[Master Index] [Index for Toolbox]

# contents

## (Toolbox/contents.m in BrainStorm 2.0 (Alpha))

### Help Text

     BrainStorm Toolbox
     Version 2.0 (Alpha) 02-Nov-2004
     Contents Generated by make_contents on 02-Nov-2004 14:31:32

     Files Sorted first by Category, then alphabetical, listed with first help line.
     A * indicates the H1 line begins with the filename.

     Category: Data Processing

      bst_extractmarkersctf.m * - Extract signal block from a .ds CTF data set
      bst_readmarkerfilectf.m * - read_markerf reads the CTF markerfile MarkerFile.mrk
      covariance_plots.fig    GUI figure for covariance_plots.m
      covariance_plots.m      * - M-file for covariance_generator, covariance_plots
      ds2brainstorm.m         * - Convert a DS CTF dataset into BrainStorm format
      eeg2bs.m                * - (fnamein,fnameout,type,channel)
      extract_channels.m      * - Extract the channels to be used in this particular run
      extract_ctf_markers.m   * - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
      load_fif_apos.m         * - Load in position information from Neuromag 122 ".apos" file
      load_fif_asc.m          * - Load data from Neuromag 122 .fif file converted to ascii
      load_smf.m              * - Load a simply written SMF file into the faces vertices structure
      meg4write.m             * - WRITE CTF MEG4 file format
      mesh2brainstorm.m       * - Import .mesh tessellation files (BrainVisa interchange)
      readdsgl.m              * - Loads a BrainSuite .dsgl format tessellation file.
      readmarkerfile_ctf.m    * - Read marker information from CTF MarkerFile.mrk
      save_smf.m              * - Save out a file in a simple form of the SMF format
      tri2brainstorm.m        * - Read .tri file into BrainStorm format

     Category: Database Management

      browse_study_folder.m          * - Find all *brainstormstudy.mat files in a directory tree
      eeg_load_scan3avg.m            * - Read a NeuroScan 3.x AVG File
      elpos2bs.m                     * - this function converts electrode position files into BrainStorm Channel format
      find_mfiles.m                  * - Find m-files that open a particular figure handle or the GCF
      help_manager.fig               GUI figure for help_manager.m, bst_static_taskbar.m
      help_manager.m                 * - Application M-file for help_manager.fig
      load_brainstorm_file.m         * - load or try to find and load the BrainStorm file.
      make_default_database.m        * - Confirm or Create a default database, default study, default subject
      make_default_study.m           * - Create simulated default data and link to a simulated subject
      make_default_subject.m         * - Make a brainstormsubject and simulated MRI in a folder
      phantom_channel_assignment.fig GUI figure for phantom_channel_assignment.m, tess_align_tool.m
      phantom_channel_assignment.m   * - Application M-file for phantom_channel_assignment.fig
      read_besa.m                    * - (overwrite succinct one line summary here)

     Category: Forward Modeling

      bem_gain.m                 * - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
      bem_kernel.m               * - computes kernel matrices for EEG and MEG
      bem_xfer.m                 * - Computation of the MEG and/or EEG BEM transfer matrices
      berg.m                     * - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
      bestfitsph.m               * - Find best fitting sphere
      bst_headmodeler.m          * - Solution to the MEG/EEG forward problem
      carto_sensors.m            * - (Rcoils,v);
      eeg_bem.m                  * - Calculate the electric potential , BEM approach, arbitrary orientation
      eeg_sph.m                  * - Calculate the electric potential , spherical head, arbitrary orientation
      gain_interp.m              * - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
      get_gain.m                 * - Get a set of source foward fields from a .bin gain matrix file
      good_channel.m             * - Extract channels of a given type
      gridmaker.m                * - 3D regular gridding of surface envelope
      hrow_linear.m              * - Compute row in BEM geometry matrix for linear collocation
      kl_galerkin.m              * - Galerking kernel for BEM of linear model
      kl_gram.m                  * - Kernel computation used in bem_xfer
      meg_bem.m                  * - Calculate the mag field, BEM approach, arbitrary orientation
      os_meg.m                   * - Calculate the (overlapping) sphere models for MEG
      overlapping_sphere.m       * - Create overlapping spheres for E/MEG channels.
      overlapping_sphere_fmins.m * - for use with OVERLAPPING_SPHERE
      read_gain.m                * - Extract parts or a compete gain matrix from .bin binay gain file
      sensor_122.m               * - Return the Neuromag 122 information
      sensor_axial.m             * - Generate axial gradiometers
      sensor_planar.m            * - Generate planar gradiometers
      sensor_ring.m              * - Generate rings of sensors about a sphere roughly uniformly spaced.
      sensor_spacing.m           * - generate sites roughly evenly spaced about a hemisphere.
      solid_angle2.m             * - Solid angle of a viewed triangle
      source_grid.m              * - generate variable grid of possible source locations
      source_grids.m             * - Generate source grids for parametric model searches
      source_tess.m              * - generate variable grid of possible source locations
      tesselate.m                * - tesselate based on the sensor_ring program
      trans_matrix.m             * - calculate BEM transfer matrices for EEG and MEG
      tri_interp.m               * - Compute the interpolation matrix from a cortical tessellation to the MRI volume
      weighting_scalar.m         * - For use with Overlapping Sphere
      zhang_fit.m                * - Compute 'Berg' parameters for EEG multilayer sphere

     Category: GUI and Related

      bem_param_select.fig           GUI figure for headmodeler_gui.m
      bst_color_scheme.m             * - apply the BrainStorm color, font, size scheme to the figure
      bst_layout.m                   * - Manage all BST windows in a standard layout
      bst_message_window.fig         GUI figure for bst_message_window.m, avw2brainstorm.m, bem_gain.m, and others
      bst_message_window.m           * - Application M-file for bst_message_window.fig, with NON CALLBACKS
      bst_splashscreen.fig           GUI figure for bst_splashscreen.m, bst_static_taskbar.m
      bst_splashscreen.m             * - GUI app for license information and agreement
      bst_static_taskbar.fig         GUI figure for bst_static_taskbar.m, bst_wavedata_display.m, data_manager.m, and others
      bst_static_taskbar.m           * - BrainStorm's primary taskbar always visible
      bst_win_manager.m              * - GUI Window management for BrainStorm
      channel_select.fig             GUI figure for dataplot_cb.m
      data_manager.fig               GUI figure for data_manager.m, bst_static_taskbar.m, extract_channels.m, and others
      data_manager.m                 * - Edit/select database, subjects, studies, datasets, build headmodels, import data.
      data_selector_cb.m             * - Callback function to setup and execute inverse techniques
      database_manager.fig           GUI figure for database_manager.m, data_manager.m
      database_manager.m             * - GUI to edit the User Databases and select one
      dataplot.fig                   GUI figure for bst_imaging_display.m, bst_static_taskbar.m, bst_wavedata_display.m, and others
      dataplot_cb.m                  * - : Callback switchyard for the DATAViewer Tool
      file_selection_win.fig         GUI figure for file_selection_win.m, bst_mriviewer.m, dataplot_cb.m, and others
      file_selection_win.m           * - Application M-file for file_selection_win.fig
      generic_listbox_win.fig        GUI figure for importdata.m, subject_editor.m
      headmodeler_gui.fig            GUI figure for headmodeler_gui.m, bst_static_taskbar.m, data_manager.m, and others
      headmodeler_gui.m              * - Application M-file to build head models
      importdata.fig                 GUI figure for importdata.m, data_manager.m, ds2brainstorm.m, and others
      importdata.m                   * - Case Switchyard for importing data from major MEG and EEG systems
      layout_manager.fig             GUI figure for layout_manager.m, bst_static_taskbar.m
      layout_manager.m               * - Application M-file to manage the window layout
      least_squares_parameters.fig   GUI figure for data_selector_cb.m, least_squares_parameters_cb.m, parametric_estimation.m
      listbox_win.fig                GUI figure for importdata.m, subject_editor.m
      listchan.fig                   GUI figure for dataplot_cb.m
      logobrainstorm.jpg             Figure file
      makeuswait.m                   * - change the figure pointer according to action
      map_single.fig                 GUI figure for dataplot_cb.m
      mri_parameters.fig             GUI figure for mri_parameters.m, bst_mriviewer.m
      mri_parameters.m               * - Application M-file for mri_parameters.fig
      nowzooming.m                   * - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
      pcs_params.fig                 GUI figure for pcs_params.m, bst_mriviewer.m, mri_read_tool.m
      pcs_params.m                   * - Application M-file to set the parameters of the patient coordinates
      set_dataviewing_parameters.fig GUI figure for dataplot_cb.m
      simulator.fig                  GUI figure for simulator.m, bst_static_taskbar.m, make_default_study.m, and others
      simulator.m                    * - Application M-file for simulator.fig
      simulator_mri.fig              GUI figure for simulator_mri.m, bst_static_taskbar.m, make_default_subject.m
      simulator_mri.m                * - Application M-file to make a simulated spherical MRI
      study_editor.fig               GUI figure for study_editor.m, data_manager.m, importdata.m
      study_editor.m                 * - GUI to edit the BrainStorm Study information, case switchyard
      subject_editor.fig             GUI figure for subject_editor.m, bst_static_taskbar.m, data_manager.m, and others
      subject_editor.m               * - GUI to edit the BrainStorm Subject information, case switchyard
      tess_align_tool.fig            GUI figure for tess_align_tool.m, subject_editor.m
      tess_align_tool.m              * - Application M-file for tess_align_tool.fig
      tessellation_window.fig        GUI figure for bst_imaging_display.m, dataplot_cb.m, manage_corticalscouts.m, and others
      zscore_gui.fig                 GUI figure for zscore_gui.m, dataplot_cb.m
      zscore_gui.m                   * - : management of zscore visualization

     Category: Help

      contents.m                               This Contents File
      help_data_bststudy.m                     * - Information on database files of type 'bststudy'
      help_data_bstsubject.m                   * - Information on database files of type 'bstsubject'
      help_data_channel.m                      * - Information on database files of type 'channel'
      help_data_data.m                         * - Information on database files of type 'data'
      help_data_headmodel.m                    * - Information on database files of type 'headmodel'
      help_data_image.m                        * - Information on database files of type 'image'
      help_data_raw.m                          * - Information on database files of type 'raw'
      help_data_results.m                      * - Information on database files of type 'results'
      help_data_tess.m                         * - Information on database files of type 'tess'
      help_data_triconn.m                      * - Information on database files of type 'triconn'
      help_data_vertconn.m                     * - Information on database files of type 'vertconn'
      help_database_list.m                     * - Explain the database used by BrainStorm
      help_editing_brainstorm.m                * - Information on how to update and edit your version of BrainStorm
      help_fig_bem_param_select.m              * - Information on figure file 'bem_param_select'
      help_fig_bst_message_window.m            * - Information on figure file 'bst_message_window'
      help_fig_bst_splashscreen.m              * - Information on figure file 'bst_splashscreen'
      help_fig_bst_static_taskbar.m            * - Information on figure file 'bst_static_taskbar'
      help_fig_channel_select.m                * - Information on figure file 'channel_select'
      help_fig_chi_pdf_fit.m                   * - Information on figure file 'chi_pdf_fit'
      help_fig_covariance_generator.m          * - Information on figure file 'covariance_generator'
      help_fig_covariance_plots.m              * - Information on figure file 'covariance_plots'
      help_fig_data_manager.m                  * - Information on figure file 'data_manager'
      help_fig_data_selector.m                 * - Information on figure file 'data_selector'
      help_fig_database_manager.m              * - Information on figure file 'database_manager'
      help_fig_dataplot.m                      * - Information on figure file 'dataplot'
      help_fig_generic_listbox_win.m           * - Information on figure file 'generic_listbox_win'
      help_fig_headmodeler_gui.m               * - Information on figure file 'headmodeler_gui'
      help_fig_help_manager.m                  * - Information on figure file 'help_manager'
      help_fig_importdata.m                    * - Information on figure file 'importdata'
      help_fig_layout_manager.m                * - Information on figure file 'layout_manager'
      help_fig_least_squares_parameters.m      * - Information on figure file 'least_squares_parameters'
      help_fig_listbox_win.m                   * - Information on figure file 'listbox_win'
      help_fig_listchan.m                      * - Information on figure file 'listchan'
      help_fig_manage_corticalscouts.m         * - Information on figure file 'manage_corticalscouts'
      help_fig_map_single.m                    * - Information on figure file 'map_single'
      help_fig_mapping.m                       * - Information on figure file 'mapping'
      help_fig_markers_select.m                * - Information on figure file 'markers_select'
      help_fig_minnorm_parameters.m            * - Information on figure file 'minnorm_parameters'
      help_fig_mri_read_tool.m                 * - Information on figure file 'mri_read_tool'
      help_fig_mri_scan_params.m               * - Information on figure file 'mri_scan_params'
      help_fig_mribox.m                        * - Information on figure file 'mribox'
      help_fig_parametric_estimation.m         * - Information on figure file 'parametric_estimation'
      help_fig_pcs_params.m                    * - Information on figure file 'pcs_params'
      help_fig_rap_music_parameters.m          * - Information on figure file 'rap_music_parameters'
      help_fig_rap_parameters.m                * - Information on figure file 'rap_parameters'
      help_fig_results_time_series.m           * - Information on figure file 'results_time_series'
      help_fig_results_update_gui.m            * - Information on figure file 'results_update_gui'
      help_fig_results_visualization.m         * - Information on figure file 'results_visualization'
      help_fig_select_folder.m                 * - Information on figure file 'select_folder'
      help_fig_set_dataviewing_parameters.m    * - Information on figure file 'set_dataviewing_parameters'
      help_fig_set_sourceviewing_parameters.m  * - Information on figure file 'set_sourceviewing_parameters'
      help_fig_show_signal_decomposition.m     * - Information on figure file 'show_signal_decomposition'
      help_fig_simulator.m                     * - Information on figure file 'simulator'
      help_fig_simulator_mri.m                 * - Information on figure file 'simulator_mri'
      help_fig_sourceimaging.m                 * - Information on figure file 'sourceimaging'
      help_fig_sourceimaging_parameters.m      * - Information on figure file 'sourceimaging_parameters'
      help_fig_study_editor.m                  * - Information on figure file 'study_editor'
      help_fig_subject_editor.m                * - Information on figure file 'subject_editor'
      help_fig_taskbar.m                       * - Information on figure file 'taskbar'
      help_fig_tessellation_handler.m          * - Information on figure file 'tessellation_handler'
      help_fig_tessellation_select.m           * - Information on figure file 'tessellation_select'
      help_fig_tessellation_window.m           * - Information on figure file 'tessellation_window'
      help_fig_timeseries.m                    * - Information on figure file 'timeseries'
      help_fig_view_manager.m                  * - Information on figure file 'view_manager'
      help_fig_visu_maps.m                     * - Information on figure file 'visu_maps'
      help_fig_wave_single.m                   * - Information on figure file 'wave_single'
      help_fig_web_pages.m                     * - Information on figure file 'web_pages'
      help_fig_zscore_gui.m                    * - Information on figure file 'zscore_gui'
      help_figure_list.m                       * - Explain the figures used by BrainStorm
      help_pref_currentdata.m                  * - Preference information on structure of 'CurrentData'
      help_pref_dateofagreement.m              * - Preference information on structure of 'DateofAgreement'
      help_pref_defaultsubject.m               * - Preference information on structure of 'DefaultSubject'
      help_pref_iuserdatabase.m                * - Preference information on structure of 'iUserDataBase'
      help_pref_layout.m                       * - Preference information on structure of 'Layout'
      help_pref_studies.m                      * - Preference information on structure of 'Studies'
      help_pref_studysubject.m                 * - Preference information on structure of 'StudySubject'
      help_pref_subjects.m                     * - Preference information on structure of 'Subjects'
      help_pref_usercurrentdata.m              * - Preference information on structure of 'UserCurrentData'
      help_pref_userdatabase.m                 * - Preference information on structure of 'UserDataBase'
      help_pref_version.m                      * - Preference information on structure of 'Version'
      help_preference_list.m                   * - Explain the preferences used by BrainStorm
      montreal_data_create.m                   * - Read landmarks from the Montreal Phantom and create simulated data
      multidipole_simulation_eeg_data_create.m  MONTREAL_DATA_CREATE - Create simulated EEG data using EGI array
      readme.m                                 * - What's New in Each Revision of BrainStorm 2.0 (Alpha)

