 2
                    G = read_gain(GainFile,EEGChannel,1:nv);
                case 3
                    errordlg('Not implemented yet')
            end

            % Here we go :
            set(handles.Residuals,'String','...')

            set(handles.Tstatustxt,'String',sprintf('Status:\nQuite busy at the moment...'))

            clear ImageGridAmp

            %% ImageGridAmp = sptfd(G, Data.F, [OPTIONS.Segment(1)], [OPTIONS.Segment(end)], 10, 1, 6)' ; %% Direction constraint
            ImageGridAmp = sptfd(G, Data.F, [OPTIONS.Segment(1)], [OPTIONS.Segment(end)], 10, 1, 6)' ; %% without Direction constraint

            Comment = sprintf('SPTF, rank %.0f',OPTIONS.Rank);
            Date = datestr(datenum(now),0);
            Subject = Subject;
            Study = Study;
            Time = [OPTIONS.Segment(1):1:OPTIONS.Segment(end)-10];
            NoiseCov = [];
            SourceCov = [];
            Projector = Visu.Data.Projector;
            SourceLoc = [];
            SourceOrder = [];
            SourceOrientation = cell(1);
            ModelGain = [];
            IndepTopo = [];
            TimeSeries = [];
            PatchNdx = [];
            PatchAmp = [];
            ImageGridTime =  Visu.Data.Time(Time);
            Function = 'sptfa'; % name of this calling routine
            Fsynth = [];%G*ImageGridAmp;

            Results = struct('Comment',Comment,'Function',mfilename,'StudySubject',StudySubject,...
                'GUI',GUI,'Date','','Subject',Subject,'Study',Study,'Time',Time,...
                'ChannelFlag',Visu.Data.ChannelFlag,'NoiseCov',NoiseCov,'SourceCov',SourceCov,...
                'Projector',Projector,'SourceLoc',SourceLoc,'SourceOrder',SourceOrder,...
                'SourceOrientation',[],'ModelGain',ModelGain,...
                'IndepTopo',IndepTopo,'TimeSeries',TimeSeries,'PatchNdx',PatchNdx,...
                'PatchAmp',PatchAmp,'ImageGridAmp',ImageGridAmp,'ImageGridTime',ImageGridTime,'Fsynth',Fsynth);
            Results.SourceOrientation = SourceOrientation; % struct command could kron out

            ChannelFlag = Visu.Data.ChannelFlag;

            if(isfield(GUI,'Results')), %user provided such a string
                if(~isempty(OPTIONS.ResultFile)), % and it's not empty
                    cd(Users.STUDIES)
                    save(OPTIONS.ResultFile,'Comment','Function','StudySubject','GUI','Date','Subject','Study','Time',...
                        'ChannelFlag','NoiseCov','SourceCov','Projector','SourceLoc','SourceOrder',...
                        'SourceOrientation','ModelGain','IndepTopo','TimeSeries','PatchNdx',...
                        'PatchAmp','ImageGridAmp','ImageGridTime','Fsynth');
                    msgbox(sprintf('Wrote results to %s',OPTIONS.ResultFile),'Notice','modal');
                end
            end

            set(handles.Tstatustxt,'String',sprintf('Status:\n\nReady'))

            %---------------------------------------------------------------------

        case 'Recursive Min. Norm.'
            OPTIONS.Lamda = str2num(get(handles.Lamda,'String'));
            errpot = .1;

            % Load Gain Matrix
            StudySubject = find_brainstorm_structure(Users.CurrentData.StudyFile);
            [path,file] = fileparts(StudySubject.Study);
            cd(fullfile(Users.STUDIES,path));

            if(~isempty(StudySubject.Subject)),
                Subject = load(fullfile(Users.SUBJECTS,StudySubject.Subject)); %load all of the information on the subject
            else
                Subject = [];
            end
            Study = load_brainstorm_file(StudySubject.Study); % and the study information

            load(StudySubject.HeadModel,'ImageGain');
            iCortex  = get(handles.LHeadModels,'Userdata');

            G = read_gain(ImageGain{iCortex(get(handles.LHeadModels,'Value'))}{1},GoodChannel,[]);

            [ImageGridAmp,lamda,res] = bst_mnef(G,Visu.Data.F(GoodChannel,[OPTIONS.Segment(1):OPTIONS.Segment(end)]),OPTIONS.Lamda,errpot);

