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# importdata

## (Toolbox/importdata.m in BrainStorm 2.0 (Alpha))

### Function Synopsis

    varargout = importdata(varargin);

### Help Text

    IMPORTDATA - Case Switchyard for importing data from major MEG and EEG systems
     function varargout = importdata(varargin);
     Import data from the 3 major MEG systems (Neuromag, CTF & BTi) +
      a selection of EEG systems and generic RAW format.
     Routines are generally called by the importdata.fig GUI.
     Switchyard Cases in this file as of 16-April-2004, found manually with dos findstr
        case 'create' % Starts importing data
        case 'RemoveDCOffset' % Remove DC offset from MEG channels
        case 'checkDC' % Mutual incompatibility between checkboxes related to MEG DC removal
        case 'MarkerInfo'
        case 'DisplayMarkerInfo' % Display extended information about selected data sets in message box.
        case 'TrialSelection' % Selection of a subset of trials for data extraction
        case 'MarkerTimeRange' % Are we extracting whole trials or chunks of data about marker(s) ?
        case 'system_select' % Selects the data format to read from
        case 'SeqBlockRW' % Callbcak when cSeqBlockRW checkbox is clicked
        case 'TNativeFormat' % Switch enable on/off for relevant checkboxes when choosing/dropping
        case 'ReadMarkerFile'
        case 'AssignMarkerToDataSet'
        case 'AssignSubjectToDataSet'
        case 'fromRAW'
        case 'OK' % Parameters are all set - import data NOW !
        case 'mutincomp' % Raw/Average

### Cross-Reference Information

This function calls

    bst_color_scheme                   C:\BrainStorm_2001\Toolbox\bst_color_scheme.m
    bst_layout                         C:\BrainStorm_2001\Toolbox\bst_layout.m
    bst_message_window                 C:\BrainStorm_2001\Toolbox\bst_message_window.m
    bst_win_manager                    C:\BrainStorm_2001\Toolbox\bst_win_manager.m
    ds2brainstorm                      C:\BrainStorm_2001\Toolbox\ds2brainstorm.m
    eeg2bs                             C:\BrainStorm_2001\Toolbox\eeg2bs.m
    elpos2bs                           C:\BrainStorm_2001\Toolbox\elpos2bs.m
    extract_ctf_markers                C:\BrainStorm_2001\Toolbox\extract_ctf_markers.m
    find_brainstorm_files              C:\BrainStorm_2001\Toolbox\find_brainstorm_files.m
    findclosest                        C:\BrainStorm_2001\Toolbox\findclosest.m
    get_user_directory                 C:\BrainStorm_2001\Toolbox\get_user_directory.m
    good_channel                       C:\BrainStorm_2001\Toolbox\good_channel.m
    load_raw                           C:\BrainStorm_2001\Toolbox\load_raw.m
    makeuswait                         C:\BrainStorm_2001\Toolbox\makeuswait.m
    mutincomp                          C:\BrainStorm_2001\Toolbox\mutincomp.m
    readmarkerfile_ctf                 C:\BrainStorm_2001\Toolbox\readmarkerfile_ctf.m
    save_fieldnames                    C:\BrainStorm_2001\Toolbox\save_fieldnames.m
    study_editor                       C:\BrainStorm_2001\Toolbox\study_editor.m

This function is called by

    data_manager                       C:\BrainStorm_2001\Toolbox\data_manager.m

### Listing of function C:\BrainStorm_2001\Toolbox\importdata.m

    function varargout = importdata(varargin);
    %IMPORTDATA - Case Switchyard for importing data from major MEG and EEG systems
    % function varargout = importdata(varargin);
    % Import data from the 3 major MEG systems (Neuromag, CTF & BTi) +
    %  a selection of EEG systems and generic RAW format.
    % Routines are generally called by the importdata.fig GUI.
    % Switchyard Cases in this file as of 16-April-2004, found manually with dos findstr
    %    case 'create' % Starts importing data
    %    case 'RemoveDCOffset' % Remove DC offset from MEG channels
    %    case 'checkDC' % Mutual incompatibility between checkboxes related to MEG DC removal
    %    case 'MarkerInfo'
    %    case 'DisplayMarkerInfo' % Display extended information about selected data sets in message box.
    %    case 'TrialSelection' % Selection of a subset of trials for data extraction
    %    case 'MarkerTimeRange' % Are we extracting whole trials or chunks of data about marker(s) ?
    %    case 'system_select' % Selects the data format to read from
    %    case 'SeqBlockRW' % Callbcak when cSeqBlockRW checkbox is clicked
    %    case 'TNativeFormat' % Switch enable on/off for relevant checkboxes when choosing/dropping
    %    case 'ReadMarkerFile'
    %    case 'AssignMarkerToDataSet'
    %    case 'AssignSubjectToDataSet'
    %    case 'fromRAW'
    %    case 'OK' % Parameters are all set - import data NOW !
    %    case 'mutincomp' % Raw/Average

    %<autobegin> ---------------------- 02-Nov-2004 16:14:25 -----------------------
    % --------- Automatically Generated Comments Block Using AUTO_COMMENTS ---------
    %
    % CATEGORY: Data import
    %
    % Alphabetical list of external functions (non-Matlab):
    %   toolbox\bst_color_scheme.m
    %   toolbox\bst_layout.m
    %   toolbox\bst_message_window.m
    %   toolbox\bst_win_manager.m
    %   toolbox\ds2brainstorm.m
    %   toolbox\eeg2bs.m
    %   toolbox\elpos2bs.m
    %   toolbox\extract_ctf_markers.m
    %   toolbox\find_brainstorm_files.m
    %   toolbox\findclosest.m
    %   toolbox\get_user_directory.m
    %   toolbox\good_channel.m
    %   toolbox\importdata.m  NOTE: Routine calls itself explicitly
    %   toolbox\load_raw.m
    %   toolbox\makeuswait.m
    %   toolbox\mutincomp.m
    %   toolbox\readmarkerfile_ctf.m
    %   toolbox\save_fieldnames.m
    %   toolbox\study_editor.m
    %
    % Subfunctions in this file, in order of occurrence in file:
    %   save_sensor_locs(Channel)
    %
    % Group : Preference data and their calls in this file:
    %   Subjects = getpref('BrainStorm','Subjects',[]);
    %   tmp = getpref('BrainStorm','Subjects',[]);
    %
    % Application data and their calls in this file:
    %   'DCOffset'
    %   'DSFolders'
    %   'DataFormats'
    %   'DataInformationTable'
    %   'DataMarkerFileTable'
    %   'DataMarkerIntervalTable'
    %   'DataMarkerTable'
    %   'DataSubjectTable'
    %   'DataTrialSelectionTable'
    %   'Markers'
    %   'System'
    %   'TileType'
    %
    %   setappdata(ImportGUI,'DCOffset',0);
    %   setappdata(ImportGUI,'DCOffset',1);
    %   setappdata(ImportGUI,'DCOffset',DCOffset);
    %   setappdata(ImportGUI,'DataInformationTable',DataInformation);
    %   setappdata(ImportGUI,'DataInformationTable',cell(length(get(handles.RawDataList,'String')),1));
    %   setappdata(ImportGUI,'DataMarkerFileTable',DataMarkerFile);
    %   setappdata(ImportGUI,'DataMarkerIntervalTable',DataMarkerInterval);
    %   setappdata(ImportGUI,'DataMarkerIntervalTable',cell(length(get(handles.RawDataList,'String')),1));
    %   setappdata(ImportGUI,'DataMarkerTable',DataMarker);
    %   setappdata(ImportGUI,'DataSubjectTable',DataSubject);
    %   setappdata(ImportGUI,'DataSubjectTable',cell(length(get(handles.RawDataList,'String')),1));
    %   setappdata(ImportGUI,'DataTrialSelectionTable',DataTrialSelection);
    %   setappdata(ImportGUI,'DataTrialSelectionTable',cell(length(get(handles.RawDataList,'String')),1));
    %   setappdata(ImportGUI,'Markers',Marker);
    %   setappdata(ImportGUI,'System',SYSTEM);
    %   setappdata(ImportGUI,'TileType','T');
    %   setappdata(handles.RawDataList,'DSFolders',DataDir);
    %   setappdata(handles.popupDataFormats,'DataFormats',DataFormats);
    %
    %   DCOffset = getappdata(ImportGUI,'DCOffset');
    %   DataDir = getappdata(handles.RawDataList,'DSFolders');
    %   DataFormats = getappdata(handles.popupDataFormats,'DataFormats');
    %   DataInformation = getappdata(ImportGUI,'DataInformationTable');
    %   DataMarker = getappdata(ImportGUI,'DataMarkerTable');
    %   DataMarkerFile = getappdata(ImportGUI,'DataMarkerFileTable');
    %   DataMarkerInterval = getappdata(ImportGUI,'DataMarkerIntervalTable');
    %   DataSubject = getappdata(ImportGUI,'DataSubjectTable');
    %   DataTrialSelection = getappdata(ImportGUI,'DataTrialSelectionTable');
    %   Marker = getappdata(ImportGUI,'Markers');
    %   SYSTEM = getappdata(ImportGUI,'System');
    %   TASKBAR = getappdata(0,'BrainStormTaskbar');
    %   switch upper(getappdata(ImportGUI,'System'))
    %
    % Figure Files opened by this function:
    %   'generic_listbox_win.fig'
    %   'importdata.fig'
    %
    %   Format of strings below: Type:Style:Tag, "String", CallBack Type and Call
    %   <automatic> callback is <Tag>_Callback by Matlab default
    %
    % Callbacks by figure generic_listbox_win.fig
    %   uicontrol:pushbutton:DONE "Done" uses Callback for subject_editor ImportTriDone
    %
    % Callbacks by figure importdata.fig
    %   uicontextmenu::See more information  "" uses Callback for importdata DisplayMarkerInfo
    %   uicontrol:checkbox:cAllMarkers "" uses Callback for importdata MarkerInfo
    %   uicontrol:checkbox:cCommonMarkers "" uses Callback for importdata MarkerInfo
    %   uicontrol:checkbox:checkDCPreTrig "Based on pretrigger" uses Callback for importdata checkDC
    %   uicontrol:checkbox:checkDCWholeTrial "Based on whole trial" uses Callback for importdata checkDC
    %   uicontrol:checkbox:checkRemoveDC "Remove DC offset" uses Callback for importdata RemoveDCOffset
    %   uicontrol:checkbox:cMarkerTimeRange "" uses Callback for importdata MarkerTimeRange
    %   uicontrol:checkbox:cReadWholeTrials "Read whole trial(s)" uses Callback for
    %     importdata MarkerTimeRange
    %   uicontrol:checkbox:cSeqBlockRW "Sequential Block Read/Write" uses Callback for
    %     importdata SeqBlockRW
    %   uicontrol:checkbox:cSplitTrials "Split trials in multiple data.mat files" uses Callback for
    %     importdata MarkerTimeRange
    %   uicontrol:checkbox:cUseMarkers "Do not use markers" uses Callback for importdata MarkerInfo
    %   uicontrol:checkbox:TNativeFormat "Keep native format" uses Callback for importdata TNativeFormat
    %   uicontrol:edit:eTimeRange """ uses Callback for importdata MarkerTimeRange
    %   uicontrol:edit:eTrialSelection "''" uses Callback for importdata TrialSelection
    %   uicontrol:listbox:LMarkerList "''" uses Callback for importdata AssignMarkerToDataSet
    %   uicontrol:listbox:LSubjects "''" uses Callback for importdata AssignSubjectToDataSet
    %   uicontrol:listbox:RawDataList "''" uses Callback for importdata MarkerInfo
    %   uicontrol:popupmenu:popupDataFormats "Pick-up a data format. . ." uses Callback for
    %     importdata system_select
    %   uicontrol:popupmenu:popupEEGRef "Pick-up a reference for the EEG" uses Callback for
    %     importdata SelectEEGReference
    %   uicontrol:pushbutton:HOK "Import" uses Callback for importdata OK
    %   uicontrol:pushbutton:QPushbutton1 "Close" uses Callback for delete(gcbf)
    %   uicontrol:text:BTrialSelection "Trial Selection" uses Callback for importdata MarkerTimeRange
    %   uicontrol:text:tAllMarkers "Use (all) marker(s) from" uses Callback for importdata MarkerInfo
    %   uicontrol:text:tCommonMarkers "Use marker(s) common" uses Callback for importdata MarkerInfo
    %   uicontrol:text:tMarkerTimeRange "Time Range" uses Callback for importdata MarkerTimeRange
    %
    % At Check-in: $Author: Mosher $  $Revision: 57 $  $Date: 11/02/04 2:35p $
    %
    % This software is part of BrainStorm Toolbox Version 2.0 (Alpha) 02-Nov-2004
    %
    % Principal Investigators and Developers:
    % ** Richard M. Leahy, PhD, Signal & Image Processing Institute,
    %    University of Southern California, Los Angeles, CA
    % ** John C. Mosher, PhD, Biophysics Group,
    %    Los Alamos National Laboratory, Los Alamos, NM
    % ** Sylvain Baillet, PhD, Cognitive Neuroscience & Brain Imaging Laboratory,
    %    CNRS, Hopital de la Salpetriere, Paris, France
    %
    % See BrainStorm website at http://neuroimage.usc.edu for further information.
    %
    % Copyright (c) 2004 BrainStorm by the University of Southern California
    % This software distributed  under the terms of the GNU General Public License
    % as published by the Free Software Foundation. Further details on the GPL
    % license can be found at http://www.gnu.org/copyleft/gpl.html .
    %
    % FOR RESEARCH PURPOSES ONLY. THE SOFTWARE IS PROVIDED "AS IS," AND THE
    % UNIVERSITY OF SOUTHERN CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY
    % WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF
    % MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY
    % LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE.
    %<autoend> ------------------------ 02-Nov-2004 16:14:25 -----------------------