     Category: Inverse Modeling

      bst_sourceimaging.m              * - Command line call to source imaging routines
      bstscript_ForwardInverse_basic.m * - Basic Head Modelling and Source Imaging BrainStorm Script
      data_selector.fig                GUI figure for bst_sourceimaging.m, data_selector_cb.m, parametric_estimation.m
      lcmvbf.fig                       GUI figure for lcmvbf.m, bst_sourceimaging.m, dataplot_cb.m
      lcmvbf.m                         * - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
      least_squares_fit.m              * - multiple dipole fit using fminsearch
      least_squares_parameters_cb.m    * - least_squares GUI setup and execution
      minnorm.m                        * - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
      minnorm_parameters_cb.m          * - Minimum Norm GUI setup and execution
      muopt.m                          * - Quasi-optimality criterion for choosing the regularization parameter.
      parametric_estimation.fig        GUI figure for parametric_estimation.m, bst_static_taskbar.m, dataplot_cb.m, and others
      parametric_estimation.m          * - GUI for selecting data segments and subspaces prior to estimation
      rap_music_parameters.fig         GUI figure for rap_music_parameters.m, bst_static_taskbar.m, dataplot_cb.m, and others
      rap_music_parameters.m           * - Application M-file for rap_music_parameters.fig
      rapmusic_gui.m                   * - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
      regcheck.m                       * - Check the regularization tag
      regsubspace.m                    * - Determine the subspace based on the regularization method
      subcorr_gui.m                    * - Subcorr function custom to the gui features

     Category: Utility - General

      avw2brainstorm.m            * - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
      brainstorm.m                * - Go to the BrainStorm home web page
      brainstorm_reset.m          * - Clear Matlab BrainStorm preferences, remove default data
      dip.m                       * - UNKNOWN, move to archive?
      engstr.m                    * - create a string for the number in engineering format
      find_brainstorm_files.m     * - Find BrainStorm subjects or study files, create Menu
      find_brainstorm_structure.m * - Find all of the available files with a subject or study
      find_subdir.m               * - Find all subdirectories in a BrainStorm path
      genpath2cell.m              * - convert path or generated path string into cell array
      get_channel.m               * - Get the Channel information associated with a particular data file
      get_user_directory.m        * - Get the user's root directory information
      ginput2.m                   * - Graphical input from mouse.
      grayish.m                   * - % gray out the lower end of a spectrum for less severe palette
      load_raw.m                  * - Read a BrainStorm "raw" format (.txt or .raw) matrix
      make_contents.mat           Mat-file
      mby3check.m                 * - Check to see if matrix is m by 3 or 3 by m.
      mby6check.m                 * - Check to see if matrix is m by 6 or 6 by m.
      meg4read.m                  * - READ CTF MEG4 file format
      mutincomp.m                 * - Mutual incompatibility among checkboxes and radiobuttons
      norcol.m                    * - (French) squared sum of each column in a matrix
      norlig.m                    * - (French) Norm of the rows of a matrix
      offset.m                    * - each column in inmat such that a plot(outmat) looks good.
      qslim.m                     * - Mesh simplification, wrapper function for Garland's QSLIM executable program
      read_ctf_mri.m              * - Read CTF MRI format (Version 2.1)
      readdfs.m                   * - (overwrite succinct one line summary here)
      readRaw.m                   * - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
      save_fieldnames.m           * - Save just the fieldnames of a structure to a mat-file
      save_raw.m                  * - Save out a matrix in BrainStorm "raw" format, based on extension
      select_folder.fig           GUI figure for select_folder.m, database_manager.m
      select_folder.m             * - Application M-file for bst_SelectFolder.fig
      str2mat0.m                  * - (Deprecated) Form text matrix from individual strings.
      str_repeater.m              * - Repeat string format and separator to display data
      vec.m                       * - Lexicographical ordering of a matrix, A(:).
      web_pages.fig               GUI figure for web_pages.m, bst_static_taskbar.m
      web_pages.m                 * - Listbox of relevant BrainStorm web pages and email addresses
      windclf.m                   * - Reset and clear the figure, retaining the NAME property
      windfind.m                  * - Find or create a particular window using it's NAME property

     Category: Utility - Numeric

      aic_mdl.m                * - Calculate Information Theoretic Criteria for data dimensionality
      blk_diag.m               * - Make or extract a sparse block diagonal matrix
      blk_lex.m                * - Lexicographically order the submatrices in A
      brainstorm_filt.m        * - Zero-phase filter dedicated to multi-channel MEG and EEG data
      carto_sph.m              * - (sensloc,v,center)
      chi_pdf_fit.fig          GUI figure with unknown calls
      closest.m                * - Find point in one array closest to point in another array
      colnorm.m                * - Calculate L2 norm for each column of a matrix and normalize
      covariance_generator.fig GUI figure with unknown calls
      cross_mat.m              * - Sparse cross product matrix good for matrix equivalent operation
      crossprod.m              * - Cross product between two sets, each set with three columns
      dist_sph.m               * - FMINS distance function used to minimize the fit to a sphere
      dlegpoly.m               * - Evaluate the first N Legendre polynomials
      dotprod.m                * - Dot product of two vectors (deprecated)
      embedding.m              * - computing the approximate embedding surface
      fidufit.m                * - (overwrite succinct one line summary here)
      findclosest.m            * - Find entries of closest elements between two vectors
      fronorm.m                * - Fast calculation of the Frobenius Norm of a Matrix
      hanning_window.m         * - Calculate the hanning window function for n points
      inorcol.m                * - Compute the (pseudo)inverse of the column norms of matrix Mat
      modulo.m                 * - Compute the modulo
      mri2scs.m                * - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
      ray_intersect.m          * - find intersection of a ray with a set of faces
      rownorm.m                * - Calculate the L2 norm of each row of a matrix
      scs2mri.m                * - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
      shepards.m               * - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
      sort_key.m               * - Sort with column keys
      svd0.m                   * - Economy SVD in both U and V, S returned sparse diagonal
      tessellation_stats.m     * - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
      transform.m              * - Transform coordinates between PCS and MRI
      tri_area.m               * - Find areas of all triangles

     Category: Visualization

      bst_imaging_display.m            * - : display utility for cortical distributed source imaging
      bst_mriviewer.fig                GUI figure for bst_mriviewer.m, bst_static_taskbar.m, dataplot_cb.m, and others
      bst_mriviewer.m                  * - Application M-file for bst_mriviewer.fig
      bst_wavedata_display.m           * - Various ways of loooking at time series
      c_activ.m                        * - Finding a colormap to code deepness and activation
      catci.m                          * - computing color coding for activation on the vertices
      contraste.m                      * - computing the colormap coding deepness
      curvature_cortex.m               * - calculates cortex curvature
      depthgauge.m                     * - Make a depthgauge for measuring depth
      faces_connectivity.m             * - Generate the connections of faces to a vertex
      filterGUI.fig                    GUI figure for filterGUI.m, dataplot_cb.m
      filterGUI.m                      * - M-file for filterGUI.fig
      ihot.mat                         Mat-file
      interp_mail.m                    * - (French) Interpolate coordinates of the "maillage"
      leaflet.m                        * - (overwrite succinct one line summary here)
      leaflet.mat                      Mat-file
      load_BsTMRI.m                    * - Load BrainStorm MRI format
      manage_corticalscouts.fig        GUI figure for manage_corticalscouts.m, dataplot_cb.m
      manage_corticalscouts.m          * - Application M-file for manage_corticalscouts.fig
      mapping.fig                      GUI figure for bst_imaging_display.m, bst_mriviewer.m, bst_wavedata_display.m, and others
      markers_select.fig               GUI figure with unknown calls
      mri_read_tool.fig                GUI figure for mri_read_tool.m, bst_static_taskbar.m, make_default_subject.m, and others
      mri_read_tool.m                  * - AOS Version Application M-file to read in MRI and manipulate
      mribox.fig                       GUI figure for mritool_cb.m
      mritool_cb.m                     * - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
      patch_swell.m                    * - enlarge a patch by appending the next set of adjacent vertices
      plot3d.m                         * - 'plot3' the given three column data
      plot_dipole.m                    * - (r,n,s,c)
      plot_patch.m                     * - plots a vertex or face and its neighbors
      results_time_series.fig          GUI figure for results_time_series.m, rapmusic_gui.m
      results_time_series.m            * - Application M-file for results_time_series.fig
      results_update.m                 * - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
      results_update_gui.fig           GUI figure for results_update.m
      results_visualization.fig        GUI figure for results_visualization.m, bst_static_taskbar.m, rapmusic_gui.m, and others
      results_visualization.m          * - Application M-file View the results of source modeling
      separation.m                     * - Splitting the brain into 2 parts
      set_sourceviewing_parameters.fig GUI figure for set_sourceviewing_parameters.m, dataplot_cb.m
      set_sourceviewing_parameters.m   * - Application M-file for set_sourceviewing_parameters.fig
      show_signal_decomposition.fig    GUI figure for show_signal_decomposition.m
      show_signal_decomposition.m      * - Application M-file for show_signal_decomposition.fig
      smooth_cortex.m                  * - Smoothes tesselation
      sourceimaging.fig                GUI figure for sourceimaging.m, bst_sourceimaging.m, bst_static_taskbar.m, and others
      sourceimaging.m                  * - Main switch to source imaging routines
      sourceimaging_parameters.fig     GUI figure with unknown calls
      tessellation_handler.fig         GUI figure for tessellation_handler.m, set_sourceviewing_parameters.m
      tessellation_handler.m           * - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
      tessellation_outwards.m          * - Ensure that tessellation ordering is "outwards"
      togglebuttoncolor.m              * - : change button color of toggle button
      toggleface.m                     * - Toggle the faces and edges as invisible
      togglelight.m                    * - toggle the lighting flat or phong
      vertices_connectivity.m          * - Generate the connections between vertices
      view_surface.m                   * - Convenient function to consistently plot surfaces
      visu_maps.fig                    GUI figure with unknown calls
      warp_everything_bst.m             WARP_EVERYTHING - (summary line here)
      wave_single.fig                  GUI figure with unknown calls