            % now map to results

            Comment = sprintf('FOCAL MIN NORM, rank %.0f',OPTIONS.Rank);
            Date = datestr(datenum(now),0);
            Subject = Subject;
            Study = Study;
            Time = [OPTIONS.Segment(1):OPTIONS.Segment(end)];
            NoiseCov = [];
            SourceCov = [];
            Projector = Visu.Data.Projector;
            SourceLoc = [];
            SourceOrder = [];
            SourceOrientation = cell(1);
            ModelGain = [];
            IndepTopo = [];
            TimeSeries = [];
            PatchNdx = [];
            PatchAmp = [];
            ImageGridTime = Visu.Data.Time(Time);
            Function = 'focuss'; % name of this calling routine
            Fsynth = G*ImageGridAmp;

            Results = struct('Comment',Comment,'Function',mfilename,'StudySubject',StudySubject,...
                'GUI',GUI,'Date','','Subject',Subject,'Study',Study,'Time',Time,...
                'ChannelFlag',Visu.Data.ChannelFlag,'NoiseCov',NoiseCov,'SourceCov',SourceCov,...
                'Projector',Projector,'SourceLoc',SourceLoc,'SourceOrder',SourceOrder,...
                'SourceOrientation',[],'ModelGain',ModelGain,...
                'IndepTopo',IndepTopo,'TimeSeries',TimeSeries,'PatchNdx',PatchNdx,...
                'PatchAmp',PatchAmp,'ImageGridAmp',ImageGridAmp,'ImageGridTime',ImageGridTime,'Fsynth',Fsynth);
            Results.SourceOrientation = SourceOrientation; % struct command could kron out

            ChannelFlag = Visu.Data.ChannelFlag;

            if(isfield(GUI,'Results')), %user provided such a string
                if(~isempty(OPTIONS.ResultFile)), % and it's not empty
                    cd(Users.STUDIES)
                    save(OPTIONS.ResultFile,'Comment','Function','StudySubject','GUI','Date','Subject','Study','Time',...
                        'ChannelFlag','NoiseCov','SourceCov','Projector','SourceLoc','SourceOrder',...
                        'SourceOrientation','ModelGain','IndepTopo','TimeSeries','PatchNdx',...
                        'PatchAmp','ImageGridAmp','ImageGridTime','Fsynth');
                    msgbox(sprintf('Wrote results to %s',OPTIONS.ResultFile),'Notice','modal');
                end
            end

            %-----------------------------------------------------------------------------------------------------

        case 'ST-MAP'
            OPTIONS.LamdaTime = str2num(get(handles.LamdaTime,'String'));
            if isempty(OPTIONS.LamdaTime)
                OPTIONS.LamdaTime = 0;
            end
            OPTIONS.Lamda = str2num(get(handles.Lamda,'String'));
            errpot = .1;

            % Load Gain Matrix
            StudySubject = find_brainstorm_structure(Users.CurrentData.StudyFile);
            [path,file] = fileparts(StudySubject.Study);
            cd(fullfile(Users.STUDIES,path));

            if(~isempty(StudySubject.Subject)),
                Subject = load(fullfile(Users.SUBJECTS,StudySubject.Subject)); %load all of the information on the subject
            else
                Subject = [];
            end
            Study = load_brainstorm_file(StudySubject.Study); % and the study information

            load(StudySubject.HeadModel,'ImageGain');
            iCortex  = get(handles.LHeadModels,'Userdata');

            G = read_gain(ImageGain{iCortex(get(handles.LHeadModels,'Value'))}{1},GoodChannel,[]);

            %Neighborhood System File
            cd(Users.SUBJECTS)
            NSFile = strrep(Visu.Tesselation,'.mat','_NeighSys.mat');
            if exist(NSFile,'file')
                load(NSFile)
            else
                bst_sourceimaging('CorticalNeighborhoodSystem')
            end

            load(Visu.Tesselation,'Vertices');
            Vertices = Vertices{iCortex}';

            method = 'mn' ; % 'mn' or 'mg' minnnom or minnorm gradient
            [ImageGridAmp, lamda, residuals] = ...
                bst_STMAP(G,Visu.Data.F(GoodChannel,[OPTIONS.Segment(1):OPTIONS.Segment(end)]),Vertices,NSFile,OPTIONS.Lamda,OPTIONS.LamdaTime,method,errpot);

        case 'RAP-MUSIC'
            bst_sourceimaging SubspaceSelection;
            data_selector_cb('rap-music')
    end

Produced by color_mat2html, a customized BrainStorm 2.0 (Alpha) version of mat2html on Tue Nov 2 16:17:59 2004
Cross-Directory links are: ON