    % /---Script Author--------------------------------------\
    % |                                                      |
    % | *** Sylvain Baillet, Ph.D.                           |
    % | Cognitive Neuroscience & Brain Imaging Laboratory    |
    % | CNRS UPR640 - LENA                                   |
    % | Hopital de la Salpetriere, Paris, France             |
    % | sylvain.baillet@chups.jussieu.fr                     |
    % |                                                      |
    % |  *** John C. Mosher, Ph.D.                           |
    % |  Biophysics Group                                    |
    % |  Los Alamos National Laboratory                      |
    % |  Los Alamos, New Mexico, USA                         |
    % |  mosher@lanl.gov                                     |
    % \------------------------------------------------------/
    %
    % Date of creation: January 1999
    %---------------------------------------------------------------------------------------------------------------------------

    % SB  13-Nov-2001 added peak-detection facility about the marker
    % ............... (useful when importing epileptic spikes with a maximum at zero time)
    % JCM 28-May-2002 simplified create, added bst_color
    % JCM 06-Jun-2002 returns varargout for create, so UIWAIT can be applied
    % SB  22-Jul-2002 Major update
    % JCM 30-Oct-2002 Handled getpref cases if Studies or Subjects are empty
    % JCM 31-Oct-2002 creating default brainstorm folders had file separator bug, used "fullfile"
    %                 to fix
    % SB  07-Nov-2002 Follow up to 22-07-2002 major update:
    %                 Enabled importation of Markers in CTF format
    %                 Systematic use of bst_message_window
    % SB  15-Nov-2002 Added choice for EEG reference from GUI
    %                 Changed layout of GUI - updated callbacks accordingly
    % JCM 20-Nov-2002 Problems with GUI, figure and objects were built in normalized units.
    %                 Altered back to points, resaved, also but movegui function here. Made
    %                 figure invisible at creation, make visible when ready.
    % SB  23-Jan-2003 Now it's possible to keep CTF data in native format (disk space saving feature +
    %                 speeds-up access to data by replacing the F data array
    %                 in the data file by a string specifying the original name of the .ds folder
    %                 Other BrainStorm tools will recognize this format and access the data using appropriate means.
    %                 Need to extend this feature to other accepted native data formats (so far, none but Neuromag - limited
    %                 to Linux environment - untested).
    % JCM 15-Dec-2003 Added "ispc" test around "mkdir" command, since linux user was encountering Status issue
    % JCM 16-Apr-2004 Fixed and upgraded the ASCII load routines into "RAW" routines
    %                 for both binary and ascii loading, upgraded the "Pick a
    %                 format" to be more versatile and editable from within the
    %                 m-file. See cases "create" and "system_select"
    % JCM 28-Apr-2004 Continued building the ASCII importing routines
    % Sb  04-Jun-2004 Replaced DISP calls by BST_MESSAGE_WINDOW
    % JCM 14-Jun-2004 Upgraded raw importing in an attempt to make clearer.
    % JCM 16-Jun-2004 Fixed bug related to 14-Jun with "DataType"
    % DP  24-Sep-2004 Add landmarks support when importing BESA EEG data
    % -----------------------------------------------------

    if isempty(varargin), % no input, assume create
        varargin{1} = 'create';
    end

    Users = get_user_directory;

    switch varargin{1}
        % --------------------------------------------------------------------------------
        case 'create' % Starts importing data
            ImportGUI = openfig('importdata.fig'); % Window for datatype selection
            % note, GUI is invisible initially
            bst_color_scheme(ImportGUI);
            bst_win_manager(ImportGUI,'Other');

            setappdata(ImportGUI,'TileType','T');
            bst_layout('align',ImportGUI,1,1,1);

            % Initialize GUIs related to marker information
            handles = guihandles(ImportGUI);
            set([handles.LMarkerList,handles.eTimeRange,...
                    handles.cSeqBlockRW,handles.cMarkerTimeRange,...
                    handles.tMarkerTimeRange,handles.cReadWholeTrials],'Enable','on')
            set(handles.LMarkerList,'String',{'Read whole data file(s)','without marker information'})

            MarkerTimeInterval = 'Whole Trial';

            set(handles.eTimeRange,'String',MarkerTimeInterval)

            % Build the format popup:
            %   uicontrol:popupmenu:popupDataFormats "Pick-up a data format. . ." uses Callback for
            %     importdata system_select
            % Set the strings and systems for the popup. Systems are keywords:
            %  System belongs to (case insensitive)
            %  {'magnes','ctf','neuromag','neuroscan','egi','prn','raw'}

            DataFormats = struct('String',[],'System',[]);
            DataFormats(1).String = 'Pick-up a data format . . .';
            DataFormats(1).System = []; % comment line, no system

            % Now arrange as desired
            DataFormats(end+1).String = '---- MEG -----';
            DataFormats(end).System = []; % comment line, no system

            DataFormats(end+1).String = '  4-D / BTi (Magnes) <N/A in current version>';
            DataFormats(end).System = 'Magnes'; % keyword, case insensitive

            DataFormats(end+1).String = '  CTF';
            DataFormats(end).System = 'CTF';

            DataFormats(end+1).String = '  Neuromag <N/A in current version>';
            DataFormats(end).System = 'Neuromag';

            DataFormats(end+1).String = '------ EEG ----';
            DataFormats(end).System = [];

            DataFormats(end+1).String = ' BESA <ASCII>';
            DataFormats(end).System = 'BESA';

            DataFormats(end+1).String = ' EGI ';
            DataFormats(end).System = 'EGI';

            DataFormats(end+1).String = ' Neuroscan <binary>';
            DataFormats(end).System = 'Neuroscan';

            DataFormats(end+1).String = '-- RAW (ASCII and binary) --';
            DataFormats(end).System = [];

            DataFormats(end+1).String = ' Raw formats';
            DataFormats(end).System = 'RAW';

            % end of designing format popup, now load
            set(handles.popupDataFormats,'String',{DataFormats.String}); % Available data formats
            setappdata(handles.popupDataFormats,'DataFormats',DataFormats); % store in uicontrol

            set(ImportGUI,'Visible','on')

            if(nargout)
                varargout{1} = ImportGUI;
                varargout{2} = guihandles(ImportGUI);
            end

            % Fill the Subject listbox with available subject's file in current database
            tmp = getpref('BrainStorm','Subjects',[]); % default to empty if not there
            if(~isempty(tmp)),
                tmp = cellstr(char(tmp.Name));
                Subjects = cell(length(tmp)+2,1);
            else
                Subjects = cell(2,1);
            end

            Subjects([1,2]) = {'Default Subject','New Subject'}; %Add Default Subject as first choice in list
            Subjects(3:end) = tmp; % works even if tmp is empty
            handles = guihandles(ImportGUI);
            set(handles.LSubjects,'String',Subjects,'Value',1,'Max',1); % One subject at time : 'Max' set to 1

            bst_message_window({...
                    ' ',...
                    '-> Please select a data native format',...
                    ' '})

            set(ImportGUI,'Visible','On'); % show the user

            % --------------------------------------------------------------------------------
        case 'RemoveDCOffset' % Remove DC offset from MEG channels
            ImportGUI = openfig('importdata.fig','reuse'); % Window for datatype selection
            handles = guihandles(ImportGUI);

            switch(get(handles.checkRemoveDC,'Value'))
                case 1
                    set(handles.checkDCWholeTrial,'Value',1,'enable','on')
                    set(handles.checkDCPreTrig,'Value',0,'enable','on')
                    setappdata(ImportGUI,'DCOffset',1); % Remove DCOffset based on entire trial length
                case 0
                    set([handles.checkDCWholeTrial,handles.checkDCPreTrig],'Value',0,'enable','off')
                    setappdata(ImportGUI,'DCOffset',0); % Default is to not remove DCOffset from MEG data
            end

        case 'checkDC' % Mutual incompatibility between checkboxes related to MEG DC removal
            ImportGUI = openfig('importdata.fig','reuse'); % Window for datatype selection
            handles = guihandles(ImportGUI);
            mutincomp([handles.checkDCWholeTrial,handles.checkDCPreTrig]);

            if get(handles.checkDCWholeTrial,'Value') == 1
                DCOffset = 1;
            else
                DCOffset = 2;
            end

            setappdata(ImportGUI,'DCOffset',DCOffset);

            % --------------------------------------------------------------------------------
        case 'MarkerInfo'
            % Two things are done here :
            % 1) Read data information from raw file and display
            % 2) what do we do with marker(s), if available ?