     Category: All Alphabetical

      aic_mdl.m                                * - Calculate Information Theoretic Criteria for data dimensionality
      avw2brainstorm.m                         * - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
      bem_gain.m                               * - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
      bem_kernel.m                             * - computes kernel matrices for EEG and MEG
      bem_param_select.fig                     GUI figure for headmodeler_gui.m
      bem_xfer.m                               * - Computation of the MEG and/or EEG BEM transfer matrices
      berg.m                                   * - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
      bestfitsph.m                             * - Find best fitting sphere
      blk_diag.m                               * - Make or extract a sparse block diagonal matrix
      blk_lex.m                                * - Lexicographically order the submatrices in A
      brainstorm.m                             * - Go to the BrainStorm home web page
      brainstorm_filt.m                        * - Zero-phase filter dedicated to multi-channel MEG and EEG data
      brainstorm_reset.m                       * - Clear Matlab BrainStorm preferences, remove default data
      browse_study_folder.m                    * - Find all *brainstormstudy.mat files in a directory tree
      bst_cactivcmap.mat                       Mat-file
      bst_color_scheme.m                       * - apply the BrainStorm color, font, size scheme to the figure
      bst_extractmarkersctf.m                  * - Extract signal block from a .ds CTF data set
      bst_headmodeler.m                        * - Solution to the MEG/EEG forward problem
      bst_imaging_display.m                    * - : display utility for cortical distributed source imaging
      bst_layout.m                             * - Manage all BST windows in a standard layout
      bst_message_window.fig                   GUI figure for bst_message_window.m, avw2brainstorm.m, bem_gain.m, and others
      bst_message_window.m                     * - Application M-file for bst_message_window.fig, with NON CALLBACKS
      bst_mriviewer.fig                        GUI figure for bst_mriviewer.m, bst_static_taskbar.m, dataplot_cb.m, and others
      bst_mriviewer.m                          * - Application M-file for bst_mriviewer.fig
      bst_readmarkerfilectf.m                  * - read_markerf reads the CTF markerfile MarkerFile.mrk
      bst_sourceimaging.m                      * - Command line call to source imaging routines
      bst_splashscreen.fig                     GUI figure for bst_splashscreen.m, bst_static_taskbar.m
      bst_splashscreen.m                       * - GUI app for license information and agreement
      bst_static_taskbar.fig                   GUI figure for bst_static_taskbar.m, bst_wavedata_display.m, data_manager.m, and others
      bst_static_taskbar.m                     * - BrainStorm's primary taskbar always visible
      bst_wavedata_display.m                   * - Various ways of loooking at time series
      bst_win_manager.m                        * - GUI Window management for BrainStorm
      bstscript_ForwardInverse_basic.m         * - Basic Head Modelling and Source Imaging BrainStorm Script
      c_activ.m                                * - Finding a colormap to code deepness and activation
      carto_sensors.m                          * - (Rcoils,v);
      carto_sph.m                              * - (sensloc,v,center)
      catci.m                                  * - computing color coding for activation on the vertices
      channel_select.fig                       GUI figure for dataplot_cb.m
      chi_pdf_fit.fig                          GUI figure with unknown calls
      closest.m                                * - Find point in one array closest to point in another array
      colnorm.m                                * - Calculate L2 norm for each column of a matrix and normalize
      contents.m                               This Contents File
      contraste.m                              * - computing the colormap coding deepness
      covariance_generator.fig                 GUI figure with unknown calls
      covariance_plots.fig                     GUI figure for covariance_plots.m
      covariance_plots.m                       * - M-file for covariance_generator, covariance_plots
      cpot.m                                   * - UNKNOWN, Send to Archive?
      cross_mat.m                              * - Sparse cross product matrix good for matrix equivalent operation
      crossprod.m                              * - Cross product between two sets, each set with three columns
      curvature_cortex.m                       * - calculates cortex curvature
      data_manager.fig                         GUI figure for data_manager.m, bst_static_taskbar.m, extract_channels.m, and others
      data_manager.m                           * - Edit/select database, subjects, studies, datasets, build headmodels, import data.
      data_selector.fig                        GUI figure for bst_sourceimaging.m, data_selector_cb.m, parametric_estimation.m
      data_selector_cb.m                       * - Callback function to setup and execute inverse techniques
      database_manager.fig                     GUI figure for database_manager.m, data_manager.m
      database_manager.m                       * - GUI to edit the User Databases and select one
      dataplot.fig                             GUI figure for bst_imaging_display.m, bst_static_taskbar.m, bst_wavedata_display.m, and others
      dataplot_cb.m                            * - : Callback switchyard for the DATAViewer Tool
      depthgauge.m                             * - Make a depthgauge for measuring depth
      dip.m                                    * - UNKNOWN, move to archive?
      dist_sph.m                               * - FMINS distance function used to minimize the fit to a sphere
      dlegpoly.m                               * - Evaluate the first N Legendre polynomials
      dotprod.m                                * - Dot product of two vectors (deprecated)
      ds2brainstorm.m                          * - Convert a DS CTF dataset into BrainStorm format
      eeg2bs.m                                 * - (fnamein,fnameout,type,channel)
      eeg_bem.m                                * - Calculate the electric potential , BEM approach, arbitrary orientation
      eeg_load_scan3avg.m                      * - Read a NeuroScan 3.x AVG File
      eeg_sph.m                                * - Calculate the electric potential , spherical head, arbitrary orientation
      elpos2bs.m                               * - this function converts electrode position files into BrainStorm Channel format
      embedding.m                              * - computing the approximate embedding surface
      engstr.m                                 * - create a string for the number in engineering format
      extract_channels.m                       * - Extract the channels to be used in this particular run
      extract_ctf_markers.m                    * - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
      faces_connectivity.m                     * - Generate the connections of faces to a vertex
      fidufit.m                                * - (overwrite succinct one line summary here)
      fidufit.mat                              Mat-file
      file_selection_win.fig                   GUI figure for file_selection_win.m, bst_mriviewer.m, dataplot_cb.m, and others
      file_selection_win.m                     * - Application M-file for file_selection_win.fig
      filterGUI.fig                            GUI figure for filterGUI.m, dataplot_cb.m
      filterGUI.m                              * - M-file for filterGUI.fig
      find_brainstorm_files.m                  * - Find BrainStorm subjects or study files, create Menu
      find_brainstorm_structure.m              * - Find all of the available files with a subject or study
      find_mfiles.m                            * - Find m-files that open a particular figure handle or the GCF
      find_subdir.m                            * - Find all subdirectories in a BrainStorm path
      findclosest.m                            * - Find entries of closest elements between two vectors
      fronorm.m                                * - Fast calculation of the Frobenius Norm of a Matrix
      gain_interp.m                            * - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
      generic_listbox_win.fig                  GUI figure for importdata.m, subject_editor.m
      genpath2cell.m                           * - convert path or generated path string into cell array
      geom100.mat                              Mat-file
      get_channel.m                            * - Get the Channel information associated with a particular data file
      get_gain.m                               * - Get a set of source foward fields from a .bin gain matrix file
      get_user_directory.m                     * - Get the user's root directory information
      ginput2.m                                * - Graphical input from mouse.
      good_channel.m                           * - Extract channels of a given type
      grayish.m                                * - % gray out the lower end of a spectrum for less severe palette
      gridmaker.m                              * - 3D regular gridding of surface envelope
      hanning_window.m                         * - Calculate the hanning window function for n points
      headmodeler_gui.fig                      GUI figure for headmodeler_gui.m, bst_static_taskbar.m, data_manager.m, and others
      headmodeler_gui.m                        * - Application M-file to build head models
      help_data_bststudy.m                     * - Information on database files of type 'bststudy'
      help_data_bstsubject.m                   * - Information on database files of type 'bstsubject'
      help_data_channel.m                      * - Information on database files of type 'channel'
      help_data_data.m                         * - Information on database files of type 'data'
      help_data_headmodel.m                    * - Information on database files of type 'headmodel'
      help_data_image.m                        * - Information on database files of type 'image'
      help_data_raw.m                          * - Information on database files of type 'raw'
      help_data_results.m                      * - Information on database files of type 'results'
      help_data_tess.m                         * - Information on database files of type 'tess'
      help_data_triconn.m                      * - Information on database files of type 'triconn'
      help_data_vertconn.m                     * - Information on database files of type 'vertconn'
      help_database_list.m                     * - Explain the database used by BrainStorm
      help_editing_brainstorm.m                * - Information on how to update and edit your version of BrainStorm
      help_fig_bem_param_select.m              * - Information on figure file 'bem_param_select'
      help_fig_bst_message_window.m            * - Information on figure file 'bst_message_window'
      help_fig_bst_splashscreen.m              * - Information on figure file 'bst_splashscreen'
      help_fig_bst_static_taskbar.m            * - Information on figure file 'bst_static_taskbar'
      help_fig_channel_select.m                * - Information on figure file 'channel_select'
      help_fig_chi_pdf_fit.m                   * - Information on figure file 'chi_pdf_fit'
      help_fig_covariance_generator.m          * - Information on figure file 'covariance_generator'
      help_fig_covariance_plots.m              * - Information on figure file 'covariance_plots'
      help_fig_data_manager.m                  * - Information on figure file 'data_manager'
      help_fig_data_selector.m                 * - Information on figure file 'data_selector'
      help_fig_database_manager.m              * - Information on figure file 'database_manager'
      help_fig_dataplot.m                      * - Information on figure file 'dataplot'
      help_fig_generic_listbox_win.m           * - Information on figure file 'generic_listbox_win'
      help_fig_headmodeler_gui.m               * - Information on figure file 'headmodeler_gui'
      help_fig_help_manager.m                  * - Information on figure file 'help_manager'
      help_fig_importdata.m                    * - Information on figure file 'importdata'
      help_fig_layout_manager.m                * - Information on figure file 'layout_manager'
      help_fig_least_squares_parameters.m      * - Information on figure file 'least_squares_parameters'
      help_fig_listbox_win.m                   * - Information on figure file 'listbox_win'
      help_fig_listchan.m                      * - Information on figure file 'listchan'
      help_fig_manage_corticalscouts.m         * - Information on figure file 'manage_corticalscouts'
      help_fig_map_single.m                    * - Information on figure file 'map_single'
      help_fig_mapping.m                       * - Information on figure file 'mapping'
      help_fig_markers_select.m                * - Information on figure file 'markers_select'
      help_fig_minnorm_parameters.m            * - Information on figure file 'minnorm_parameters'
      help_fig_mri_read_tool.m                 * - Information on figure file 'mri_read_tool'
      help_fig_mri_scan_params.m               * - Information on figure file 'mri_scan_params'
      help_fig_mribox.m                        * - Information on figure file 'mribox'
      help_fig_parametric_estimation.m         * - Information on figure file 'parametric_estimation'
      help_fig_pcs_params.m                    * - Information on figure file 'pcs_params'
      help_fig_rap_music_parameters.m          * - Information on figure file 'rap_music_parameters'
      help_fig_rap_parameters.m                * - Information on figure file 'rap_parameters'
      help_fig_results_time_series.m           * - Information on figure file 'results_time_series'
      help_fig_results_update_gui.m            * - Information on figure file 'results_update_gui'
      help_fig_results_visualization.m         * - Information on figure file 'results_visualization'
      help_fig_select_folder.m                 * - Information on figure file 'select_folder'
      help_fig_set_dataviewing_parameters.m    * - Information on figure file 'set_dataviewing_parameters'
      help_fig_set_sourceviewing_parameters.m  * - Information on figure file 'set_sourceviewing_parameters'
      help_fig_show_signal_decomposition.m     * - Information on figure file 'show_signal_decomposition'
      help_fig_simulator.m                     * - Information on figure file 'simulator'
      help_fig_simulator_mri.m                 * - Information on figure file 'simulator_mri'
      help_fig_sourceimaging.m                 * - Information on figure file 'sourceimaging'
      help_fig_sourceimaging_parameters.m      * - Information on figure file 'sourceimaging_parameters'
      help_fig_study_editor.m                  * - Information on figure file 'study_editor'
      help_fig_subject_editor.m                * - Information on figure file 'subject_editor'
      help_fig_taskbar.m                       * - Information on figure file 'taskbar'
      help_fig_tessellation_handler.m          * - Information on figure file 'tessellation_handler'
      help_fig_tessellation_select.m           * - Information on figure file 'tessellation_select'
      help_fig_tessellation_window.m           * - Information on figure file 'tessellation_window'
      help_fig_timeseries.m                    * - Information on figure file 'timeseries'
      help_fig_view_manager.m                  * - Information on figure file 'view_manager'
      help_fig_visu_maps.m                     * - Information on figure file 'visu_maps'
      help_fig_wave_single.m                   * - Information on figure file 'wave_single'
      help_fig_web_pages.m                     * - Information on figure file 'web_pages'
      help_fig_zscore_gui.m                    * - Information on figure file 'zscore_gui'
      help_figure_list.m                       * - Explain the figures used by BrainStorm
      help_manager.fig                         GUI figure for help_manager.m, bst_static_taskbar.m
      help_manager.m                           * - Application M-file for help_manager.fig
      help_pref_currentdata.m                  * - Preference information on structure of 'CurrentData'
      help_pref_dateofagreement.m              * - Preference information on structure of 'DateofAgreement'
      help_pref_defaultsubject.m               * - Preference information on structure of 'DefaultSubject'
      help_pref_iuserdatabase.m                * - Preference information on structure of 'iUserDataBase'
      help_pref_layout.m                       * - Preference information on structure of 'Layout'
      help_pref_studies.m                      * - Preference information on structure of 'Studies'
      help_pref_studysubject.m                 * - Preference information on structure of 'StudySubject'
      help_pref_subjects.m                     * - Preference information on structure of 'Subjects'
      help_pref_usercurrentdata.m              * - Preference information on structure of 'UserCurrentData'
      help_pref_userdatabase.m                 * - Preference information on structure of 'UserDataBase'
      help_pref_version.m                      * - Preference information on structure of 'Version'
      help_preference_list.m                   * - Explain the preferences used by BrainStorm
      hrow_linear.m                            * - Compute row in BEM geometry matrix for linear collocation
      ihot.mat                                 Mat-file
      importdata.fig                           GUI figure for importdata.m, data_manager.m, ds2brainstorm.m, and others
      importdata.m                             * - Case Switchyard for importing data from major MEG and EEG systems
      inorcol.m                                * - Compute the (pseudo)inverse of the column norms of matrix Mat
      interp_mail.m                            * - (French) Interpolate coordinates of the "maillage"
      kl_galerkin.m                            * - Galerking kernel for BEM of linear model
      kl_gram.m                                * - Kernel computation used in bem_xfer
      layout_manager.fig                       GUI figure for layout_manager.m, bst_static_taskbar.m
      layout_manager.m                         * - Application M-file to manage the window layout
      lcmvbf.fig                               GUI figure for lcmvbf.m, bst_sourceimaging.m, dataplot_cb.m
      lcmvbf.m                                 * - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
      leaflet.m                                * - (overwrite succinct one line summary here)
      leaflet.mat                              Mat-file
      least_squares_fit.m                      * - multiple dipole fit using fminsearch
      least_squares_parameters.fig             GUI figure for data_selector_cb.m, least_squares_parameters_cb.m, parametric_estimation.m
      least_squares_parameters_cb.m            * - least_squares GUI setup and execution
      listbox_win.fig                          GUI figure for importdata.m, subject_editor.m
      listchan.fig                             GUI figure for dataplot_cb.m
      load_brainstorm_file.m                   * - load or try to find and load the BrainStorm file.
      load_BsTMRI.m                            * - Load BrainStorm MRI format
      load_fif_apos.m                          * - Load in position information from Neuromag 122 ".apos" file
      load_fif_asc.m                           * - Load data from Neuromag 122 .fif file converted to ascii
      load_raw.m                               * - Read a BrainStorm "raw" format (.txt or .raw) matrix
      load_smf.m                               * - Load a simply written SMF file into the faces vertices structure
      logobrainstorm.jpg                       Figure file
      make_contents.mat                        Mat-file
      make_default_database.m                  * - Confirm or Create a default database, default study, default subject
      make_default_study.m                     * - Create simulated default data and link to a simulated subject
      make_default_subject.m                   * - Make a brainstormsubject and simulated MRI in a folder
      makeuswait.m                             * - change the figure pointer according to action
      manage_corticalscouts.fig                GUI figure for manage_corticalscouts.m, dataplot_cb.m
      manage_corticalscouts.m                  * - Application M-file for manage_corticalscouts.fig
      map_single.fig                           GUI figure for dataplot_cb.m
      mapping.fig                              GUI figure for bst_imaging_display.m, bst_mriviewer.m, bst_wavedata_display.m, and others
      markers_select.fig                       GUI figure with unknown calls
      mby3check.m                              * - Check to see if matrix is m by 3 or 3 by m.
      mby6check.m                              * - Check to see if matrix is m by 6 or 6 by m.
      meg4read.m                               * - READ CTF MEG4 file format
      meg4write.m                              * - WRITE CTF MEG4 file format
      meg_bem.m                                * - Calculate the mag field, BEM approach, arbitrary orientation
      mes.m                                    * - (overwrite succinct one line summary here)
      mesh2brainstorm.m                        * - Import .mesh tessellation files (BrainVisa interchange)
      minnorm.m                                * - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
      minnorm_parameters_cb.m                  * - Minimum Norm GUI setup and execution
      modulo.m                                 * - Compute the modulo
      montreal_data_create.m                   * - Read landmarks from the Montreal Phantom and create simulated data
      mri2scs.m                                * - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
      mri_parameters.fig                       GUI figure for mri_parameters.m, bst_mriviewer.m
      mri_parameters.m                         * - Application M-file for mri_parameters.fig
      mri_read_tool.fig                        GUI figure for mri_read_tool.m, bst_static_taskbar.m, make_default_subject.m, and others
      mri_read_tool.m                          * - AOS Version Application M-file to read in MRI and manipulate
      mribox.fig                               GUI figure for mritool_cb.m
      mritool_cb.m                             * - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
      multidipole_simulation_eeg_data_create.m  MONTREAL_DATA_CREATE - Create simulated EEG data using EGI array
      muopt.m                                  * - Quasi-optimality criterion for choosing the regularization parameter.
      mutincomp.m                              * - Mutual incompatibility among checkboxes and radiobuttons
      norcol.m                                 * - (French) squared sum of each column in a matrix
      norlig.m                                 * - (French) Norm of the rows of a matrix
      nowzooming.m                             * - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
      offset.m                                 * - each column in inmat such that a plot(outmat) looks good.
      os_meg.m                                 * - Calculate the (overlapping) sphere models for MEG
      overlapping_sphere.m                     * - Create overlapping spheres for E/MEG channels.
      overlapping_sphere_fmins.m               * - for use with OVERLAPPING_SPHERE
      parametric_estimation.fig                GUI figure for parametric_estimation.m, bst_static_taskbar.m, dataplot_cb.m, and others
      parametric_estimation.m                  * - GUI for selecting data segments and subspaces prior to estimation
      patch_swell.m                            * - enlarge a patch by appending the next set of adjacent vertices
      pcs_params.fig                           GUI figure for pcs_params.m, bst_mriviewer.m, mri_read_tool.m
      pcs_params.m                             * - Application M-file to set the parameters of the patient coordinates
      phantom_channel_assignment.fig           GUI figure for phantom_channel_assignment.m, tess_align_tool.m
      phantom_channel_assignment.m             * - Application M-file for phantom_channel_assignment.fig
      pleg.m                                   * - Used in CPOT, Legendre polynomials
      plot3d.m                                 * - 'plot3' the given three column data
      plot_dipole.m                            * - (r,n,s,c)
      plot_patch.m                             * - plots a vertex or face and its neighbors
      prepfig.m                                * - Prepare figure
      qslim.m                                  * - Mesh simplification, wrapper function for Garland's QSLIM executable program
      rap_music_parameters.fig                 GUI figure for rap_music_parameters.m, bst_static_taskbar.m, dataplot_cb.m, and others
      rap_music_parameters.m                   * - Application M-file for rap_music_parameters.fig
      rapmusic_gui.m                           * - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
      ray_intersect.m                          * - find intersection of a ray with a set of faces
      read_besa.m                              * - (overwrite succinct one line summary here)
      read_ctf_mri.m                           * - Read CTF MRI format (Version 2.1)
      read_gain.m                              * - Extract parts or a compete gain matrix from .bin binay gain file
      readdfs.m                                * - (overwrite succinct one line summary here)
      readdsgl.m                               * - Loads a BrainSuite .dsgl format tessellation file.
      readmarkerfile_ctf.m                     * - Read marker information from CTF MarkerFile.mrk
      readme.m                                 * - What's New in Each Revision of BrainStorm 2.0 (Alpha)
      readRaw.m                                * - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
      regcheck.m                               * - Check the regularization tag
      regsubspace.m                            * - Determine the subspace based on the regularization method
      results_time_series.fig                  GUI figure for results_time_series.m, rapmusic_gui.m
      results_time_series.m                    * - Application M-file for results_time_series.fig
      results_update.m                         * - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
      results_update_gui.fig                   GUI figure for results_update.m
      results_visualization.fig                GUI figure for results_visualization.m, bst_static_taskbar.m, rapmusic_gui.m, and others
      results_visualization.m                  * - Application M-file View the results of source modeling
      rownorm.m                                * - Calculate the L2 norm of each row of a matrix
      save_fieldnames.m                        * - Save just the fieldnames of a structure to a mat-file
      save_raw.m                               * - Save out a matrix in BrainStorm "raw" format, based on extension
      save_smf.m                               * - Save out a file in a simple form of the SMF format
      scs2mri.m                                * - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
      select_folder.fig                        GUI figure for select_folder.m, database_manager.m
      select_folder.m                          * - Application M-file for bst_SelectFolder.fig
      sensor_122.m                             * - Return the Neuromag 122 information
      sensor_axial.m                           * - Generate axial gradiometers
      sensor_planar.m                          * - Generate planar gradiometers
      sensor_ring.m                            * - Generate rings of sensors about a sphere roughly uniformly spaced.
      sensor_spacing.m                         * - generate sites roughly evenly spaced about a hemisphere.
      separation.m                             * - Splitting the brain into 2 parts
      set_dataviewing_parameters.fig           GUI figure for dataplot_cb.m
      set_sourceviewing_parameters.fig         GUI figure for set_sourceviewing_parameters.m, dataplot_cb.m
      set_sourceviewing_parameters.m           * - Application M-file for set_sourceviewing_parameters.fig
      shepards.m                               * - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
      show_signal_decomposition.fig            GUI figure for show_signal_decomposition.m
      show_signal_decomposition.m              * - Application M-file for show_signal_decomposition.fig
      simulator.fig                            GUI figure for simulator.m, bst_static_taskbar.m, make_default_study.m, and others
      simulator.m                              * - Application M-file for simulator.fig
      simulator_mri.fig                        GUI figure for simulator_mri.m, bst_static_taskbar.m, make_default_subject.m
      simulator_mri.m                          * - Application M-file to make a simulated spherical MRI
      smooth_cortex.m                          * - Smoothes tesselation
      solid_angle2.m                           * - Solid angle of a viewed triangle
      sort_key.m                               * - Sort with column keys
      source_grid.m                            * - generate variable grid of possible source locations
      source_grids.m                           * - Generate source grids for parametric model searches
      source_tess.m                            * - generate variable grid of possible source locations
      sourceimaging.fig                        GUI figure for sourceimaging.m, bst_sourceimaging.m, bst_static_taskbar.m, and others
      sourceimaging.m                          * - Main switch to source imaging routines
      sourceimaging_parameters.fig             GUI figure with unknown calls
      sph_rphtestgrid2.mat                     Mat-file
      sph_rphtestgrid3.mat                     Mat-file
      str2mat0.m                               * - (Deprecated) Form text matrix from individual strings.
      str_repeater.m                           * - Repeat string format and separator to display data
      study_editor.fig                         GUI figure for study_editor.m, data_manager.m, importdata.m
      study_editor.m                           * - GUI to edit the BrainStorm Study information, case switchyard
      subcorr_gui.m                            * - Subcorr function custom to the gui features
      subject_editor.fig                       GUI figure for subject_editor.m, bst_static_taskbar.m, data_manager.m, and others
      subject_editor.m                         * - GUI to edit the BrainStorm Subject information, case switchyard
      surf2vol_interp.m                        * - (overwrite succinct one line summary here)
      svd0.m                                   * - Economy SVD in both U and V, S returned sparse diagonal
      tess_align_tool.fig                      GUI figure for tess_align_tool.m, subject_editor.m
      tess_align_tool.m                        * - Application M-file for tess_align_tool.fig
      tesselate.m                              * - tesselate based on the sensor_ring program
      tessellation_handler.fig                 GUI figure for tessellation_handler.m, set_sourceviewing_parameters.m
      tessellation_handler.m                   * - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
      tessellation_outwards.m                  * - Ensure that tessellation ordering is "outwards"
      tessellation_stats.m                     * - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
      tessellation_window.fig                  GUI figure for bst_imaging_display.m, dataplot_cb.m, manage_corticalscouts.m, and others
      togglebuttoncolor.m                      * - : change button color of toggle button
      toggleface.m                             * - Toggle the faces and edges as invisible
      togglelight.m                            * - toggle the lighting flat or phong
      toolbox_cross_ref.mat                    Mat-file
      trans_matrix.m                           * - calculate BEM transfer matrices for EEG and MEG
      transform.m                              * - Transform coordinates between PCS and MRI
      tri2brainstorm.m                         * - Read .tri file into BrainStorm format
      tri_area.m                               * - Find areas of all triangles
      tri_interp.m                             * - Compute the interpolation matrix from a cortical tessellation to the MRI volume
      vec.m                                    * - Lexicographical ordering of a matrix, A(:).
      vertices_connectivity.m                  * - Generate the connections between vertices
      view_surface.m                           * - Convenient function to consistently plot surfaces
      visu_maps.fig                            GUI figure with unknown calls
      warp_everything_bst.m                     WARP_EVERYTHING - (summary line here)
      wave_single.fig                          GUI figure with unknown calls
      web_pages.fig                            GUI figure for web_pages.m, bst_static_taskbar.m
      web_pages.m                              * - Listbox of relevant BrainStorm web pages and email addresses
      weighting_scalar.m                       * - For use with Overlapping Sphere
      windclf.m                                * - Reset and clear the figure, retaining the NAME property
      windfind.m                               * - Find or create a particular window using it's NAME property
      zhang_fit.m                              * - Compute 'Berg' parameters for EEG multilayer sphere
      zscore_gui.fig                           GUI figure for zscore_gui.m, dataplot_cb.m
      zscore_gui.m                             * - : management of zscore visualization