            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);

            % Marker management ---------------------------------------------

            % First manage mutual incompatibility between relevant checkboxes.
            % Get checkboxes handles
            mutincomp([handles.cUseMarkers, handles.cAllMarkers, handles.cCommonMarkers])

            % Display data and subject information -----------------------------------------
            % if callback object is RawDataList only and if only one dataset is selected

            % Which dataset are selected ?
            iDataSet = get(handles.RawDataList,'Value');
            DataDir = getappdata(handles.RawDataList,'DSFolders');

            % Enable or disable objects associated with Marker info
            switch get(handles.cUseMarkers,'Value')
                case 1 % Do not take Marker info into account
                    set([handles.LMarkerList,handles.eTimeRange,...
                            handles.cSeqBlockRW,handles.cMarkerTimeRange,...
                            handles.tMarkerTimeRange,handles.cReadWholeTrials],'Enable','on')
                    set(handles.LMarkerList,'String',{'Read whole data file(s)','without marker information'},'Max',2,'Value',1)
                    DataMarkerTemplate = struct('MarkerName','','MarkerIndex',[],'Param',[],'NoMarker',[]);
                    [DataMarker(iDataSet)] = deal(DataMarkerTemplate);
                    [DataMarker(iDataSet).NoMarker] = deal(1); % Meaning we're importing without refering to any marker

                    setappdata(ImportGUI,'DataMarkerTable',DataMarker);

                otherwise % use markers
                    set([handles.LMarkerList,handles.eTimeRange,...
                            handles.cSeqBlockRW,handles.cMarkerTimeRange,...
                            handles.tMarkerTimeRange,handles.cReadWholeTrials],'Enable','on')
                    importdata('ReadMarkerFile');
            end

            if isappdata(ImportGUI,'DataSubjectTable')
                DataSubject = getappdata(ImportGUI,'DataSubjectTable');
                if ~isempty([DataSubject{iDataSet}]) % A subject was already assigned to this data set
                    set(handles.LSubjects,'Value',[DataSubject{iDataSet}]);
                else % assume default data set
                    set(handles.LSubjects,'Value',1);
                end
            end

            if ~isappdata(ImportGUI,'DataInformationTable')
                % No appdata containing data information for displayed data sets is available
                setappdata(ImportGUI,'DataInformationTable',cell(length(get(handles.RawDataList,'String')),1));
            end
            % now get it
            DataInformation = getappdata(ImportGUI,'DataInformationTable');

            for k = 1:length(iDataSet) % Fill the information cell for each of the selected data sets
                if isempty(DataInformation{iDataSet(k)})
                    % Read data information from .res4 file
                    % May take a while - ...
                    makeuswait('start')
                    bst_message_window({...
                            ' ',...
                            ' Reading original data information from selected file(s). . .'...
                        })
                    SYSTEM = getappdata(ImportGUI,'System'); % Store it for later use
                    switch(SYSTEM)
                        case 'CTF'
                            % ds2brainstorm with READRES argument set to 2 (read data information only).
                            DataInformation{iDataSet(k)} = ds2brainstorm(fullfile(Users.STUDIES,DataDir{iDataSet(k)}),0,2);
                            makeusewait('stop')
                        otherwise % Cannot read more information about file: return <CBB>
                            makeuswait('stop')
                            return
                    end

                end
                setappdata(ImportGUI,'DataInformationTable',DataInformation);
            end

            if length(get(handles.RawDataList,'Value'))>1 % Multiple data sets selection - need to pick just one
                set(handles.eTimeRange,'String', 'Multiple values')
                set(handles.eTrialSelection,'String', 'Multiple values')
                return
            end

            Data.no_channels = DataInformation{iDataSet}.gSetUp.no_channels;
            Data.sample_rate = DataInformation{iDataSet}.gSetUp.sample_rate;
            Data.no_samples = DataInformation{iDataSet}.gSetUp.no_samples;
            Data.no_trials = DataInformation{iDataSet}.gSetUp.no_trials;
            Data.no_trials_avrgd = DataInformation{iDataSet}.no_trials_avgd;
            Data.preTrigPts = DataInformation{iDataSet}.gSetUp.preTrigPts;
            Data.imegsens = DataInformation{iDataSet}.imegsens;
            Data.ieegsens = DataInformation{iDataSet}.ieegsens;

            % Enable / Disable GUI check boxes that are specific to either EEG or MEG
            if isempty(Data.imegsens)
                set(handles.checkRemoveDC,'enable','off')
            else
                set(handles.checkRemoveDC,'enable','on')
            end

            if isempty(Data.ieegsens)
                set(handles.popupEEGRef,'enable','off')
            else
                set(handles.popupEEGRef,'enable','on')
                set(handles.popupEEGRef,'String',{'Average Reference',DataInformation{iDataSet}.ChannelNames(Data.ieegsens,:)})
            end

            % Original time range
            Time = [-Data.preTrigPts Data.no_samples-Data.preTrigPts]/Data.sample_rate;

            % Update or create MarkerTimeInterval table
            if isappdata(ImportGUI,'DataMarkerIntervalTable') % Already defined
                DataMarkerInterval = getappdata(ImportGUI,'DataMarkerIntervalTable');
                if isempty(DataMarkerInterval{iDataSet})
                    DataMarkerInterval{iDataSet} = num2str(Time);
                end
            else
                % Defined from our current reading of data information
                setappdata(ImportGUI,'DataMarkerIntervalTable',cell(length(get(handles.RawDataList,'String')),1));
                DataMarkerInterval = getappdata(ImportGUI,'DataMarkerIntervalTable');
                DataMarkerInterval{iDataSet} = num2str(Time);
            end
            set(handles.eTimeRange,'String', DataMarkerInterval{iDataSet})
            setappdata(ImportGUI,'DataMarkerIntervalTable',DataMarkerInterval);

            % Trial selection
            % Create a Data table
            if isappdata(ImportGUI,'DataTrialSelectionTable') % Already defined
                DataTrialSelection = getappdata(ImportGUI,'DataTrialSelectionTable');
                if isempty(DataTrialSelection{iDataSet})
                    DataTrialSelection{iDataSet} = sprintf('1:%d',Data.no_trials);
                end
            else
                % Defined from our current reading of data information
                setappdata(ImportGUI,'DataTrialSelectionTable',cell(length(get(handles.RawDataList,'String')),1));
                DataTrialSelection = getappdata(ImportGUI,'DataTrialSelectionTable');
                DataTrialSelection{iDataSet} = sprintf('1:%d',Data.no_trials);
            end
            set(handles.eTrialSelection,'String',DataTrialSelection{iDataSet})

            setappdata(ImportGUI,'DataTrialSelectionTable',DataTrialSelection);

            % --------------------------------------------------------------------------------

        case 'DisplayMarkerInfo' % Display extended information about selected data sets in message box.

            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);

            % Which dataset are selected ?
            iDataSet = get(handles.RawDataList,'Value');
            DataDir = getappdata(handles.RawDataList,'DSFolders');

            if isappdata(ImportGUI,'DataInformationTable')
                DataInformation = getappdata(ImportGUI,'DataInformationTable');
            else
                % No appdata containing data information for displayed data sets is available
                setappdata(ImportGUI,'DataInformationTable',cell(length(get(handles.RawDataList,'String')),1));
                DataInformation = getappdata(ImportGUI,'DataInformationTable');
            end

            % Now set-up fancy display in handles.DataInformation textbox
            Subject = DataInformation{iDataSet}.nfSetUp.nf_subject_id;

            Study.Name = DataInformation{iDataSet}.nfSetUp.nf_run_title;
            Study.DateOfSession = DataInformation{iDataSet}.data_date;

            Data.no_channels = DataInformation{iDataSet}.gSetUp.no_channels;
            Data.sample_rate = DataInformation{iDataSet}.gSetUp.sample_rate;
            Data.no_samples = DataInformation{iDataSet}.gSetUp.no_samples;
            Data.no_trials = DataInformation{iDataSet}.gSetUp.no_trials;
            Data.no_trials_avrgd = DataInformation{iDataSet}.no_trials_avgd;
            Data.preTrigPts = DataInformation{iDataSet}.gSetUp.preTrigPts;
            Data.TrialDuration = DataInformation{iDataSet}.gSetUp.epoch_time/Data.no_trials ;
            Data.imegsens = DataInformation{iDataSet}.imegsens;
            Data.ieegsens = DataInformation{iDataSet}.ieegsens;
            Data.iothersens = DataInformation{iDataSet}.iothersens;

            Display = {...
                    sprintf(' Name of session: %s', Study.Name),...
                    sprintf(' Recorded on: %s', Study.DateOfSession),...
                    ' -------------',....
                    ' ',...
                    sprintf(' Subject: %s',Subject),...
                    ' -------------',....
                    ' ',...
                    sprintf(' Number of channels: '),...
                    sprintf('        MEG   : %d',length(Data.imegsens)),...
                    sprintf('        EEG   : %d ',length(Data.ieegsens)),...
                    sprintf('        Other : %d ',length(Data.iothersens)),...
                    ' -------------',....
                    ' ',...
                    sprintf(' %d trials from %d averaged raw trials',Data.no_trials,Data.no_trials_avrgd),...
                    sprintf(' Trial duration: %gs / with %gs pretrigger',  Data.TrialDuration,Data.preTrigPts/Data.sample_rate)...
                };

            msgbox(Display);

            % --------------------------------------------------------------------------------

        case 'TrialSelection' % Selection of a subset of trials for data extraction
            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);

            iDataSet = get(handles.RawDataList,'Value'); % Selected data sets

            if get(handles.cAllMarkers,'Value') == 0 % Do not use markers
                % Trial selection
                % Use a Data table
                if isappdata(ImportGUI,'DataTrialSelectionTable') % Already defined
                    DataTrialSelection = getappdata(ImportGUI,'DataTrialSelectionTable');
                else % Create table
                    setappdata(ImportGUI,'DataTrialSelectionTable',cell(length(get(handles.RawDataList,'String')),1));
                    DataTrialSelection = getappdata(ImportGUI,'DataTrialSelectionTable');
                end
                % Get Trial selection from editable textbox in GUI
                DataTrialSelection{iDataSet} = get(handles.eTrialSelection,'String');

                setappdata(ImportGUI,'DataTrialSelectionTable',DataTrialSelection);

            else % Use Markers - select a subset of marker events

                iMarker = get(handles.LMarkerList,'Value'); % What's the selected Marker ?
                if ~isempty(iMarker(iMarker == 1)) % No Marker Selected
                    return
                else
                    iMarker = iMarker - 1;

                    % Get the Marker information
                    Marker = getappdata(ImportGUI,'Markers');

                    %Which datasets are selected ?
                    DataDir = getappdata(handles.RawDataList,'DSFolders');
                    iDataSets = get(handles.RawDataList,'Value');

                    % Now store all the extraction information in a table
                    % Get MarkerFile information for each dataset
                    if length(iMarker) == 1 & length(iDataSets) == 1 % Display trial information
                        try
                            TrialSamples = str2num(get(handles.eTrialSelection,'String')); % Subset of selected trials for current Marker.
                        catch
                            errordlg(sprintf('Unvalid String: %s', get(handles.eTrialSelection,'String')))
                        end

                    elseif length(iMarker) > 1 | length(iDataSets) > 1 % Multiple values
                        set(handles.eTrialSelection,'String','Multiple Values')
                        return
                    end

                    for imark = 1:length(iMarker)  % For each Marker, save sample information
                        for ids = iDataSets
                            idsInMarker = find(strcmp(cellstr(Marker(iMarker(imark)).ds),DataDir{ids})); % Index of ds file in Marker structure
                            if ~isempty(idsInMarker)
                                % Store information only if current Marker can be found in selected ds
                                DataMarker(ids).NoMarker = 0;
                                DataMarker(ids).MarkerIndex(imark) = iMarker(imark);
                                DataMarker(ids).MarkerName{imark} = Marker(iMarker(imark)).name;
                                DataMarker(ids).Param(imark).trial_time =  Marker(iMarker(imark)).trial_time{idsInMarker}(TrialSamples,:);
                                DataMarker(ids).Param(imark).no_samples = size(DataMarker(ids).Param(imark).trial_time,1);
                            end
                        end
                    end
                end

                setappdata(ImportGUI,'DataMarkerTable',DataMarker);

            end

            % --------------------------------------------------------------------------------
        case 'MarkerTimeRange' % Are we extracting whole trials or chunks of data about marker(s) ?
            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);

            % First manage mutual incompatibility between relevant checkboxes.
            mutincomp([handles.cReadWholeTrials,handles.cMarkerTimeRange]);

            % Now assign Marker interval information to selected datasets for future importation
            if isappdata(ImportGUI,'DataMarkerIntervalTable')
                DataMarkerInterval = getappdata(ImportGUI,'DataMarkerIntervalTable');
            else
                setappdata(ImportGUI,'DataMarkerIntervalTable',cell(length(get(handles.RawDataList,'String')),1));
                DataMarkerInterval = getappdata(ImportGUI,'DataMarkerIntervalTable');
            end

            %Which datasets are selected ?
            iDataSets = get(handles.RawDataList,'Value');

            [DataMarkerInterval(iDataSets)] = deal({get(handles.eTimeRange,'String')});

            setappdata(ImportGUI,'DataMarkerIntervalTable',DataMarkerInterval);

            % --------------------------------------------------------------------------------
        case 'system_select' % Selects the data format to read from

            %   uicontrol:popupmenu:popupDataFormats "Pick-up a data format. . ." uses Callback for
            %     importdata system_select

            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);

            % Initialize subjects and marker assignation
            if isappdata(ImportGUI,'DataMarkerTable')
                rmappdata(ImportGUI,'DataMarkerTable');
            end
            if isappdata(ImportGUI,'DataSubjectTable')
                rmappdata(ImportGUI,'DataSubjectTable');
            end

            % Get the system from the popup string
            % stored in uicontrol at time of creation
            DataFormats = getappdata(handles.popupDataFormats,'DataFormats');
            % Identification of system type by which popup selected
            SYSTEM = DataFormats(get(handles.popupDataFormats,'Value')).System;

            if isempty(SYSTEM),
                % a no-op comment line
                set(handles.popupDataFormats,'value',1); % back to the beginning
                return % done
            end

            % now handle the cases that are not ready yet
            switch lower(SYSTEM)
                % special case handling
                case {'magnes','neuroscan'}
                    set(handles.RawDataList,'String',...
                        {...
                            sprintf('No automatic loading of %s data sets yet.', SYSTEM) ,...
                            'Please export your data into "raw" formatted files.',...
                            'Check the BrainStorm web site for latest news',...
                            'about available formats.'...
                        })
                    set(handles.popupDataFormats,'Value',1)
                    return
                case 'raw'
                    % special handling for now
                    importdata('fromRAW')
                    set(handles.popupDataFormats,'Value',1) % reset handle
                    return
            end

            bst_message_window('wrap','Looking for data sets in native format in current database...')
            makeuswait('start')

            setappdata(ImportGUI,'System',SYSTEM); % Store it for later use
            % Look for data files from this system in current database
            % Look for CTF format in current study folder
            [DataDir,DataPopup,Leader] = find_brainstorm_files(SYSTEM,Users.STUDIES);
            if isempty(DataPopup) % If data sets in current study folder

                % Listbox display

                set(handles.RawDataList,'String',...
                    {...
                        sprintf('No %s data sets in current study folder:',SYSTEM),...
                        sprintf('%s ', Users.STUDIES),...
                    })
                set(handles.popupDataFormats,'Value',1)
                makeuswait('stop')
                return

            else

                set(handles.RawDataList,'String',cellstr(DataPopup),'Min',1,'Max',length(DataDir)+1) % Listbox display
                setappdata(handles.RawDataList,'DSFolders',DataDir); % Store for later usage
                importdata MarkerInfo % jcm 19 august 2003 update the automatic selection of the first element

            end

            switch get(handles.cUseMarkers,'Value')
                case 1 % Do not take Marker info into account
                otherwise
                    % Find possible associated MarkerFile.
                    importdata('ReadMarkerFile');
            end

            makeuswait('Stop')

            bst_message_window('wrap',{...
                    '-> Done',...
                    'You may now select one or several data sets to import'...
                })

            %------------------------------------------------------------------------------------
        case 'SeqBlockRW' % Callbcak when cSeqBlockRW checkbox is clicked
            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);

            % if SeqBlockRW is requested
            % then splitrials in multiple files is enforced
            % (consistent with the way trials are read sequentially and therefore saved likewise)

            if get(handles.cSeqBlockRW,'Value')
                set(handles.cSplitTrials,'Value',1,'Enable','off')
            else
                set(handles.cSplitTrials,'Value',1,'Enable','on')
            end

            %------------------------------------------------------------------------------------
        case 'TNativeFormat' % Switch enable on/off for relevant checkboxes when choosing/dropping
            % native data file format.

            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);
            if get(handles.TNativeFormat,'Value')
                set([handles.cAllMarkers,handles.cCommonMarkers,handles.cUseMarkers],'Enable','off')
            else
                set([handles.cAllMarkers,handles.cCommonMarkers,handles.cUseMarkers],'Enable','off')
            end

            %------------------------------------------------------------------------------------
        case 'ReadMarkerFile'

            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);
            cd(Users.STUDIES);

            SYSTEM = getappdata(ImportGUI,'System');

            if isempty(SYSTEM), return, end % System still undefined, return

            switch(SYSTEM)

                case 'CTF'

                    DataFiles = get(handles.RawDataList, 'Value');         % Which .ds has been selected ?
                    DataDir = getappdata(handles.RawDataList,'DSFolders');
                    set(handles.LMarkerList,'Value',1)
                    set(handles.LSubjects,'Value',1)

                    DataDir = DataDir(DataFiles); % Relative parth to selected data sets.

                    % How many files were selected ?
                    nfiles = length(DataDir);

                    % Now fill-out the Marker structure array.
                    % .name : name of the marker
                    % .ds : a cell array of the DS folders where this marker was found
                    % .trial_time : a cell array of trial_time arrays indicating for trial, the latency from trial time zero
                    % where to find the marker; one cell per DS folder.
                    % .nsamples : total number of occurences of this marker
                    Marker = [];%struct('name','','ds','','trial_time',[],'nsamples',[]);
                    DSMarker.names = [];

                    for k = 1:nfiles
                        % Look for a Marker file in current .ds folder
                        [DSMarker.names,DSMarker.nsamples ,DSMarker.trial_time] = readmarkerfile_ctf(DataDir{k});
                        while isempty(DSMarker.names) & k < nfiles+1 % Look for a MarkerFile in either of the selected data sets
                            k = k+1;
                            if k > nfiles
                                k = nfiles;
                                break
                            end
                            [DSMarker.names,DSMarker.nsamples ,DSMarker.trial_time] = readmarkerfile_ctf(DataDir{k});

                        end

                        % Store Marker information for each Dataset (for later use in data extraction : case 'OK')
                        if isappdata(ImportGUI,'DataMarkerFileTable')
                            DataMarkerFile = getappdata(ImportGUI,'DataMarkerFileTable');
                        else
                            DataMarkerFile = cell(length(get(handles.RawDataList,'String')),1);
                        end
                        DataMarkerFile{k} = DSMarker;
                        setappdata(ImportGUI,'DataMarkerFileTable',DataMarkerFile);
                        % ----------------------------

                        if isempty(DSMarker.names) % No markerfile found: get out of here !
                            break
                        end

                        % DSMarker is a structure filled with Marker information from current data set DataDir{k}

                        % Now fill out a few variables for future (nice) display of Marker information in GUI
                        MarkerNames{k} = deblank(char(DSMarker.names)); % Pad all names to same character length
                        MarkerNSamples{k} = deblank(char(int2str(DSMarker.nsamples)));

                        % Start filling Marker structure
                        for kk = 1:length(DSMarker.names) % For each Marker found in first data set
                            Marker(end+1).name = DSMarker.names{kk};
                            j = length(Marker);
                            Marker(j).ds = DataDir{k};
                            Marker(j).trial_time = DSMarker.trial_time{kk};
                            Marker(j).nsamples =  DSMarker.nsamples(kk);
                        end
                        % Now handles Marker with same names
                        % Keep all markers available - just detect duplicates in other .ds files
                        % and refresh the corresponding array entry of Marker
                        [UniqueMarkers iUniqueMarkers jUniqueMarkers]  ...
                            = unique(cellstr(char(Marker.name))) ;
                        tmp = Marker;
                        for kk = 1:length(UniqueMarkers) % Update Marker field values

                            Marker(kk).name = UniqueMarkers{kk};
                            iMarkers = find(strcmp(cellstr(char(tmp.name)),UniqueMarkers{kk})); % Index of Markers with names UniqueMarkers{kk}
                            Marker(kk).nsamples = sum([tmp(iMarkers).nsamples]);
                            Marker(kk).ds = char(tmp(iMarkers).ds);
                            Marker(kk).trial_time = cell(1,length(iMarkers));
                            for imark = 1:length(iMarkers)
                                if ~iscell(tmp(iMarkers(imark)).trial_time)
                                    Marker(kk).trial_time{imark} = tmp(iMarkers(imark)).trial_time;
                                else
                                    Marker(kk).trial_time{imark} = tmp(iMarkers(imark)).trial_time{:}; % For first selected ds
                                end
                            end
                        end

                        Marker = Marker(1:length(iUniqueMarkers));

                    end

                    if isempty(Marker)
                        bst_message_window({...
                                ' ',...
                                'No MarkerFile found for selected data set(s)',...
                                (char(DataDir)),...
                                ' '...
                            });
                        return
                    end
                    iremove = [];
                    if nfiles > 1 & get(handles.cCommonMarkers,'Value') % Only keep markers present in ALL data sets
                        for kk = 1:length(Marker)
                            if size(Marker(kk).ds,1) ~= nfiles
                                % This marker does not belong to all data sets - remove it from final selection
                                iremove = [iremove,kk];
                            end
                        end
                        if ~isempty(iremove)
                            Marker = Marker(setdiff(1:length(Marker),iremove));
                        end

                    end

                    if isempty(Marker)
                        bst_message_window({...
                                'No MarkerFile found for selected data set(s)',...
                                DataDir{k}...
                            });
                        return
                    end

                    fmtstr = sprintf('%%-%ds | %%-%ds trials',...
                        size(MarkerNames,2),size(MarkerNSamples,2)); % Template string