     Category: Unknown Category

      bst_cactivcmap.mat    Mat-file
      fidufit.mat           Mat-file
      geom100.mat           Mat-file
      sph_rphtestgrid2.mat  Mat-file
      sph_rphtestgrid3.mat  Mat-file
      toolbox_cross_ref.mat Mat-file

     Category: Missing in Toolbox

      No files in this category

     Category: Archive

      cpot.m            * - UNKNOWN, Send to Archive?
      mes.m             * - (overwrite succinct one line summary here)
      pleg.m            * - Used in CPOT, Legendre polynomials
      prepfig.m         * - Prepare figure
      surf2vol_interp.m * - (overwrite succinct one line summary here)

### Cross-Reference Information

This is called by

    find_mfiles                        C:\BrainStorm_2001\Toolbox\find_mfiles.m

### Listing of C:\BrainStorm_2001\Toolbox\contents.m

    % BrainStorm Toolbox
    % Version 2.0 (Alpha) 02-Nov-2004
    % Contents Generated by make_contents on 02-Nov-2004 14:31:32
    %
    % Files Sorted first by Category, then alphabetical, listed with first help line.
    % A * indicates the H1 line begins with the filename.
    %
    % Category: Data Processing
    %
    %  bst_extractmarkersctf.m * - Extract signal block from a .ds CTF data set
    %  bst_readmarkerfilectf.m * - read_markerf reads the CTF markerfile MarkerFile.mrk
    %  covariance_plots.fig    GUI figure for covariance_plots.m
    %  covariance_plots.m      * - M-file for covariance_generator, covariance_plots
    %  ds2brainstorm.m         * - Convert a DS CTF dataset into BrainStorm format
    %  eeg2bs.m                * - (fnamein,fnameout,type,channel)
    %  extract_channels.m      * - Extract the channels to be used in this particular run
    %  extract_ctf_markers.m   * - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
    %  load_fif_apos.m         * - Load in position information from Neuromag 122 ".apos" file
    %  load_fif_asc.m          * - Load data from Neuromag 122 .fif file converted to ascii
    %  load_smf.m              * - Load a simply written SMF file into the faces vertices structure
    %  meg4write.m             * - WRITE CTF MEG4 file format
    %  mesh2brainstorm.m       * - Import .mesh tessellation files (BrainVisa interchange)
    %  readdsgl.m              * - Loads a BrainSuite .dsgl format tessellation file.
    %  readmarkerfile_ctf.m    * - Read marker information from CTF MarkerFile.mrk
    %  save_smf.m              * - Save out a file in a simple form of the SMF format
    %  tri2brainstorm.m        * - Read .tri file into BrainStorm format
    %
    % Category: Database Management
    %
    %  browse_study_folder.m          * - Find all *brainstormstudy.mat files in a directory tree
    %  eeg_load_scan3avg.m            * - Read a NeuroScan 3.x AVG File
    %  elpos2bs.m                     * - this function converts electrode position files into BrainStorm Channel format
    %  find_mfiles.m                  * - Find m-files that open a particular figure handle or the GCF
    %  help_manager.fig               GUI figure for help_manager.m, bst_static_taskbar.m
    %  help_manager.m                 * - Application M-file for help_manager.fig
    %  load_brainstorm_file.m         * - load or try to find and load the BrainStorm file.
    %  make_default_database.m        * - Confirm or Create a default database, default study, default subject
    %  make_default_study.m           * - Create simulated default data and link to a simulated subject
    %  make_default_subject.m         * - Make a brainstormsubject and simulated MRI in a folder
    %  phantom_channel_assignment.fig GUI figure for phantom_channel_assignment.m, tess_align_tool.m
    %  phantom_channel_assignment.m   * - Application M-file for phantom_channel_assignment.fig
    %  read_besa.m                    * - (overwrite succinct one line summary here)
    %
    % Category: Forward Modeling
    %
    %  bem_gain.m                 * - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
    %  bem_kernel.m               * - computes kernel matrices for EEG and MEG
    %  bem_xfer.m                 * - Computation of the MEG and/or EEG BEM transfer matrices
    %  berg.m                     * - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
    %  bestfitsph.m               * - Find best fitting sphere
    %  bst_headmodeler.m          * - Solution to the MEG/EEG forward problem
    %  carto_sensors.m            * - (Rcoils,v);
    %  eeg_bem.m                  * - Calculate the electric potential , BEM approach, arbitrary orientation
    %  eeg_sph.m                  * - Calculate the electric potential , spherical head, arbitrary orientation
    %  gain_interp.m              * - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
    %  get_gain.m                 * - Get a set of source foward fields from a .bin gain matrix file
    %  good_channel.m             * - Extract channels of a given type
    %  gridmaker.m                * - 3D regular gridding of surface envelope
    %  hrow_linear.m              * - Compute row in BEM geometry matrix for linear collocation
    %  kl_galerkin.m              * - Galerking kernel for BEM of linear model
    %  kl_gram.m                  * - Kernel computation used in bem_xfer
    %  meg_bem.m                  * - Calculate the mag field, BEM approach, arbitrary orientation
    %  os_meg.m                   * - Calculate the (overlapping) sphere models for MEG
    %  overlapping_sphere.m       * - Create overlapping spheres for E/MEG channels.
    %  overlapping_sphere_fmins.m * - for use with OVERLAPPING_SPHERE
    %  read_gain.m                * - Extract parts or a compete gain matrix from .bin binay gain file
    %  sensor_122.m               * - Return the Neuromag 122 information
    %  sensor_axial.m             * - Generate axial gradiometers
    %  sensor_planar.m            * - Generate planar gradiometers
    %  sensor_ring.m              * - Generate rings of sensors about a sphere roughly uniformly spaced.
    %  sensor_spacing.m           * - generate sites roughly evenly spaced about a hemisphere.
    %  solid_angle2.m             * - Solid angle of a viewed triangle
    %  source_grid.m              * - generate variable grid of possible source locations
    %  source_grids.m             * - Generate source grids for parametric model searches
    %  source_tess.m              * - generate variable grid of possible source locations
    %  tesselate.m                * - tesselate based on the sensor_ring program
    %  trans_matrix.m             * - calculate BEM transfer matrices for EEG and MEG
    %  tri_interp.m               * - Compute the interpolation matrix from a cortical tessellation to the MRI volume
    %  weighting_scalar.m         * - For use with Overlapping Sphere
    %  zhang_fit.m                * - Compute 'Berg' parameters for EEG multilayer sphere
    %
    % Category: GUI and Related
    %
    %  bem_param_select.fig           GUI figure for headmodeler_gui.m
    %  bst_color_scheme.m             * - apply the BrainStorm color, font, size scheme to the figure
    %  bst_layout.m                   * - Manage all BST windows in a standard layout
    %  bst_message_window.fig         GUI figure for bst_message_window.m, avw2brainstorm.m, bem_gain.m, and others
    %  bst_message_window.m           * - Application M-file for bst_message_window.fig, with NON CALLBACKS
    %  bst_splashscreen.fig           GUI figure for bst_splashscreen.m, bst_static_taskbar.m
    %  bst_splashscreen.m             * - GUI app for license information and agreement
    %  bst_static_taskbar.fig         GUI figure for bst_static_taskbar.m, bst_wavedata_display.m, data_manager.m, and others
    %  bst_static_taskbar.m           * - BrainStorm's primary taskbar always visible
    %  bst_win_manager.m              * - GUI Window management for BrainStorm
    %  channel_select.fig             GUI figure for dataplot_cb.m
    %  data_manager.fig               GUI figure for data_manager.m, bst_static_taskbar.m, extract_channels.m, and others
    %  data_manager.m                 * - Edit/select database, subjects, studies, datasets, build headmodels, import data.
    %  data_selector_cb.m             * - Callback function to setup and execute inverse techniques
    %  database_manager.fig           GUI figure for database_manager.m, data_manager.m
    %  database_manager.m             * - GUI to edit the User Databases and select one
    %  dataplot.fig                   GUI figure for bst_imaging_display.m, bst_static_taskbar.m, bst_wavedata_display.m, and others
    %  dataplot_cb.m                  * - : Callback switchyard for the DATAViewer Tool
    %  file_selection_win.fig         GUI figure for file_selection_win.m, bst_mriviewer.m, dataplot_cb.m, and others
    %  file_selection_win.m           * - Application M-file for file_selection_win.fig
    %  generic_listbox_win.fig        GUI figure for importdata.m, subject_editor.m
    %  headmodeler_gui.fig            GUI figure for headmodeler_gui.m, bst_static_taskbar.m, data_manager.m, and others
    %  headmodeler_gui.m              * - Application M-file to build head models
    %  importdata.fig                 GUI figure for importdata.m, data_manager.m, ds2brainstorm.m, and others
    %  importdata.m                   * - Case Switchyard for importing data from major MEG and EEG systems
    %  layout_manager.fig             GUI figure for layout_manager.m, bst_static_taskbar.m
    %  layout_manager.m               * - Application M-file to manage the window layout
    %  least_squares_parameters.fig   GUI figure for data_selector_cb.m, least_squares_parameters_cb.m, parametric_estimation.m
    %  listbox_win.fig                GUI figure for importdata.m, subject_editor.m
    %  listchan.fig                   GUI figure for dataplot_cb.m
    %  logobrainstorm.jpg             Figure file
    %  makeuswait.m                   * - change the figure pointer according to action
    %  map_single.fig                 GUI figure for dataplot_cb.m
    %  mri_parameters.fig             GUI figure for mri_parameters.m, bst_mriviewer.m
    %  mri_parameters.m               * - Application M-file for mri_parameters.fig
    %  nowzooming.m                   * - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
    %  pcs_params.fig                 GUI figure for pcs_params.m, bst_mriviewer.m, mri_read_tool.m
    %  pcs_params.m                   * - Application M-file to set the parameters of the patient coordinates
    %  set_dataviewing_parameters.fig GUI figure for dataplot_cb.m
    %  simulator.fig                  GUI figure for simulator.m, bst_static_taskbar.m, make_default_study.m, and others
    %  simulator.m                    * - Application M-file for simulator.fig
    %  simulator_mri.fig              GUI figure for simulator_mri.m, bst_static_taskbar.m, make_default_subject.m
    %  simulator_mri.m                * - Application M-file to make a simulated spherical MRI
    %  study_editor.fig               GUI figure for study_editor.m, data_manager.m, importdata.m
    %  study_editor.m                 * - GUI to edit the BrainStorm Study information, case switchyard
    %  subject_editor.fig             GUI figure for subject_editor.m, bst_static_taskbar.m, data_manager.m, and others
    %  subject_editor.m               * - GUI to edit the BrainStorm Subject information, case switchyard
    %  tess_align_tool.fig            GUI figure for tess_align_tool.m, subject_editor.m
    %  tess_align_tool.m              * - Application M-file for tess_align_tool.fig
    %  tessellation_window.fig        GUI figure for bst_imaging_display.m, dataplot_cb.m, manage_corticalscouts.m, and others
    %  zscore_gui.fig                 GUI figure for zscore_gui.m, dataplot_cb.m
    %  zscore_gui.m                   * - : management of zscore visualization
    %
    % Category: Help
    %
    %  contents.m                               This Contents File
    %  help_data_bststudy.m                     * - Information on database files of type 'bststudy'
    %  help_data_bstsubject.m                   * - Information on database files of type 'bstsubject'
    %  help_data_channel.m                      * - Information on database files of type 'channel'
    %  help_data_data.m                         * - Information on database files of type 'data'
    %  help_data_headmodel.m                    * - Information on database files of type 'headmodel'
    %  help_data_image.m                        * - Information on database files of type 'image'
    %  help_data_raw.m                          * - Information on database files of type 'raw'
    %  help_data_results.m                      * - Information on database files of type 'results'
    %  help_data_tess.m                         * - Information on database files of type 'tess'
    %  help_data_triconn.m                      * - Information on database files of type 'triconn'
    %  help_data_vertconn.m                     * - Information on database files of type 'vertconn'
    %  help_database_list.m                     * - Explain the database used by BrainStorm
    %  help_editing_brainstorm.m                * - Information on how to update and edit your version of BrainStorm
    %  help_fig_bem_param_select.m              * - Information on figure file 'bem_param_select'
    %  help_fig_bst_message_window.m            * - Information on figure file 'bst_message_window'
    %  help_fig_bst_splashscreen.m              * - Information on figure file 'bst_splashscreen'
    %  help_fig_bst_static_taskbar.m            * - Information on figure file 'bst_static_taskbar'
    %  help_fig_channel_select.m                * - Information on figure file 'channel_select'
    %  help_fig_chi_pdf_fit.m                   * - Information on figure file 'chi_pdf_fit'
    %  help_fig_covariance_generator.m          * - Information on figure file 'covariance_generator'
    %  help_fig_covariance_plots.m              * - Information on figure file 'covariance_plots'
    %  help_fig_data_manager.m                  * - Information on figure file 'data_manager'
    %  help_fig_data_selector.m                 * - Information on figure file 'data_selector'
    %  help_fig_database_manager.m              * - Information on figure file 'database_manager'
    %  help_fig_dataplot.m                      * - Information on figure file 'dataplot'
    %  help_fig_generic_listbox_win.m           * - Information on figure file 'generic_listbox_win'
    %  help_fig_headmodeler_gui.m               * - Information on figure file 'headmodeler_gui'
    %  help_fig_help_manager.m                  * - Information on figure file 'help_manager'
    %  help_fig_importdata.m                    * - Information on figure file 'importdata'
    %  help_fig_layout_manager.m                * - Information on figure file 'layout_manager'
    %  help_fig_least_squares_parameters.m      * - Information on figure file 'least_squares_parameters'
    %  help_fig_listbox_win.m                   * - Information on figure file 'listbox_win'
    %  help_fig_listchan.m                      * - Information on figure file 'listchan'
    %  help_fig_manage_corticalscouts.m         * - Information on figure file 'manage_corticalscouts'
    %  help_fig_map_single.m                    * - Information on figure file 'map_single'
    %  help_fig_mapping.m                       * - Information on figure file 'mapping'
    %  help_fig_markers_select.m                * - Information on figure file 'markers_select'
    %  help_fig_minnorm_parameters.m            * - Information on figure file 'minnorm_parameters'
    %  help_fig_mri_read_tool.m                 * - Information on figure file 'mri_read_tool'
    %  help_fig_mri_scan_params.m               * - Information on figure file 'mri_scan_params'
    %  help_fig_mribox.m                        * - Information on figure file 'mribox'
    %  help_fig_parametric_estimation.m         * - Information on figure file 'parametric_estimation'
    %  help_fig_pcs_params.m                    * - Information on figure file 'pcs_params'
    %  help_fig_rap_music_parameters.m          * - Information on figure file 'rap_music_parameters'
    %  help_fig_rap_parameters.m                * - Information on figure file 'rap_parameters'
    %  help_fig_results_time_series.m           * - Information on figure file 'results_time_series'
    %  help_fig_results_update_gui.m            * - Information on figure file 'results_update_gui'
    %  help_fig_results_visualization.m         * - Information on figure file 'results_visualization'
    %  help_fig_select_folder.m                 * - Information on figure file 'select_folder'
    %  help_fig_set_dataviewing_parameters.m    * - Information on figure file 'set_dataviewing_parameters'
    %  help_fig_set_sourceviewing_parameters.m  * - Information on figure file 'set_sourceviewing_parameters'
    %  help_fig_show_signal_decomposition.m     * - Information on figure file 'show_signal_decomposition'
    %  help_fig_simulator.m                     * - Information on figure file 'simulator'