                    % Now get prepared for fancy listbox display
                    % first create proper character arrays fro Names and NSamples
                    MarkerNames = char(Marker.name);
                    MarkerNSamples = char(cellstr(int2str([Marker.nsamples]')));

                    clear MarkerDisplay
                    MarkerDisplay{1} = 'No Marker Selected'; % Default choice - useful when removing a data set from selection
                    for k = 1:size(MarkerNames,1)
                        MarkerDisplay{k+1} = sprintf(fmtstr,...
                            strrep(MarkerNames(k,:),' ','.'),strrep(MarkerNSamples(k,:),' ','.'));
                    end

                    set(handles.LMarkerList,'String',MarkerDisplay,'enable','on','Max',length(MarkerDisplay));
                    setappdata(ImportGUI,'Markers',Marker); % Store marker information

                    % Update display corresponding to selected markers and subjects for the selected data sets
                    if get(handles.cUseMarkers,'Value') == 0 & length(DataFiles) == 1 % Only one data set is selected
                        if isappdata(ImportGUI,'DataMarkerTable')
                            DataMarker = getappdata(ImportGUI,'DataMarkerTable');
                            try % if a Marker was selected
                                if ~isempty(DataMarker(DataFiles).MarkerName) %~isempty([DataMarker{DataFiles}])
                                    imark = [];
                                    for kk = 1:length([DataMarker(DataFiles).MarkerName]) % Find listbox values of current marker display
                                        imark = [imark,find(strcmp( cellstr(char(Marker(:).name)), DataMarker(DataFiles).MarkerName{kk}))];
                                    end
                                    set(handles.LMarkerList,'Value',imark+1)
                                end
                            end
                        end
                    end

                otherwise
                    bst_message_window('Unsupported data type to read marker information')
                    return
            end

            %------------------------------------------------------------------------------------
        case 'AssignMarkerToDataSet'
            % When marker information is taken into account
            % we assign here the markers we want to consider for importation
            % for the selected datasets.

            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);

            if get(handles.cUseMarkers,'Value') % Do not use markers: return
                return
            end

            %Which datasets are selected ?
            iDataSets = get(handles.RawDataList,'Value');

            % Get the table of correspondence
            % between data sets and selected markers
            % If does not exist, create one
            % Create pr Update the Data <-> Marker assignement table
            % An array of structures
            % Each structure will specify the Markers to be extracted and the associated information
            % Field description (for each marker):
            % .NoMarker    : set to 1 means that data importation is done with reference to trial onset, and not to any Marker
            % .MarkerIndex : Index of the selected Markers in .ds MarkerFile
            % .MarkerName   : Marker names foundin MarkerFile
            %%%%%%%%%%%%%%%%%%%%%% .TimeRange    : Time range of extraction about Marker latency
            % .Param(imark).trial_time   : Array of trial number x latencies for Marker imark
            % .Param(imark).no_samples   : Number of occurences of Marker         "
            DataMarkerTemplate = struct('MarkerName','','MarkerIndex',[],'Param',[],'NoMarker',[]);
            if isappdata(ImportGUI,'DataMarkerTable')
                DataMarker = getappdata(ImportGUI,'DataMarkerTable');
                % Reinitialize DataMarker for selected Datasets (Marker selection has porbably changed between tow calls to this
                % switch)
                %DataMarker(iDataSets) = [];
                DataMarker(iDataSets) = deal(DataMarkerTemplate);
            else
                [DataMarker(1:length(get(handles.RawDataList,'String')))] = deal(DataMarkerTemplate);
                setappdata(ImportGUI,'DataMarkerTable',DataMarker);
            end

            % Get the Marker information
            Marker = getappdata(ImportGUI,'Markers');

            % Which is the time range for data extraction about the selected markers
            if isappdata(ImportGUI,'DataMarkerIntervalTable')
                DataMarkerInterval = getappdata(ImportGUI,'DataMarkerIntervalTable');
            end

            DataDir = get(handles.RawDataList,'String');

            % Which is the current subject ?
            iMarker = get(handles.LMarkerList,'Value');
            if ~isempty(iMarker(iMarker == 1)) % No Marker Selected
                % Remove dataset from selection
                DataMarker(iDataSets) = deal(DataMarkerTemplate);
                set(handles.LMarkerList,'Value',1)
            else
                iMarker = iMarker - 1;

                % Now store all the extraction information in a table
                % Get MarkerFile information for each dataset
                if length(iMarker) == 1 & length(iDataSets) == 1 % Display trial information
                    set(handles.eTrialSelection,'String',sprintf('%d:%d',1,size( Marker(iMarker).trial_time{1},1)))
                elseif length(iMarker) > 1 | length(iDataSets) > 1 % Multiple values
                    set(handles.eTrialSelection,'String','Multiple Values')
                end

                for imark = 1:length(iMarker)  % For each Marker, save sample information
                    for ids = iDataSets
                        idsInMarker = find(strcmp(cellstr(Marker(iMarker(imark)).ds),DataDir{ids})); % Index of ds file in Marker structure
                        if ~isempty(idsInMarker)
                            % Store information only if current Marker can be found in selected ds
                            DataMarker(ids).NoMarker = 0;
                            DataMarker(ids).MarkerIndex(imark) = iMarker(imark);
                            DataMarker(ids).MarkerName{imark} = Marker(iMarker(imark)).name;
                            DataMarker(ids).Param(imark).trial_time =  Marker(iMarker(imark)).trial_time{idsInMarker};
                            DataMarker(ids).Param(imark).no_samples = size(DataMarker(ids).Param(imark).trial_time,1);
                        end
                    end
                end
            end

            setappdata(ImportGUI,'DataMarkerTable',DataMarker);

            %------------------------------------------------------------------------------------
        case 'AssignSubjectToDataSet'
            % When importing data, a subject needs to be assigned to all imported data sets
            % prior to be included in to the BrainStorm database.
            % This is achieved here by selecting datasets in the RawDataList and then assigning
            % a subject to them by selecting a subject from the database in LSubjects.
            % Subject can either be an existing one in the database, Default (with assumed default anatomy)
            % or New, therefore creating automatically a new Subject folder and file in the SUBJECTS folder.

            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);

            % Get the table of correspondence
            % between data sets and subjects
            % If does not exist, create one
            if isappdata(ImportGUI,'DataSubjectTable')
                DataSubject = getappdata(ImportGUI,'DataSubjectTable');
            else
                setappdata(ImportGUI,'DataSubjectTable',cell(length(get(handles.RawDataList,'String')),1));
                DataSubject = getappdata(ImportGUI,'DataSubjectTable');
            end

            %Which datasets are selected ?
            iDataSets = get(handles.RawDataList,'Value');

            % Which is the current subject ?
            iSubject = get(handles.LSubjects,'Value');

            % First remove previous subject that was selected for these datasets.
            %DataSubject(iDataSets) = deal({[]});
            DataSubject(iDataSets) = deal({iSubject});

            setappdata(ImportGUI,'DataSubjectTable',DataSubject);

            %------------------------------------------------------------------------------------

            % case 'fromNEUROMAG'
            %     open('importparam.fig');
            %     set(gcf,'Userdata','neuromag')
            %     delete(gcbf)
            %     system_name = findobj(gcf,'tag','system_name');
            %     set(system_name,'String','Neuromag Data Format')
            %     handles = findobj(gcf,'callback','importdata mutincomp2');
            %     set(handles,'Visible','off')
            %
            %     open('listbox_win.fig')
            %     LISTBOX_WIN = findobj(0,'Tag','listbox_win');
            %     listboxx = findobj(LISTBOX_WIN,'Tag','listbox');
            %
            %
            %     [DataDir,DataPopup] = find_neuromag_data;
            %     if isempty(DataPopup)
            %         errordlg('No Neuromag files found in the current studies directory')
            %         return
            %     end
            %
            %     set(listboxx,'String',DataPopup,'Userdata',DataDir,'Min',1,'Max',length(DataPopup))
            %
            %

            % --------------- ROUTINE TO LOAD RAW CHANNEL and DATA -------------------
        case 'fromRAW'

            % -------------- ASSIGN A BRAINSTORM STUDY TO THIS LOAD ------------------

            User = get_user_directory;
            cd(User.STUDIES)

            [StudyFile,StudyPath] = uigetfile(['*_brainstormstudy.mat'], ...
                'Please select the related BrainStorm Study File (cancel to build)');
            if StudyFile == 0,
                % Cancelled, let build a study first
                fig = study_editor('create');
                uiwait(fig);
                [StudyFile,StudyPath] = uigetfile(['*_brainstormstudy.mat'], ...
                    'Please select the related BrainStorm Study File (cancel to quit)');
                if StudyFile == 0,
                    % user is still cancelling out
                    return
                end
            end
            cd(StudyPath)

            StudyNameRoot = findstr(StudyFile,'brainstormstudy.mat');
            if isempty(StudyNameRoot)
                errordlg('Study file name should be of the form ''*brainstormstudy.mat''')
                return
            end
            StudyNameRoot = StudyFile(1:StudyNameRoot-1);
            if strcmp(StudyNameRoot(end),'_'), % still have an underscore at end
                StudyNameRoot(end) = [];
            end

            % ---------------- GET THE CHANNEL LOCATION FILE NAME --------------------
            [ChannelFile, ChannelPath] = uigetfile({'*.txt;*.raw', 'All RAW Files(*.txt, *.raw)'},...
                'File of Sensor Locations (x,y,z) in Subject Coordinate System');
            if ChannelFile == 0, % cancelled
                return,
            end
            cd(ChannelPath) % move to that directory, assume other files are there too.

            ans = questdlg('Which Coordinate System Convention?', 'Subject Coordinate System',...
                'CTF / Magnes','Neuromag','CTF / Magnes');
            switch ans
                case 'CTF / Magnes'
                    SYSTEM = 'CTF'; % keyword
                case 'Neuromag'
                    SYSTEM = 'NEUROMAG'; % keyword
            end

            % ------------------ READ THE CHANNEL LOCATION DATA ----------------------
            Channels_read = load_raw(ChannelFile,ChannelPath);

            NUM_CHANNELS = size(Channels_read,1); % number of channels to process

            % --------------- What type data is this? ------------------
            % The data can be EEG, MEG, or mixed array as read from a file
            DataType = questdlg(...
                'Are all channels identical, or should we read a file of types?',...
                'Homogeneous or Mixed Array Type (See Help -> Generic Data Loading)','MEG only','EEG only','Mixed: Read File','EEG only');
            TypeRead = cell(NUM_CHANNELS,1); % initialize as column vector

            switch DataType
                case 'Mixed: Read File'
                    % --------------- Read the Data Type File ------------------
                    [TypeFile, TypePath] = uigetfile({'*.txt', 'All Text Files(*.txt)'},...
                        'File of Sensor Types (lines of ASCII)');
                    if TypeFile == 0, % cancelled
                        return,
                    end
                    cd(TypePath)
                    fid = fopen(TypeFile,'rt');
                    for i = 1:NUM_CHANNELS,
                        TypeRead{i} = fgetl(fid); % no error handling on read
                        % now ensure it is a valid keyword
                        switch TypeRead{i}
                            case {'MEG','EEG','MEG REF','EEG REF','OTHER'}
                                % fine
                            otherwise
                                bst_message_window(sprintf(...
                                    'Converting sensor %.0f with string "%s" to "OTHER"',i,TypeRead{i}));
                                TypeRead{i} = 'OTHER';
                        end % switch
                    end
                    fclose(fid);

                case 'MEG only'
                    % all one type of sensor
                    [TypeRead{1:NUM_CHANNELS}] = deal('MEG'); % homogeneous array
                case 'EEG only'
                    [TypeRead{1:NUM_CHANNELS}] = deal('EEG'); % homogeneous array
            end % switch Dataype