    %  help_fig_simulator_mri.m                 * - Information on figure file 'simulator_mri'
    %  help_fig_sourceimaging.m                 * - Information on figure file 'sourceimaging'
    %  help_fig_sourceimaging_parameters.m      * - Information on figure file 'sourceimaging_parameters'
    %  help_fig_study_editor.m                  * - Information on figure file 'study_editor'
    %  help_fig_subject_editor.m                * - Information on figure file 'subject_editor'
    %  help_fig_taskbar.m                       * - Information on figure file 'taskbar'
    %  help_fig_tessellation_handler.m          * - Information on figure file 'tessellation_handler'
    %  help_fig_tessellation_select.m           * - Information on figure file 'tessellation_select'
    %  help_fig_tessellation_window.m           * - Information on figure file 'tessellation_window'
    %  help_fig_timeseries.m                    * - Information on figure file 'timeseries'
    %  help_fig_view_manager.m                  * - Information on figure file 'view_manager'
    %  help_fig_visu_maps.m                     * - Information on figure file 'visu_maps'
    %  help_fig_wave_single.m                   * - Information on figure file 'wave_single'
    %  help_fig_web_pages.m                     * - Information on figure file 'web_pages'
    %  help_fig_zscore_gui.m                    * - Information on figure file 'zscore_gui'
    %  help_figure_list.m                       * - Explain the figures used by BrainStorm
    %  help_pref_currentdata.m                  * - Preference information on structure of 'CurrentData'
    %  help_pref_dateofagreement.m              * - Preference information on structure of 'DateofAgreement'
    %  help_pref_defaultsubject.m               * - Preference information on structure of 'DefaultSubject'
    %  help_pref_iuserdatabase.m                * - Preference information on structure of 'iUserDataBase'
    %  help_pref_layout.m                       * - Preference information on structure of 'Layout'
    %  help_pref_studies.m                      * - Preference information on structure of 'Studies'
    %  help_pref_studysubject.m                 * - Preference information on structure of 'StudySubject'
    %  help_pref_subjects.m                     * - Preference information on structure of 'Subjects'
    %  help_pref_usercurrentdata.m              * - Preference information on structure of 'UserCurrentData'
    %  help_pref_userdatabase.m                 * - Preference information on structure of 'UserDataBase'
    %  help_pref_version.m                      * - Preference information on structure of 'Version'
    %  help_preference_list.m                   * - Explain the preferences used by BrainStorm
    %  montreal_data_create.m                   * - Read landmarks from the Montreal Phantom and create simulated data
    %  multidipole_simulation_eeg_data_create.m  MONTREAL_DATA_CREATE - Create simulated EEG data using EGI array
    %  readme.m                                 * - What's New in Each Revision of BrainStorm 2.0 (Alpha)
    %
    % Category: Inverse Modeling
    %
    %  bst_sourceimaging.m              * - Command line call to source imaging routines
    %  bstscript_ForwardInverse_basic.m * - Basic Head Modelling and Source Imaging BrainStorm Script
    %  data_selector.fig                GUI figure for bst_sourceimaging.m, data_selector_cb.m, parametric_estimation.m
    %  lcmvbf.fig                       GUI figure for lcmvbf.m, bst_sourceimaging.m, dataplot_cb.m
    %  lcmvbf.m                         * - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
    %  least_squares_fit.m              * - multiple dipole fit using fminsearch
    %  least_squares_parameters_cb.m    * - least_squares GUI setup and execution
    %  minnorm.m                        * - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
    %  minnorm_parameters_cb.m          * - Minimum Norm GUI setup and execution
    %  muopt.m                          * - Quasi-optimality criterion for choosing the regularization parameter.
    %  parametric_estimation.fig        GUI figure for parametric_estimation.m, bst_static_taskbar.m, dataplot_cb.m, and others
    %  parametric_estimation.m          * - GUI for selecting data segments and subspaces prior to estimation
    %  rap_music_parameters.fig         GUI figure for rap_music_parameters.m, bst_static_taskbar.m, dataplot_cb.m, and others
    %  rap_music_parameters.m           * - Application M-file for rap_music_parameters.fig
    %  rapmusic_gui.m                   * - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
    %  regcheck.m                       * - Check the regularization tag
    %  regsubspace.m                    * - Determine the subspace based on the regularization method
    %  subcorr_gui.m                    * - Subcorr function custom to the gui features
    %
    % Category: Utility - General
    %
    %  avw2brainstorm.m            * - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
    %  brainstorm.m                * - Go to the BrainStorm home web page
    %  brainstorm_reset.m          * - Clear Matlab BrainStorm preferences, remove default data
    %  dip.m                       * - UNKNOWN, move to archive?
    %  engstr.m                    * - create a string for the number in engineering format
    %  find_brainstorm_files.m     * - Find BrainStorm subjects or study files, create Menu
    %  find_brainstorm_structure.m * - Find all of the available files with a subject or study
    %  find_subdir.m               * - Find all subdirectories in a BrainStorm path
    %  genpath2cell.m              * - convert path or generated path string into cell array
    %  get_channel.m               * - Get the Channel information associated with a particular data file
    %  get_user_directory.m        * - Get the user's root directory information
    %  ginput2.m                   * - Graphical input from mouse.
    %  grayish.m                   * - % gray out the lower end of a spectrum for less severe palette
    %  load_raw.m                  * - Read a BrainStorm "raw" format (.txt or .raw) matrix
    %  make_contents.mat           Mat-file
    %  mby3check.m                 * - Check to see if matrix is m by 3 or 3 by m.
    %  mby6check.m                 * - Check to see if matrix is m by 6 or 6 by m.
    %  meg4read.m                  * - READ CTF MEG4 file format
    %  mutincomp.m                 * - Mutual incompatibility among checkboxes and radiobuttons
    %  norcol.m                    * - (French) squared sum of each column in a matrix
    %  norlig.m                    * - (French) Norm of the rows of a matrix
    %  offset.m                    * - each column in inmat such that a plot(outmat) looks good.
    %  qslim.m                     * - Mesh simplification, wrapper function for Garland's QSLIM executable program
    %  read_ctf_mri.m              * - Read CTF MRI format (Version 2.1)
    %  readdfs.m                   * - (overwrite succinct one line summary here)
    %  readRaw.m                   * - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
    %  save_fieldnames.m           * - Save just the fieldnames of a structure to a mat-file
    %  save_raw.m                  * - Save out a matrix in BrainStorm "raw" format, based on extension
    %  select_folder.fig           GUI figure for select_folder.m, database_manager.m
    %  select_folder.m             * - Application M-file for bst_SelectFolder.fig
    %  str2mat0.m                  * - (Deprecated) Form text matrix from individual strings.
    %  str_repeater.m              * - Repeat string format and separator to display data
    %  vec.m                       * - Lexicographical ordering of a matrix, A(:).
    %  web_pages.fig               GUI figure for web_pages.m, bst_static_taskbar.m
    %  web_pages.m                 * - Listbox of relevant BrainStorm web pages and email addresses
    %  windclf.m                   * - Reset and clear the figure, retaining the NAME property
    %  windfind.m                  * - Find or create a particular window using it's NAME property
    %
    % Category: Utility - Numeric
    %
    %  aic_mdl.m                * - Calculate Information Theoretic Criteria for data dimensionality
    %  blk_diag.m               * - Make or extract a sparse block diagonal matrix
    %  blk_lex.m                * - Lexicographically order the submatrices in A
    %  brainstorm_filt.m        * - Zero-phase filter dedicated to multi-channel MEG and EEG data
    %  carto_sph.m              * - (sensloc,v,center)
    %  chi_pdf_fit.fig          GUI figure with unknown calls
    %  closest.m                * - Find point in one array closest to point in another array
    %  colnorm.m                * - Calculate L2 norm for each column of a matrix and normalize
    %  covariance_generator.fig GUI figure with unknown calls
    %  cross_mat.m              * - Sparse cross product matrix good for matrix equivalent operation
    %  crossprod.m              * - Cross product between two sets, each set with three columns
    %  dist_sph.m               * - FMINS distance function used to minimize the fit to a sphere
    %  dlegpoly.m               * - Evaluate the first N Legendre polynomials
    %  dotprod.m                * - Dot product of two vectors (deprecated)
    %  embedding.m              * - computing the approximate embedding surface
    %  fidufit.m                * - (overwrite succinct one line summary here)
    %  findclosest.m            * - Find entries of closest elements between two vectors
    %  fronorm.m                * - Fast calculation of the Frobenius Norm of a Matrix
    %  hanning_window.m         * - Calculate the hanning window function for n points
    %  inorcol.m                * - Compute the (pseudo)inverse of the column norms of matrix Mat
    %  modulo.m                 * - Compute the modulo
    %  mri2scs.m                * - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
    %  ray_intersect.m          * - find intersection of a ray with a set of faces
    %  rownorm.m                * - Calculate the L2 norm of each row of a matrix
    %  scs2mri.m                * - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
    %  shepards.m               * - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
    %  sort_key.m               * - Sort with column keys
    %  svd0.m                   * - Economy SVD in both U and V, S returned sparse diagonal
    %  tessellation_stats.m     * - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
    %  transform.m              * - Transform coordinates between PCS and MRI
    %  tri_area.m               * - Find areas of all triangles
    %
    % Category: Visualization
    %
    %  bst_imaging_display.m            * - : display utility for cortical distributed source imaging
    %  bst_mriviewer.fig                GUI figure for bst_mriviewer.m, bst_static_taskbar.m, dataplot_cb.m, and others
    %  bst_mriviewer.m                  * - Application M-file for bst_mriviewer.fig
    %  bst_wavedata_display.m           * - Various ways of loooking at time series
    %  c_activ.m                        * - Finding a colormap to code deepness and activation
    %  catci.m                          * - computing color coding for activation on the vertices
    %  contraste.m                      * - computing the colormap coding deepness
    %  curvature_cortex.m               * - calculates cortex curvature
    %  depthgauge.m                     * - Make a depthgauge for measuring depth
    %  faces_connectivity.m             * - Generate the connections of faces to a vertex
    %  filterGUI.fig                    GUI figure for filterGUI.m, dataplot_cb.m
    %  filterGUI.m                      * - M-file for filterGUI.fig
    %  ihot.mat                         Mat-file
    %  interp_mail.m                    * - (French) Interpolate coordinates of the "maillage"
    %  leaflet.m                        * - (overwrite succinct one line summary here)
    %  leaflet.mat                      Mat-file
    %  load_BsTMRI.m                    * - Load BrainStorm MRI format
    %  manage_corticalscouts.fig        GUI figure for manage_corticalscouts.m, dataplot_cb.m
    %  manage_corticalscouts.m          * - Application M-file for manage_corticalscouts.fig
    %  mapping.fig                      GUI figure for bst_imaging_display.m, bst_mriviewer.m, bst_wavedata_display.m, and others
    %  markers_select.fig               GUI figure with unknown calls
    %  mri_read_tool.fig                GUI figure for mri_read_tool.m, bst_static_taskbar.m, make_default_subject.m, and others
    %  mri_read_tool.m                  * - AOS Version Application M-file to read in MRI and manipulate
    %  mribox.fig                       GUI figure for mritool_cb.m
    %  mritool_cb.m                     * - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
    %  patch_swell.m                    * - enlarge a patch by appending the next set of adjacent vertices
    %  plot3d.m                         * - 'plot3' the given three column data
    %  plot_dipole.m                    * - (r,n,s,c)
    %  plot_patch.m                     * - plots a vertex or face and its neighbors
    %  results_time_series.fig          GUI figure for results_time_series.m, rapmusic_gui.m
    %  results_time_series.m            * - Application M-file for results_time_series.fig
    %  results_update.m                 * - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
    %  results_update_gui.fig           GUI figure for results_update.m
    %  results_visualization.fig        GUI figure for results_visualization.m, bst_static_taskbar.m, rapmusic_gui.m, and others
    %  results_visualization.m          * - Application M-file View the results of source modeling
    %  separation.m                     * - Splitting the brain into 2 parts
    %  set_sourceviewing_parameters.fig GUI figure for set_sourceviewing_parameters.m, dataplot_cb.m
    %  set_sourceviewing_parameters.m   * - Application M-file for set_sourceviewing_parameters.fig
    %  show_signal_decomposition.fig    GUI figure for show_signal_decomposition.m
    %  show_signal_decomposition.m      * - Application M-file for show_signal_decomposition.fig
    %  smooth_cortex.m                  * - Smoothes tesselation
    %  sourceimaging.fig                GUI figure for sourceimaging.m, bst_sourceimaging.m, bst_static_taskbar.m, and others
    %  sourceimaging.m                  * - Main switch to source imaging routines
    %  sourceimaging_parameters.fig     GUI figure with unknown calls
    %  tessellation_handler.fig         GUI figure for tessellation_handler.m, set_sourceviewing_parameters.m
    %  tessellation_handler.m           * - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
    %  tessellation_outwards.m          * - Ensure that tessellation ordering is "outwards"
    %  togglebuttoncolor.m              * - : change button color of toggle button
    %  toggleface.m                     * - Toggle the faces and edges as invisible
    %  togglelight.m                    * - toggle the lighting flat or phong
    %  vertices_connectivity.m          * - Generate the connections between vertices
    %  view_surface.m                   * - Convenient function to consistently plot surfaces
    %  visu_maps.fig                    GUI figure with unknown calls
    %  warp_everything_bst.m             WARP_EVERYTHING - (summary line here)
    %  wave_single.fig                  GUI figure with unknown calls
    %
    % Category: All Alphabetical
    %
    %  aic_mdl.m                                * - Calculate Information Theoretic Criteria for data dimensionality
    %  avw2brainstorm.m                         * - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
    %  bem_gain.m                               * - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
    %  bem_kernel.m                             * - computes kernel matrices for EEG and MEG
    %  bem_param_select.fig                     GUI figure for headmodeler_gui.m
    %  bem_xfer.m                               * - Computation of the MEG and/or EEG BEM transfer matrices
    %  berg.m                                   * - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
    %  bestfitsph.m                             * - Find best fitting sphere
    %  blk_diag.m                               * - Make or extract a sparse block diagonal matrix
    %  blk_lex.m                                * - Lexicographically order the submatrices in A
    %  brainstorm.m                             * - Go to the BrainStorm home web page
    %  brainstorm_filt.m                        * - Zero-phase filter dedicated to multi-channel MEG and EEG data
    %  brainstorm_reset.m                       * - Clear Matlab BrainStorm preferences, remove default data
    %  browse_study_folder.m                    * - Find all *brainstormstudy.mat files in a directory tree
    %  bst_cactivcmap.mat                       Mat-file
    %  bst_color_scheme.m                       * - apply the BrainStorm color, font, size scheme to the figure
    %  bst_extractmarkersctf.m                  * - Extract signal block from a .ds CTF data set
    %  bst_headmodeler.m                        * - Solution to the MEG/EEG forward problem
    %  bst_imaging_display.m                    * - : display utility for cortical distributed source imaging
    %  bst_layout.m                             * - Manage all BST windows in a standard layout
    %  bst_message_window.fig                   GUI figure for bst_message_window.m, avw2brainstorm.m, bem_gain.m, and others
    %  bst_message_window.m                     * - Application M-file for bst_message_window.fig, with NON CALLBACKS
    %  bst_mriviewer.fig                        GUI figure for bst_mriviewer.m, bst_static_taskbar.m, dataplot_cb.m, and others
    %  bst_mriviewer.m                          * - Application M-file for bst_mriviewer.fig
    %  bst_readmarkerfilectf.m                  * - read_markerf reads the CTF markerfile MarkerFile.mrk
    %  bst_sourceimaging.m                      * - Command line call to source imaging routines
    %  bst_splashscreen.fig                     GUI figure for bst_splashscreen.m, bst_static_taskbar.m
    %  bst_splashscreen.m                       * - GUI app for license information and agreement
    %  bst_static_taskbar.fig                   GUI figure for bst_static_taskbar.m, bst_wavedata_display.m, data_manager.m, and others
    %  bst_static_taskbar.m                     * - BrainStorm's primary taskbar always visible
    %  bst_wavedata_display.m                   * - Various ways of loooking at time series
    %  bst_win_manager.m                        * - GUI Window management for BrainStorm
    %  bstscript_ForwardInverse_basic.m         * - Basic Head Modelling and Source Imaging BrainStorm Script
    %  c_activ.m                                * - Finding a colormap to code deepness and activation
    %  carto_sensors.m                          * - (Rcoils,v);
    %  carto_sph.m                              * - (sensloc,v,center)
    %  catci.m                                  * - computing color coding for activation on the vertices
    %  channel_select.fig                       GUI figure for dataplot_cb.m
    %  chi_pdf_fit.fig                          GUI figure with unknown calls
    %  closest.m                                * - Find point in one array closest to point in another array
    %  colnorm.m                                * - Calculate L2 norm for each column of a matrix and normalize
    %  contents.m                               This Contents File
    %  contraste.m                              * - computing the colormap coding deepness
    %  covariance_generator.fig                 GUI figure with unknown calls
    %  covariance_plots.fig                     GUI figure for covariance_plots.m
    %  covariance_plots.m                       * - M-file for covariance_generator, covariance_plots
    %  cpot.m                                   * - UNKNOWN, Send to Archive?
    %  cross_mat.m                              * - Sparse cross product matrix good for matrix equivalent operation
    %  crossprod.m                              * - Cross product between two sets, each set with three columns
    %  curvature_cortex.m                       * - calculates cortex curvature
    %  data_manager.fig                         GUI figure for data_manager.m, bst_static_taskbar.m, extract_channels.m, and others
    %  data_manager.m                           * - Edit/select database, subjects, studies, datasets, build headmodels, import data.
    %  data_selector.fig                        GUI figure for bst_sourceimaging.m, data_selector_cb.m, parametric_estimation.m
    %  data_selector_cb.m                       * - Callback function to setup and execute inverse techniques
    %  database_manager.fig                     GUI figure for database_manager.m, data_manager.m
    %  database_manager.m                       * - GUI to edit the User Databases and select one
    %  dataplot.fig                             GUI figure for bst_imaging_display.m, bst_static_taskbar.m, bst_wavedata_display.m, and others
    %  dataplot_cb.m                            * - : Callback switchyard for the DATAViewer Tool
    %  depthgauge.m                             * - Make a depthgauge for measuring depth
    %  dip.m                                    * - UNKNOWN, move to archive?
    %  dist_sph.m                               * - FMINS distance function used to minimize the fit to a sphere
    %  dlegpoly.m                               * - Evaluate the first N Legendre polynomials
    %  dotprod.m                                * - Dot product of two vectors (deprecated)
    %  ds2brainstorm.m                          * - Convert a DS CTF dataset into BrainStorm format
    %  eeg2bs.m                                 * - (fnamein,fnameout,type,channel)
    %  eeg_bem.m                                * - Calculate the electric potential , BEM approach, arbitrary orientation
    %  eeg_load_scan3avg.m                      * - Read a NeuroScan 3.x AVG File
    %  eeg_sph.m                                * - Calculate the electric potential , spherical head, arbitrary orientation
    %  elpos2bs.m                               * - this function converts electrode position files into BrainStorm Channel format
    %  embedding.m                              * - computing the approximate embedding surface
    %  engstr.m                                 * - create a string for the number in engineering format
    %  extract_channels.m                       * - Extract the channels to be used in this particular run
    %  extract_ctf_markers.m                    * - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
    %  faces_connectivity.m                     * - Generate the connections of faces to a vertex
    %  fidufit.m                                * - (overwrite succinct one line summary here)
    %  fidufit.mat                              Mat-file
    %  file_selection_win.fig                   GUI figure for file_selection_win.m, bst_mriviewer.m, dataplot_cb.m, and others
    %  file_selection_win.m                     * - Application M-file for file_selection_win.fig
    %  filterGUI.fig                            GUI figure for filterGUI.m, dataplot_cb.m
    %  filterGUI.m                              * - M-file for filterGUI.fig
    %  find_brainstorm_files.m                  * - Find BrainStorm subjects or study files, create Menu
    %  find_brainstorm_structure.m              * - Find all of the available files with a subject or study
    %  find_mfiles.m                            * - Find m-files that open a particular figure handle or the GCF
    %  find_subdir.m                            * - Find all subdirectories in a BrainStorm path
    %  findclosest.m                            * - Find entries of closest elements between two vectors
    %  fronorm.m                                * - Fast calculation of the Frobenius Norm of a Matrix
    %  gain_interp.m                            * - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
    %  generic_listbox_win.fig                  GUI figure for importdata.m, subject_editor.m
    %  genpath2cell.m                           * - convert path or generated path string into cell array
    %  geom100.mat                              Mat-file
    %  get_channel.m                            * - Get the Channel information associated with a particular data file
    %  get_gain.m                               * - Get a set of source foward fields from a .bin gain matrix file
    %  get_user_directory.m                     * - Get the user's root directory information
    %  ginput2.m                                * - Graphical input from mouse.
    %  good_channel.m                           * - Extract channels of a given type
    %  grayish.m                                * - % gray out the lower end of a spectrum for less severe palette
    %  gridmaker.m                              * - 3D regular gridding of surface envelope
    %  hanning_window.m                         * - Calculate the hanning window function for n points
    %  headmodeler_gui.fig                      GUI figure for headmodeler_gui.m, bst_static_taskbar.m, data_manager.m, and others
    %  headmodeler_gui.m                        * - Application M-file to build head models
    %  help_data_bststudy.m                     * - Information on database files of type 'bststudy'
    %  help_data_bstsubject.m                   * - Information on database files of type 'bstsubject'
    %  help_data_channel.m                      * - Information on database files of type 'channel'
    %  help_data_data.m                         * - Information on database files of type 'data'
    %  help_data_headmodel.m                    * - Information on database files of type 'headmodel'
    %  help_data_image.m                        * - Information on database files of type 'image'
    %  help_data_raw.m                          * - Information on database files of type 'raw'
    %  help_data_results.m                      * - Information on database files of type 'results'
    %  help_data_tess.m                         * - Information on database files of type 'tess'
    %  help_data_triconn.m                      * - Information on database files of type 'triconn'
    %  help_data_vertconn.m                     * - Information on database files of type 'vertconn'
    %  help_database_list.m                     * - Explain the database used by BrainStorm
    %  help_editing_brainstorm.m                * - Information on how to update and edit your version of BrainStorm
    %  help_fig_bem_param_select.m              * - Information on figure file 'bem_param_select'
    %  help_fig_bst_message_window.m            * - Information on figure file 'bst_message_window'
    %  help_fig_bst_splashscreen.m              * - Information on figure file 'bst_splashscreen'
    %  help_fig_bst_static_taskbar.m            * - Information on figure file 'bst_static_taskbar'
    %  help_fig_channel_select.m                * - Information on figure file 'channel_select'
    %  help_fig_chi_pdf_fit.m                   * - Information on figure file 'chi_pdf_fit'
    %  help_fig_covariance_generator.m          * - Information on figure file 'covariance_generator'
    %  help_fig_covariance_plots.m              * - Information on figure file 'covariance_plots'
    %  help_fig_data_manager.m                  * - Information on figure file 'data_manager'
    %  help_fig_data_selector.m                 * - Information on figure file 'data_selector'
    %  help_fig_database_manager.m              * - Information on figure file 'database_manager'
    %  help_fig_dataplot.m                      * - Information on figure file 'dataplot'
    %  help_fig_generic_listbox_win.m           * - Information on figure file 'generic_listbox_win'
    %  help_fig_headmodeler_gui.m               * - Information on figure file 'headmodeler_gui'
    %  help_fig_help_manager.m                  * - Information on figure file 'help_manager'
    %  help_fig_importdata.m                    * - Information on figure file 'importdata'
    %  help_fig_layout_manager.m                * - Information on figure file 'layout_manager'
    %  help_fig_least_squares_parameters.m      * - Information on figure file 'least_squares_parameters'
    %  help_fig_listbox_win.m                   * - Information on figure file 'listbox_win'
    %  help_fig_listchan.m                      * - Information on figure file 'listchan'
    %  help_fig_manage_corticalscouts.m         * - Information on figure file 'manage_corticalscouts'
    %  help_fig_map_single.m                    * - Information on figure file 'map_single'
    %  help_fig_mapping.m                       * - Information on figure file 'mapping'
    %  help_fig_markers_select.m                * - Information on figure file 'markers_select'
    %  help_fig_minnorm_parameters.m            * - Information on figure file 'minnorm_parameters'
    %  help_fig_mri_read_tool.m                 * - Information on figure file 'mri_read_tool'
    %  help_fig_mri_scan_params.m               * - Information on figure file 'mri_scan_params'
    %  help_fig_mribox.m                        * - Information on figure file 'mribox'
    %  help_fig_parametric_estimation.m         * - Information on figure file 'parametric_estimation'
    %  help_fig_pcs_params.m                    * - Information on figure file 'pcs_params'
    %  help_fig_rap_music_parameters.m          * - Information on figure file 'rap_music_parameters'
    %  help_fig_rap_parameters.m                * - Information on figure file 'rap_parameters'
    %  help_fig_results_time_series.m           * - Information on figure file 'results_time_series'
    %  help_fig_results_update_gui.m            * - Information on figure file 'results_update_gui'
    %  help_fig_results_visualization.m         * - Information on figure file 'results_visualization'
    %  help_fig_select_folder.m                 * - Information on figure file 'select_folder'
    %  help_fig_set_dataviewing_parameters.m    * - Information on figure file 'set_dataviewing_parameters'
    %  help_fig_set_sourceviewing_parameters.m  * - Information on figure file 'set_sourceviewing_parameters'
    %  help_fig_show_signal_decomposition.m     * - Information on figure file 'show_signal_decomposition'
    %  help_fig_simulator.m                     * - Information on figure file 'simulator'
    %  help_fig_simulator_mri.m                 * - Information on figure file 'simulator_mri'
    %  help_fig_sourceimaging.m                 * - Information on figure file 'sourceimaging'
    %  help_fig_sourceimaging_parameters.m      * - Information on figure file 'sourceimaging_parameters'
    %  help_fig_study_editor.m                  * - Information on figure file 'study_editor'
    %  help_fig_subject_editor.m                * - Information on figure file 'subject_editor'
    %  help_fig_taskbar.m                       * - Information on figure file 'taskbar'
    %  help_fig_tessellation_handler.m          * - Information on figure file 'tessellation_handler'
    %  help_fig_tessellation_select.m           * - Information on figure file 'tessellation_select'
    %  help_fig_tessellation_window.m           * - Information on figure file 'tessellation_window'
    %  help_fig_timeseries.m                    * - Information on figure file 'timeseries'
    %  help_fig_view_manager.m                  * - Information on figure file 'view_manager'
    %  help_fig_visu_maps.m                     * - Information on figure file 'visu_maps'
    %  help_fig_wave_single.m                   * - Information on figure file 'wave_single'
    %  help_fig_web_pages.m                     * - Information on figure file 'web_pages'
    %  help_fig_zscore_gui.m                    * - Information on figure file 'zscore_gui'
    %  help_figure_list.m                       * - Explain the figures used by BrainStorm
    %  help_manager.fig                         GUI figure for help_manager.m, bst_static_taskbar.m
    %  help_manager.m                           * - Application M-file for help_manager.fig
    %  help_pref_currentdata.m                  * - Preference information on structure of 'CurrentData'
    %  help_pref_dateofagreement.m              * - Preference information on structure of 'DateofAgreement'
    %  help_pref_defaultsubject.m               * - Preference information on structure of 'DefaultSubject'
    %  help_pref_iuserdatabase.m                * - Preference information on structure of 'iUserDataBase'
    %  help_pref_layout.m                       * - Preference information on structure of 'Layout'
    %  help_pref_studies.m                      * - Preference information on structure of 'Studies'
    %  help_pref_studysubject.m                 * - Preference information on structure of 'StudySubject'
    %  help_pref_subjects.m                     * - Preference information on structure of 'Subjects'
    %  help_pref_usercurrentdata.m              * - Preference information on structure of 'UserCurrentData'
    %  help_pref_userdatabase.m                 * - Preference information on structure of 'UserDataBase'
    %  help_pref_version.m                      * - Preference information on structure of 'Version'
    %  help_preference_list.m                   * - Explain the preferences used by BrainStorm
    %  hrow_linear.m                            * - Compute row in BEM geometry matrix for linear collocation
    %  ihot.mat                                 Mat-file
    %  importdata.fig                           GUI figure for importdata.m, data_manager.m, ds2brainstorm.m, and others
    %  importdata.m                             * - Case Switchyard for importing data from major MEG and EEG systems
    %  inorcol.m                                * - Compute the (pseudo)inverse of the column norms of matrix Mat