            % Now we have all channel locations initially read, and we know what each
            % channel type is. Continuing loading more information

            % ----------------- GET THE FILENAMES FROM THE USER --------------------
            % CBB: Auto detect the names, but for now we're much more manual

            % ---------------- GET CHANNEL ORIENTATION FILE NAME -------------------
            [OrientFile, OrientPath] = uigetfile({'*.txt;*.raw', 'All RAW Files(*.txt, *.raw)'},...
                'File of Sensor Orientations (cos x, cos y, cos z) ("Cancel" if none)');
            if OrientFile == 0, % cancelled
                OrientFile = []; % none
                OrientPath = [];
            end

            % ---------------- GET CHANNEL LABELS FILE NAME, IF ANY ----------------
            [LabelFile, LabelPath] = uigetfile({'*.txt', 'All Text Files(*.txt)'},...
                'Optional File of Sensor Labels (text strings) ("Cancel" for default labels)');
            if LabelFile == 0, % cancelled, therefore default labels
                LabelFile = [];
                LabelPath = [];
            end

            % ---------- GET REFERENCE CHANNEL WEIGHTS FILE NAME, IF ANY ---------
            [ReferenceFile, ReferencePath] = uigetfile({'*.txt;*.raw', 'All RAW Files(*.txt, *.raw)'},...
                'Optional File of Reference Weights ("Cancel" if none)');
            if ReferenceFile == 0, % cancelled, therefore default labels
                bst_message_window('No reference weights loaded');
                ReferenceFile = [];
                ReferencePath = [];
            end

            % ---------- GET DATA FILE NAME ---------------
            [DataFile, DataPath] = uigetfile({'*.txt;*.raw', 'All RAW Files(*.txt, *.raw)'},...
                'File of Spatio-temporal Data Matrix ("Cancel" to quit)');
            if DataFile == 0,
                return,
            end

            % -------- GET DATA TIME FILE NAME, IF ANY ---------
            [TimeFile, TimePath] = uigetfile({'*.txt;*.raw', 'All RAW Files(*.txt, *.raw)'},...
                'Optional File of Time Values ("Cancel" for default time assignment)');
            if TimeFile == 0,
                bst_message_window('Will use default times of one millisecond per sample');
                TimeFile = [];
                TimePath = [];
            end

            % --------- NOW LOAD THESE DATA ---------------------
            % we have the filenames (user did not cancel out), now get data

            % ---------- READ THE CHANNEL ORIENTATION DATA ----------
            Orient_read = load_raw(OrientFile, OrientPath); % will return empty if no such data

            % convert the read in channels into our structure
            NUM_CHANNELS = size(Channels_read,1);

            % ----------- READ THE CHANNEL LABELS, IF ANY ----------------
            LabelsRead = cell(NUM_CHANNELS,1);
            if ~isempty(LabelFile),
                cd(LabelPath)
                fid = fopen(LabelFile,'rt');
                for i = 1:NUM_CHANNELS,
                    LabelsRead{i} = fgetl(fid); % no error handling
                end
            else
                % user gave no channels, form defaults
                for i = 1:NUM_CHANNELS,
                    LabelsRead{i} = sprintf('%s Channel #%03.0f',TypeRead{i},i);
                end
            end

            % --------------------- READ THE REFERENCE WEIGHTS, IF ANY ---------

            Reference_Weights = load_raw(ReferenceFile, ReferencePath); % may return empty

            % --------- LOAD THE SPATIO-TEMPORAL DATA  ------------------

            Data = struct('F',[],'Time',[],'ChannelFlag',[],'NoiseCov',[],'SourceCov',[],...
                'Projector',[],'Comment',[]);

            Data.F = load_raw(DataFile,DataPath);

            % now figure out if it needs transposing
            % CBB, but if we make it automatic, how do we catch square matrices or
            % matrice where they forgot one or two channels.
            [mF,nF] = size(Data.F);
            bst_message_window('wrap',sprintf('You have loaded %.0f Sensor Channels, and you have loaded',NUM_CHANNELS))
            bst_message_window('wrap',sprintf('a data matrix that is %.0f rows by %.0f columns.', mF, nF));
            bst_message_window('wrap',sprintf('The number of rows in the data matrix must be equivalent to the number of channels.'));

            if mF == NUM_CHANNELS,
                % probably don't need to transpose
                FlipData = questdlg(sprintf('Do we need to transpose this %.0f by %.0f data matrix (probably NOT!)?',mF,nF),...
                    sprintf('You have %.0f channels of data',NUM_CHANNELS),'Yes','No','No');
            else
                % probably do need to transpose
                FlipData = questdlg(sprintf('Do we need to transpose this %.0f by %.0f data matrix (probably YES!)?',mF,nF),...
                    sprintf('You have %.0f channels of data',NUM_CHANNELS),'Yes','No','Yes');
            end

            switch FlipData
                case 'Yes'
                    Data.F = Data.F';
                case 'No'
                    % do nothing
            end
            [mF,nF] = size(Data.F); % final size, spatio x temporal

            Data.Time = load_raw(TimeFile,TimePath);

            if isempty(Data.Time),
                % user did not give a time series, will synthesize
                Data.Time = [0:(nF-1)]/(nF-1) * .001; % one millisecond data
            end

            % Could be better, CBB, but for now apply this simple test
            if NUM_CHANNELS ~= mF,
                bst_message_window('wrap',sprintf('You have loaded a total %.0f Sensor channels, including possible references, ',NUM_CHANNELS))
                bst_message_window('wrap',sprintf('BUT, you have loaded %.0f rows of data.',mF));
                bst_message_window('wrap','The number of rows in the spatial temporal data matrix must match the number of channels.');
                bst_message_window('wrap','Please add/subtract in rows in the data matrix, including reference data, even if it is a row of zeros.')
                bst_message_window('wrap','See also HELP_DATA_CHANNEL, HELP_DATA_RAW, HELP_DATA_DATA');
                return
            end

            % ------------------- BUILD THE CHANNEL STRUCTURE ----------------------
            [Channel(1:NUM_CHANNELS)] = deal(struct('Loc',[],'Orient',[],'Weight',[],'Type',[],...
                'Comment',[]));

            for i = 1:NUM_CHANNELS,

                % ignore any NaNs on each line
                ndx = find(~isnan(Channels_read(i,:))); % each column is a sensor

                Channel(i).Loc = reshape(Channels_read(i,ndx),3,length(ndx)/3);
                if isempty(Orient_read), % no orientation file, should be EEG data
                    Channel(i).Orient = []; % EEG
                else
                    Channel(i).Orient = reshape(Orient_read(i,ndx),3,length(ndx)/3);
                end

                switch length(ndx)/3
                    case 0
                        % all NaN
                        Channel(i).Weight = [];
                    case 1
                        Channel(i).Weight = 1;
                    case 2
                        Channel(i).Weight = [1 -1]; % first order gradiometer
                    case 3
                        Channel(i).Weight = [1 -2 1]; % second order gradiometer
                    otherwise
                        error('Sorry, cannot handle higher than second order at this time.')
                end

                Channel(i).Type = TypeRead{i}; % 'MEG', 'EEG'
                Channel(i).Comment = '';
                Channel(i).Name = LabelsRead{i};

            end % building channel structure

            % ---------------- HANDLE THE REFERENCE CHANNEL CASES --------------------

            % Initialize
            EEGndx = find(strcmp({Channel.Type},'EEG'));
            MEGndx = find(strcmp({Channel.Type},'MEG'));
            EEGRefndx = find(strcmp({Channel.Type},'EEG REF'));
            MEGRefndx = find(strcmp({Channel.Type},'MEG REF'));

            if ~isempty(EEGndx),
                % there are EEG sensors, so are there EEG references?
                bst_message_window('wrap',sprintf(...
                    'You have loaded a total %.0f EEG channels with %.0f channels denoted as reference channels',...
                    length(EEGndx),length(EEGRefndx)));

                if ~isempty(EEGRefndx),
                    % we have EEG reference channels loaded
                    if length(EEGRefndx) > 1,
                        bst_message_window('wrap',sprintf('You have loaded more than one EEG reference electrode.'));
                        bst_message_window('wrap','Please edit your input to have only one EEG reference electrode.');
                    end
                else
                    % we have no EEG reference channels loaded
                    [Channel(EEGndx).Comment] = deal('AVERAGE REF');
                    bst_message_window('wrap','You loaded no reference channels. Assuming Average Reference and averaging your data')
                    Data.F = Data.F - repmat( mean(Data.F),NUM_CHANNELS,1);
                end
            end % if the are EEG sensors

            if ~isempty(MEGndx),
                % there are MEG sensors, are there any MEG reference channels?
                bst_message_window('wrap',sprintf(...
                    'You have loaded a total %.0f MEG channels with %.0f channels denoted as reference channels',...
                    length(MEGndx),length(MEGRefndx)));

                if ~isempty(MEGRefndx),
                    % we have MEG reference channels loaded as well
                    Channel(MEGndx(1)).Comment = Reference_Weights;

                else
                    % no MEG reference channels have been loaded
                end
            end % if there are MEG sensors

            Data.ChannelFlag = ones(1,length(Channel)); % all channels assumed initially good

            % ---- NEED TO HANDLE REFERENCE CHANNELS LABELS --------

            Data.NoiseCov = []; % unused for now
            Data.SourceCov = []; % unused for now
            Data.Projector = []; % unused for now
            Data.Comment = 'Imported RAW Data';
            Data.Device = SYSTEM;
            Data.System = SYSTEM;

            % --------------------------- Save the data ------------------------------

            cd(StudyPath) % ensure we are in the right directory

            chan_bst_file = [StudyNameRoot,'_channel'];

            save(chan_bst_file,'Channel');

            bst_message_window(['Channel Information Saved in: ',fullfile(StudyPath,chan_bst_file)]);

            save_sensor_locs(Channel) % local subfunction
            bst_message_window([...
                    'Sensor locations can be checked in the MRI Tool by loading the file: sensor_result.mat'])
            drawnow

            addon = [];
            bst_file = [StudyNameRoot,'_data',addon];

            save_fieldnames(Data,bst_file);
            bst_message_window(['Data Saved in: ',fullfile(StudyPath,bst_file)]);
            drawnow

            % --------------------------------------------------------------------------------

        case 'OK' % Parameters are all set - import data NOW !

            ImportGUI = gcbf; % handle to import_dataselector.fig
            handles = guihandles(ImportGUI);
            TASKBAR = getappdata(0,'BrainStormTaskbar');

            VERBOSE = get(handles.TVerbose,'value');

            makeuswait('start')

            if VERBOSE
                clockk = fix(clock);
                bst_message_window({...
                        'Starting data import. . .',...
                        sprintf('%s - %dH %dmin %ds',date,clockk(4:6))...
                    })
                time0 = clock;
            end

            % Load parameters from GUI -----------------------
            SeqBlockRW = get(handles.cSeqBlockRW,'Value'); % Sequential extraction and save of data chunks - slower but memory-saver

            % Get the Data Tables
            DataInformation = getappdata(ImportGUI,'DataInformationTable');
            DataMarkerInterval = getappdata(ImportGUI,'DataMarkerIntervalTable');
            DataSubject = getappdata(ImportGUI,'DataSubjectTable');
            DataTrialSelection = getappdata(ImportGUI,'DataTrialSelectionTable');

            %         % What datasets will be imported ?
            %         switch(upper(getappdata(ImportGUI,'System'))) %
            %
            %             case 'CTF' % Get full information about file and data
            %
            if get(handles.cUseMarkers,'Value') % do not need markers, import the entire selected datasets

                iDataDir = get(handles.RawDataList,'Value');
                DataDir = getappdata(handles.RawDataList,'DSFolders');
                DataDir = DataDir(iDataDir);
                Marker = []; % No Marker I said
                DataInformation = DataInformation(iDataDir); % restricted to selected data sets
                try
                    DataTrialSelection = DataTrialSelection(iDataDir);
                catch
                    DataTrialSelection = [];
                end

                try
                    DataSubject = DataSubject(iDataDir); % idem
                catch % no subject was associated to selected data sets
                    DataSubject = cell(length(iDataDir),1);
                    [DataSubject(:)] = deal({1}); % Assume default subject
                end

                try
                    DataMarkerInterval = DataMarkerInterval(iDataDir); % If time range was user-specified
                catch
                    % Do nothing - time interval are empty cells
                end

                MarkerFile = 0; % Flag - meaning we're NOT using markers

            else % Use marker infomation
                % Bring back the assignement tables
                DataMarker = getappdata(ImportGUI,'DataMarkerTable');
                %Marker = getappdata(ImportGUI,'Markers');
                DataDir = getappdata(handles.RawDataList,'DSFolders');

                % Find data sets that were selected for importation
                % these are the ones which marker information is not empty
                iDataDir = [];
                for k = 1:length(DataMarker);
                    if ~isempty(DataMarker(k).MarkerName)
                        if (DataMarker(k).NoMarker == 0)
                            iDataDir = [iDataDir k];
                        end
                    end
                end
                DataDir = DataDir(iDataDir);
                DataMarker = DataMarker(iDataDir);

                if isempty(iDataDir) % No markers were defined for selected data sets
                    errordlg('Please select markers for each selected data sets')
                    return
                end
                DataInformation = DataInformation(iDataDir); % restricted to selected data sets

                % Get MarkerFile information from current dataset
                DataMarkerFile = getappdata(ImportGUI,'DataMarkerFileTable');
                DataMarkerFile = DataMarkerFile(iDataDir);

                % Now check whether all data sets have corresponding subjects assigned
                try
                    DataSubject = DataSubject(iDataDir); % idem
                catch % no subject was associated to selected data sets
                    DataSubject = cell(length(iDataDir),1);
                    [DataSubject(:)] = deal({1}); % Assume default subject

                    if VERBOSE
                        bst_message_window({...
                                'Assuming Default Subject for data set(s):',...
                                DataDir{:}...
                            });
                    end
                end

                try
                    DataMarkerInterval = DataMarkerInterval(iDataDir); % If time range was user-specified
                catch
                    % Do nothing - time interval are empty cells
                end

                MarkerFile = 1; % Flag - meaning we're using markers
            end

            %             otherwise % If SYSTEM ~= CTF
            %
            %                 % Do nothing
            %
            %         end % Switch (SYSTEM)
            %
            cd(Users.STUDIES) % Raw data sets are located in the STUDIES folder - so let's go.

            % --------------------------------------
            % For each of the selected data folders

            for K = 1:length(DataDir)

                % For clarity puroposes in database organization,
                % and rather than exporting data directly into the original data folder,
                % create a BrainStorm folder in data fodler and store the BsT files in it.

                % Look for possibly existing BrainStorm folder in the .ds folder
                % we are already in Users.STUDIES, search from here
                if ~isdir(DataDir{K})
                    homeDir = fileparts(DataDir{K});
                else
                    homeDir = DataDir{K};
                end

                BsTFolders = dir(fullfile(homeDir,'*BrainStorm'));
                % Look for folders only
                if ~isempty(BsTFolders)
                    BsTFolders = BsTFolders([BsTFolders.isdir] == 1);
                end

                if isempty(BsTFolders) % No BrainStorm folder found - create one
                    [SUCCESS,MESSAGE,MESSAGEID] = mkdir(fullfile(Users.STUDIES,homeDir),'BrainStorm');
                    if ~SUCCESS % error while creating the directory
                        bst_message_window('wrap','Error creating the BrainStorm default directory:')
                        if ispc,
                            % accept that there really was an error
                            errordlg(MESSAGE);
                        else
                            % pc is the only non-unix platform. Problem with linux systems (sometimes)
                            %  returning bad status, as of 15 Dec 2003
                            % Does the BrainStorm directory exist?
                            if exist(fullfile(Users.STUDIES,DataDir{K},'BrainStorm'),'dir'),
                                bst_message_window('wrap',{...
                                        'You are running a non-PC operating system.',...
                                        'There may be no actual error, since your directory exists.',...
                                        MESSAGE,...
                                        'Proceeding as if there were no error'});
                            else
                                % no directory, there really is a problem
                                error(MESSAGE)
                            end
                        end
                    end
                end

                % Deprecated code : SB - I'd rather create a study file anytime we're importing the data (if at multiple instances)
                % rather than manage several study files in same folder. This does not make too much sense for me anymore.
                % Oooooh things, they are changing .............

                %             [DataDir,DataPopup,Leader] = find_brainstorm_files('studies',DataDir{K});
                %             % Does not account for possibly multiple studies in one ds folder
                %             % Our convention so far is to have a single study file per .ds folder
                %
                %if isempty(DataPopup) | isempty(findstr(DataPopup,'study')) % No Study File available
                % Create one

                [path, rooot,ext] = fileparts(DataDir{K});
                study_file = [rooot,'_brainstormstudy.mat']; % Take the name of the .ds folde as prefix to the BrainStorm Study file.

                % Fill-out study fields
                Study.DateOfModification = date; % Default importation date
                Study.Session = []; % SB : Don't know what to do with this - of minor importance I think

                % Now we can assign or even create a Subject structure from the importation routine
                % What subject was selected for this study ?
                switch(DataSubject{K})
                    case 1 % Default subject was assigned
                        SubjectFolder = fullfile(Users.SUBJECTS,'BrainStormDefault');
                        if ~exist(SubjectFolder,'dir') % No default subject folder in Subjects data base
                            % create one
                            cd(Users.SUBJECTS)
                            [SUCCESS,MESSAGE,MESSAGEID] = mkdir('BrainStormDefault');
                            if ~SUCCESS % error while creating the directory
                                error(MESSAGE);
                                return
                            end
                            Name = 'BrainStorm Default'; % Name of Default Subject
                            save(fullfile(SubjectFolder,'bstdefault_brainstormsubject.mat'),'Name')
                        end

                        Study.BrainStormSubject = fullfile('Default','bstdefaut_brainstormsubject.mat');
                        %getpref('BrainStorm','DefaultSubject');

                    case 2 % Create new subject folder
                        SubjectFolder = strrep(DataDir{K},'.','_Subject'); % Build subject's folder name from data set prefix.
                        [SUCCESS,MESSAGE,MESSAGEID] = mkdir(Users.SUBJECTS,SubjectFolder);
                        if ~SUCCESS % error while creating the directory
                            error(MESSAGE);
                            return
                        end
                        % Create new SubjectFile
                        [path,File,ext]= fileparts(DataDir{K});
                        SubjectFile = [File,'_brainstormsubject.mat'];
                        Study.BrainStormSubject = fullfile(SubjectFolder,SubjectFile);
                        Name = [File, ' Subject'];
                        save(fullfile(Users.SUBJECTS,Study.BrainStormSubject),'Name')

                    otherwise % Get existing subject
                        Subjects = getpref('BrainStorm','Subjects',[]);
                        if(~isempty(Subjects)),
                            Study.BrainStormSubject = Subjects(DataSubject{K}-2).SubjectFile;
                        end
                end

                if VERBOSE
                    bst_message_window('wrap',{,...
                            sprintf('Subject was assigned to data set %s',DataDir{K}),...
                            sprintf('Subject File: %s',Study.BrainStormSubject),...
                        });
                end

                cd(Users.STUDIES)

                % Not too happy with the following - needs to be loaded from the .res4 file.
                System = '';
                Device = '';
                NoiseCov = [];
                SourceCov = [];
                Projector = [];
                addon = []  ;
                F = [];

                %-- Switch to available data formats

                switch upper(getappdata(ImportGUI,'System')) % Type of data to be imported

                    case 'RAW'
                        % our generic import routines, both ASCII and Binary

                        importdata('fromRAW')

                    case {'BESA','NEUROSCAN','EGI'}
                        % Call F. Darvas import
                        % routines-------------------------------

                        % save out Study file
                        Study.Name = deblank(DataDir{K});
                        Study.DateOfStudy = 'N/A'; % Acquisition date
                        cd(fullfile(Users.STUDIES,fileparts(DataDir{K}),'BrainStorm'))
                        save_fieldnames(Study, study_file);
                        % -> Done

                        % --------------------------- Get channel information

                        % Pick a original channel file name
                        cd(fullfile(Users.STUDIES,fileparts(DataDir{K})))
                        [channelFile, pathname] = uigetfile( ...
                            {'*.elp';'*.mdl';'*.dat';'*.res';'*.sfp'}, ...
                            'Pick the original file containing informations about electrodes locations and labels');
                        if(~channelFile) %if no channelfile is choosen
                            bst_message_window('wrap',...
                                'Process canceled by user; no channel file was selected ');
                            return
                        end

                        % Call Darvas routine
                        [tmp,tmp,channelType] = fileparts(channelFile); % Channel file type given by file extension
                        [Channel,Landmark] = elpos2bs(fullfile(pathname,channelFile),'',strrep(channelType,'.',''));

                        % Save channel information.
                        save(fullfile('BrainStorm',[rooot,'_channel.mat']),'Channel','Landmark','-mat');

                        % Read data
                        [tmp,tmp,dataType] = fileparts(DataDir{K}); % Data file type given by file extension
                        Data = eeg2bs(DataDir{K},'',strrep(dataType,'.',''), Channel);

                        %                     % Specify missing data fields
                        %                     Data.System = 'ctf';
                        %                     Data.Device = 'Ctf_Axial_151';

                        % Save in BrainStorm format
                        bst_file = fullfile(fileparts(DataDir{K}),'BrainStorm',[rooot,'_data']);

                        save_fieldnames(Data,fullfile(Users.STUDIES,bst_file))
                        if VERBOSE
                            bst_message_window('wrap',...
                                ['Saving ',bst_file]);
                        end

                    case 'CTF'

                        DCOffset = getappdata(ImportGUI,'DCOffset'); % DCOffset flag

                        % save out Study file
                        Study.Name = deblank(DataInformation{K}.nfSetUp.nf_run_title);
                        Study.DateOfStudy = deblank(DataInformation{K}.data_date); % Acquisition date
                        cd(fullfile(Users.STUDIES,DataDir{K},'BrainStorm'))
                        save_fieldnames(Study, study_file);
                        % -> Done