    %  interp_mail.m                            * - (French) Interpolate coordinates of the "maillage"
    %  kl_galerkin.m                            * - Galerking kernel for BEM of linear model
    %  kl_gram.m                                * - Kernel computation used in bem_xfer
    %  layout_manager.fig                       GUI figure for layout_manager.m, bst_static_taskbar.m
    %  layout_manager.m                         * - Application M-file to manage the window layout
    %  lcmvbf.fig                               GUI figure for lcmvbf.m, bst_sourceimaging.m, dataplot_cb.m
    %  lcmvbf.m                                 * - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
    %  leaflet.m                                * - (overwrite succinct one line summary here)
    %  leaflet.mat                              Mat-file
    %  least_squares_fit.m                      * - multiple dipole fit using fminsearch
    %  least_squares_parameters.fig             GUI figure for data_selector_cb.m, least_squares_parameters_cb.m, parametric_estimation.m
    %  least_squares_parameters_cb.m            * - least_squares GUI setup and execution
    %  listbox_win.fig                          GUI figure for importdata.m, subject_editor.m
    %  listchan.fig                             GUI figure for dataplot_cb.m
    %  load_brainstorm_file.m                   * - load or try to find and load the BrainStorm file.
    %  load_BsTMRI.m                            * - Load BrainStorm MRI format
    %  load_fif_apos.m                          * - Load in position information from Neuromag 122 ".apos" file
    %  load_fif_asc.m                           * - Load data from Neuromag 122 .fif file converted to ascii
    %  load_raw.m                               * - Read a BrainStorm "raw" format (.txt or .raw) matrix
    %  load_smf.m                               * - Load a simply written SMF file into the faces vertices structure
    %  logobrainstorm.jpg                       Figure file
    %  make_contents.mat                        Mat-file
    %  make_default_database.m                  * - Confirm or Create a default database, default study, default subject
    %  make_default_study.m                     * - Create simulated default data and link to a simulated subject
    %  make_default_subject.m                   * - Make a brainstormsubject and simulated MRI in a folder
    %  makeuswait.m                             * - change the figure pointer according to action
    %  manage_corticalscouts.fig                GUI figure for manage_corticalscouts.m, dataplot_cb.m
    %  manage_corticalscouts.m                  * - Application M-file for manage_corticalscouts.fig
    %  map_single.fig                           GUI figure for dataplot_cb.m
    %  mapping.fig                              GUI figure for bst_imaging_display.m, bst_mriviewer.m, bst_wavedata_display.m, and others
    %  markers_select.fig                       GUI figure with unknown calls
    %  mby3check.m                              * - Check to see if matrix is m by 3 or 3 by m.
    %  mby6check.m                              * - Check to see if matrix is m by 6 or 6 by m.
    %  meg4read.m                               * - READ CTF MEG4 file format
    %  meg4write.m                              * - WRITE CTF MEG4 file format
    %  meg_bem.m                                * - Calculate the mag field, BEM approach, arbitrary orientation
    %  mes.m                                    * - (overwrite succinct one line summary here)
    %  mesh2brainstorm.m                        * - Import .mesh tessellation files (BrainVisa interchange)
    %  minnorm.m                                * - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
    %  minnorm_parameters_cb.m                  * - Minimum Norm GUI setup and execution
    %  modulo.m                                 * - Compute the modulo
    %  montreal_data_create.m                   * - Read landmarks from the Montreal Phantom and create simulated data
    %  mri2scs.m                                * - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
    %  mri_parameters.fig                       GUI figure for mri_parameters.m, bst_mriviewer.m
    %  mri_parameters.m                         * - Application M-file for mri_parameters.fig
    %  mri_read_tool.fig                        GUI figure for mri_read_tool.m, bst_static_taskbar.m, make_default_subject.m, and others
    %  mri_read_tool.m                          * - AOS Version Application M-file to read in MRI and manipulate
    %  mribox.fig                               GUI figure for mritool_cb.m
    %  mritool_cb.m                             * - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
    %  multidipole_simulation_eeg_data_create.m  MONTREAL_DATA_CREATE - Create simulated EEG data using EGI array
    %  muopt.m                                  * - Quasi-optimality criterion for choosing the regularization parameter.
    %  mutincomp.m                              * - Mutual incompatibility among checkboxes and radiobuttons
    %  norcol.m                                 * - (French) squared sum of each column in a matrix
    %  norlig.m                                 * - (French) Norm of the rows of a matrix
    %  nowzooming.m                             * - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
    %  offset.m                                 * - each column in inmat such that a plot(outmat) looks good.
    %  os_meg.m                                 * - Calculate the (overlapping) sphere models for MEG
    %  overlapping_sphere.m                     * - Create overlapping spheres for E/MEG channels.
    %  overlapping_sphere_fmins.m               * - for use with OVERLAPPING_SPHERE
    %  parametric_estimation.fig                GUI figure for parametric_estimation.m, bst_static_taskbar.m, dataplot_cb.m, and others
    %  parametric_estimation.m                  * - GUI for selecting data segments and subspaces prior to estimation
    %  patch_swell.m                            * - enlarge a patch by appending the next set of adjacent vertices
    %  pcs_params.fig                           GUI figure for pcs_params.m, bst_mriviewer.m, mri_read_tool.m
    %  pcs_params.m                             * - Application M-file to set the parameters of the patient coordinates
    %  phantom_channel_assignment.fig           GUI figure for phantom_channel_assignment.m, tess_align_tool.m
    %  phantom_channel_assignment.m             * - Application M-file for phantom_channel_assignment.fig
    %  pleg.m                                   * - Used in CPOT, Legendre polynomials
    %  plot3d.m                                 * - 'plot3' the given three column data
    %  plot_dipole.m                            * - (r,n,s,c)
    %  plot_patch.m                             * - plots a vertex or face and its neighbors
    %  prepfig.m                                * - Prepare figure
    %  qslim.m                                  * - Mesh simplification, wrapper function for Garland's QSLIM executable program
    %  rap_music_parameters.fig                 GUI figure for rap_music_parameters.m, bst_static_taskbar.m, dataplot_cb.m, and others
    %  rap_music_parameters.m                   * - Application M-file for rap_music_parameters.fig
    %  rapmusic_gui.m                           * - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
    %  ray_intersect.m                          * - find intersection of a ray with a set of faces
    %  read_besa.m                              * - (overwrite succinct one line summary here)
    %  read_ctf_mri.m                           * - Read CTF MRI format (Version 2.1)
    %  read_gain.m                              * - Extract parts or a compete gain matrix from .bin binay gain file
    %  readdfs.m                                * - (overwrite succinct one line summary here)
    %  readdsgl.m                               * - Loads a BrainSuite .dsgl format tessellation file.
    %  readmarkerfile_ctf.m                     * - Read marker information from CTF MarkerFile.mrk
    %  readme.m                                 * - What's New in Each Revision of BrainStorm 2.0 (Alpha)
    %  readRaw.m                                * - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
    %  regcheck.m                               * - Check the regularization tag
    %  regsubspace.m                            * - Determine the subspace based on the regularization method
    %  results_time_series.fig                  GUI figure for results_time_series.m, rapmusic_gui.m
    %  results_time_series.m                    * - Application M-file for results_time_series.fig
    %  results_update.m                         * - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
    %  results_update_gui.fig                   GUI figure for results_update.m
    %  results_visualization.fig                GUI figure for results_visualization.m, bst_static_taskbar.m, rapmusic_gui.m, and others
    %  results_visualization.m                  * - Application M-file View the results of source modeling
    %  rownorm.m                                * - Calculate the L2 norm of each row of a matrix
    %  save_fieldnames.m                        * - Save just the fieldnames of a structure to a mat-file
    %  save_raw.m                               * - Save out a matrix in BrainStorm "raw" format, based on extension
    %  save_smf.m                               * - Save out a file in a simple form of the SMF format
    %  scs2mri.m                                * - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
    %  select_folder.fig                        GUI figure for select_folder.m, database_manager.m
    %  select_folder.m                          * - Application M-file for bst_SelectFolder.fig
    %  sensor_122.m                             * - Return the Neuromag 122 information
    %  sensor_axial.m                           * - Generate axial gradiometers
    %  sensor_planar.m                          * - Generate planar gradiometers
    %  sensor_ring.m                            * - Generate rings of sensors about a sphere roughly uniformly spaced.
    %  sensor_spacing.m                         * - generate sites roughly evenly spaced about a hemisphere.
    %  separation.m                             * - Splitting the brain into 2 parts
    %  set_dataviewing_parameters.fig           GUI figure for dataplot_cb.m
    %  set_sourceviewing_parameters.fig         GUI figure for set_sourceviewing_parameters.m, dataplot_cb.m
    %  set_sourceviewing_parameters.m           * - Application M-file for set_sourceviewing_parameters.fig
    %  shepards.m                               * - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
    %  show_signal_decomposition.fig            GUI figure for show_signal_decomposition.m
    %  show_signal_decomposition.m              * - Application M-file for show_signal_decomposition.fig
    %  simulator.fig                            GUI figure for simulator.m, bst_static_taskbar.m, make_default_study.m, and others
    %  simulator.m                              * - Application M-file for simulator.fig
    %  simulator_mri.fig                        GUI figure for simulator_mri.m, bst_static_taskbar.m, make_default_subject.m
    %  simulator_mri.m                          * - Application M-file to make a simulated spherical MRI
    %  smooth_cortex.m                          * - Smoothes tesselation
    %  solid_angle2.m                           * - Solid angle of a viewed triangle
    %  sort_key.m                               * - Sort with column keys
    %  source_grid.m                            * - generate variable grid of possible source locations
    %  source_grids.m                           * - Generate source grids for parametric model searches
    %  source_tess.m                            * - generate variable grid of possible source locations
    %  sourceimaging.fig                        GUI figure for sourceimaging.m, bst_sourceimaging.m, bst_static_taskbar.m, and others
    %  sourceimaging.m                          * - Main switch to source imaging routines
    %  sourceimaging_parameters.fig             GUI figure with unknown calls
    %  sph_rphtestgrid2.mat                     Mat-file
    %  sph_rphtestgrid3.mat                     Mat-file
    %  str2mat0.m                               * - (Deprecated) Form text matrix from individual strings.
    %  str_repeater.m                           * - Repeat string format and separator to display data
    %  study_editor.fig                         GUI figure for study_editor.m, data_manager.m, importdata.m
    %  study_editor.m                           * - GUI to edit the BrainStorm Study information, case switchyard
    %  subcorr_gui.m                            * - Subcorr function custom to the gui features
    %  subject_editor.fig                       GUI figure for subject_editor.m, bst_static_taskbar.m, data_manager.m, and others
    %  subject_editor.m                         * - GUI to edit the BrainStorm Subject information, case switchyard
    %  surf2vol_interp.m                        * - (overwrite succinct one line summary here)
    %  svd0.m                                   * - Economy SVD in both U and V, S returned sparse diagonal
    %  tess_align_tool.fig                      GUI figure for tess_align_tool.m, subject_editor.m
    %  tess_align_tool.m                        * - Application M-file for tess_align_tool.fig
    %  tesselate.m                              * - tesselate based on the sensor_ring program
    %  tessellation_handler.fig                 GUI figure for tessellation_handler.m, set_sourceviewing_parameters.m
    %  tessellation_handler.m                   * - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
    %  tessellation_outwards.m                  * - Ensure that tessellation ordering is "outwards"
    %  tessellation_stats.m                     * - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
    %  tessellation_window.fig                  GUI figure for bst_imaging_display.m, dataplot_cb.m, manage_corticalscouts.m, and others
    %  togglebuttoncolor.m                      * - : change button color of toggle button
    %  toggleface.m                             * - Toggle the faces and edges as invisible
    %  togglelight.m                            * - toggle the lighting flat or phong
    %  toolbox_cross_ref.mat                    Mat-file
    %  trans_matrix.m                           * - calculate BEM transfer matrices for EEG and MEG
    %  transform.m                              * - Transform coordinates between PCS and MRI
    %  tri2brainstorm.m                         * - Read .tri file into BrainStorm format
    %  tri_area.m                               * - Find areas of all triangles
    %  tri_interp.m                             * - Compute the interpolation matrix from a cortical tessellation to the MRI volume
    %  vec.m                                    * - Lexicographical ordering of a matrix, A(:).
    %  vertices_connectivity.m                  * - Generate the connections between vertices
    %  view_surface.m                           * - Convenient function to consistently plot surfaces
    %  visu_maps.fig                            GUI figure with unknown calls
    %  warp_everything_bst.m                     WARP_EVERYTHING - (summary line here)
    %  wave_single.fig                          GUI figure with unknown calls
    %  web_pages.fig                            GUI figure for web_pages.m, bst_static_taskbar.m
    %  web_pages.m                              * - Listbox of relevant BrainStorm web pages and email addresses
    %  weighting_scalar.m                       * - For use with Overlapping Sphere
    %  windclf.m                                * - Reset and clear the figure, retaining the NAME property
    %  windfind.m                               * - Find or create a particular window using it's NAME property
    %  zhang_fit.m                              * - Compute 'Berg' parameters for EEG multilayer sphere
    %  zscore_gui.fig                           GUI figure for zscore_gui.m, dataplot_cb.m
    %  zscore_gui.m                             * - : management of zscore visualization
    %
    % Category: Unknown Category
    %
    %  bst_cactivcmap.mat    Mat-file
    %  fidufit.mat           Mat-file
    %  geom100.mat           Mat-file
    %  sph_rphtestgrid2.mat  Mat-file
    %  sph_rphtestgrid3.mat  Mat-file
    %  toolbox_cross_ref.mat Mat-file
    %
    % Category: Missing in Toolbox
    %
    %  No files in this category
    %
    % Category: Archive
    %
    %  cpot.m            * - UNKNOWN, Send to Archive?
    %  mes.m             * - (overwrite succinct one line summary here)
    %  pleg.m            * - Used in CPOT, Legendre polynomials
    %  prepfig.m         * - Prepare figure
    %  surf2vol_interp.m * - (overwrite succinct one line summary here)

    %<autobegin> ---------------------- 02-Nov-2004 14:32:29 -----------------------
    % --------- Automatically Generated Comments Block Using AUTO_COMMENTS ---------
    %
    % CATEGORY: Help
    %
    % At Check-in: $Author: Mosher $  $Revision: 63 $  $Date: 11/02/04 2:33p $
    %
    % This software is part of BrainStorm Toolbox Version 2.0 (Alpha) 29-Oct-2004
    %
    % Principal Investigators and Developers:
    % ** Richard M. Leahy, PhD, Signal & Image Processing Institute,
    %    University of Southern California, Los Angeles, CA
    % ** John C. Mosher, PhD, Biophysics Group,
    %    Los Alamos National Laboratory, Los Alamos, NM
    % ** Sylvain Baillet, PhD, Cognitive Neuroscience & Brain Imaging Laboratory,
    %    CNRS, Hopital de la Salpetriere, Paris, France
    %
    % See BrainStorm website at http://neuroimage.usc.edu for further information.
    %
    % Copyright (c) 2004 BrainStorm by the University of Southern California
    % This software distributed  under the terms of the GNU General Public License
    % as published by the Free Software Foundation. Further details on the GPL
    % license can be found at http://www.gnu.org/copyleft/gpl.html .
    %
    % FOR RESEARCH PURPOSES ONLY. THE SOFTWARE IS PROVIDED "AS IS," AND THE
    % UNIVERSITY OF SOUTHERN CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY
    % WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF
    % MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY
    % LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE.
    %<autoend> ------------------------ 02-Nov-2004 14:32:29 -----------------------

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