                        % Specify missing data fields
                        System = 'ctf';
                        Device = 'Ctf_Axial_151';

                        %-----------------------------------------------------------------------
                        res4_mat = fullfile(Users.STUDIES,DataDir{K},'BrainStorm',[rooot,'_res4.mat']);

                        if MarkerFile == 0 % No markerfile is present - import the whole trials within a given time extraction window

                            % Get time range specifications
                            if ~isempty(DataMarkerInterval{K})
                                DataMarker(K).TimeRange = str2num(DataMarkerInterval{K});
                            else
                                DataMarker(K).TimeRange = []; % Import whole trial
                            end

                            % get Trial selection specifications
                            if ~isempty(DataTrialSelection{K})
                                try
                                    Trials = str2num(DataTrialSelection{K});
                                catch
                                    errordlg(sprintf('Unvalid numerical writing: %s', DataTrialSelection{K}))
                                end
                            else
                                Trials = []; % Import all trials
                            end

                            % Keep data in native data file format ?
                            if get(handles.TNativeFormat,'Value')
                                READRES = 3; % Code for ds2brainstorm routine
                            else
                                READRES = 0; % Code for ds2brainstorm routine
                            end

                            [Ftmp,Channel,imegsens,ieegsens,iothersens,irefsens,grad_order_no,no_trials,filter,Time, Comment] = ...
                                ds2brainstorm(fullfile(Users.STUDIES,DataDir{K}),VERBOSE,READRES,[],DataMarker(K).TimeRange,Trials,DCOffset);

                            % ------------------------------ DEFINE EEG REFERENCE
                            % When EEG data is available,
                            % check here if an EEG reference was defined.
                            % If not, ask for it and store it somewhere so that when the Channel.mat file is created, the EEG reference
                            % is properly defined.

                            if ~isempty(ieegsens) % EEG Data is available

                                SameRefForAll = get(handles.checkSameRefForAll,'Value'); % Flag: 1 means "same EEG reference all selected data sets"
                                if SameRefForAll ~= 1 % Not the same EEG reference for all selected data sets - ask for a new reference then.

                                    % NOT IMPLEMENTED YET !
                                    % At this time, user needs to select data sets with same EEG reference.

                                    % Open listbox figure and fill with EEG electrode names
                                    TriList = openfig('generic_listbox_win.fig');
                                    TriHandles = guihandles(TriList);
                                    set(TriHandles.listbox,'String',char({'Average Reference',char(Channel(ieegsens).Name)}),...
                                        'ListboxTop',1,'Max',1)
                                    set(TriList,'Name','Select EEG Reference')
                                    set(TriHandles.DONE,'Callback',sprintf('%s EEGRefSelected', mfilename))
                                end

                                % Update Channel structure
                                EEGRef = get(handles.popupEEGRef,'Value');
                                if EEGRef == 1 % Average Reference
                                    [Channel(ieegsens).Comment] = deal('AVERAGE REF'); % Average potentials reference.
                                else
                                    Channel(ieegsens(EEGRef - 1)).Type = 'EEG REF'; % Specific channel for EEG reference.
                                end
                            end
                            % ------------------------------ DEFINE EEG REFERENCE - DONE

                            save(fullfile('BrainStorm',[rooot,'_channel.mat']),'Channel','-mat');

                            %Correct data in nth-order gradient if originaly saved in raw format
                            if ~isempty(find(grad_order_no(imegsens)==0))
                                ButtonName = questdlg('Would you like to save the data sets with the 3rd-order gradient correction ?','Raw data detected','Yes','No','Yes');
                                switch(ButtonName)
                                    case 'No'
                                        % Do nothing
                                        CorrectionFlag = 0;
                                    case 'Yes'
                                        % Apply correction to all trials
                                        CorrectionFlag = 1;
                                end
                            else
                                % Do nothing
                                CorrectionFlag = 0;
                            end

                            if ~get(handles.TNativeFormat,'Value')

                                for trial = 1:length(Ftmp) % For each trial

                                    % Are we splitting Trials into several BrainStorm data files ?
                                    switch get(handles.cSplitTrials,'Value')
                                        case 1 % YES

                                            F = Ftmp{trial};

                                            % Generate a new Time vector according to the TimeRange
                                            [time] = findclosest(DataMarker(K).TimeRange, Time');
                                            %                         [mm,time(1)] = min(abs(Time - DataMarker(K).TimeRange(1)));
                                            %                         [mm,time(2)] = min(abs(Time - DataMarker(K).TimeRange(2)));
                                            nSamples = min([size(F,2),time(2)-time(1)+1]);
                                            time(2) = time(1)+nSamples-1;
                                            Time = Time(time(1):time(2));

                                        case 0 % NO: concatenate in a single data file (.mat)
                                            ntrials = length(Ftmp); % Number of trials to concatenate in single file
                                            for trial = 1:ntrials
                                                F = [F,Ftmp{trial}];
                                            end
                                            % Generate a new Time vector
                                            % according to the TimeRange and number of concatenated trials
                                            [time] = findclosest(DataMarker(K).TimeRange, Time');
                                            %                         [mm,time(1)] = min(abs(Time - TimeRange(1)));
                                            %                         [mm,time(2)] = min(abs(Time - TimeRange(2)));
                                            nSamples = min([size(F,2),time(2)-time(1)+1]);
                                            time(2) = time(1)+nSamples-1;
                                            Time = Time(time(1):time(2)); % Time is the time vector for only one trial
                                            % Extend to ntrials
                                            Time = [Time(1):Time(2)-Time(1):ntrials*Time(end)];
                                    end

                                    if CorrectionFlag
                                        % Apply 3rd-order gradient correction if data originally stored as 1st-order gradc corrected
                                        fprintf('Applying Gradient Correction....')
                                        F(imegsens,:) = F(imegsens,:) - Channel(imegsens(1)).Comment*F(irefsens,:);
                                        fprintf('Applying Gradient Correction....DONE')
                                    end

                                    % Suffix to DataFile names
                                    addon = ['_Trial',int2str(Trials(trial))];
                                    bst_file = fullfile(DataDir{K},'BrainStorm',[rooot,'_data',addon]);

                                    if trial == 1 % Fill-out ChannelFlag

                                        ChannelFlag = ones(size(F,1),1); % By default

                                        % Look for a badchannel file if exists
                                        cd(Users.STUDIES)
                                        if exist(fullfile(DataDir{K},'BadChannels'),'file')
                                            badchan_name = textread(fullfile(DataDir{K},'BadChannels'),'%s');
                                            if ~isempty(badchan_name)
                                                bst_message_window(['Removing Bad Channels. . . - Trial',int2str(Trials(trial))])
                                                [tmp I] = intersect({Channel(:).Name},badchan_name);
                                                ChannelFlag(I) = -1; % set as bad
                                                bst_message_window('Removing Bad Channels. . .  - DONE')
                                            end
                                        end
                                    end

                                    save(fullfile(Users.STUDIES,bst_file),'F','ChannelFlag','Device','Time','NoiseCov','SourceCov','Projector','Comment','System');
                                    if VERBOSE
                                        bst_message_window('wrap',...
                                            ['Saving ',bst_file]);
                                    end

                                end  % For each trial

                            else % Keep data in native file format

                                F = Ftmp;

                                % Data file name
                                addon = ['_NativeFormat'];
                                bst_file = fullfile(DataDir{K},'BrainStorm',[rooot,'_data',addon]);

                                ChannelFlag = ones(length(Channel),1); % By default

                                % Look for a badchannel file if exists
                                cd(Users.STUDIES)
                                if exist(fullfile(DataDir{K},'BadChannels'),'file')
                                    badchan_name = textread(fullfile(DataDir{K},'BadChannels'),'%s');
                                    if ~isempty(badchan_name)
                                        bst_message_window(['Removing Bad Channels. . . - Trial',int2str(file)])
                                        [tmp I] = intersect({Channel(:).Name},badchan_name);
                                        ChannelFlag(I) = -1; % set as bad
                                        bst_message_window('Removing Bad Channels. . .  - DONE')
                                    end
                                end

                                save(fullfile(Users.STUDIES,bst_file),'F','ChannelFlag','Device','Time','NoiseCov','SourceCov','Projector','Comment','System');
                                if VERBOSE
                                    bst_message_window('wrap',...
                                        ['Saving ',bst_file]);
                                end

                            end

                        else % Import data corresponding to selected marker

                            if ~exist(res4_mat,'file') % Res4 file does not exist - create it
                                ds2brainstorm(fullfile(Users.STUDIES,DataDir{K}),VERBOSE);    % Read data information only
                            end

                            load(res4_mat); % Now load all resources information
                            TimeOrig = Time; % Original trial time window
                            Comment = RunTitle;

                            % ------------------------------ DEFINE EEG REFERENCE
                            % When EEG data is available,
                            % check here if an EEG reference was defined.
                            % If not, ask for it and store it somewhere so that when the Channel.mat file is created, the EEG reference
                            % is properly defined.

                            if ~isempty(ieegsens) % EEG Data is available

                                SameRefForAll = get(handles.checkSameRefForAll,'Value'); % Flag: 1 means "same EEG reference all selected data sets"
                                if SameRefForAll ~= 1 % Not the same EEG reference for all selected data sets - ask for a new reference then.

                                    % NOT IMPLEMENTED YET !
                                    % At this time, user needs to select data sets with same EEG reference.

                                    % Open listbox figure and fill with EEG electrode names
                                    TriList = openfig('generic_listbox_win.fig');
                                    TriHandles = guihandles(TriList);
                                    set(TriHandles.listbox,'String',char({'Average Reference',char(Channel(ieegsens).Name)}),...
                                        'ListboxTop',1,'Max',1)
                                    set(TriList,'Name','Select EEG Reference')
                                    set(TriHandles.DONE,'Callback',sprintf('%s EEGRefSelected', mfilename))
                                end

                                % Update Channel structure
                                EEGRef = get(handles.popupEEGRef,'Value');
                                if EEGRef == 1 % Average Reference
                                    [Channel(ieegsens).Comment] = deal('AVERAGE REF'); % Average potentials reference.
                                else
                                    Channel(ieegsens(EEGRef - 1)).Type = 'EEG REF'; % Specific channel for EEG reference.
                                end
                            end
                            % ------------------------------ DEFINE EEG REFERENCE - DONE

                            save(fullfile(Users.STUDIES,DataDir{K},'BrainStorm',[rooot,'_channel.mat']),'Channel','-mat');

                            %Correct data in nth-order gradient if originaly saved in raw format
                            if ~isempty(find(grad_order_no(imegsens)==0))
                                ButtonName = questdlg('Would you like to save the data sets with the 3rd-order gradient correction ?','Raw data detected','Yes','No','Yes');
                                switch(ButtonName)
                                    case 'No'
                                        % Do nothing
                                        CorrectionFlag = 0;
                                    case 'Yes'
                                        % Apply correction to all trials
                                        CorrectionFlag = 1;
                                end
                            else
                                % Do nothing
                                CorrectionFlag = 0;
                            end

                            % Channels to be extracted
                            CHANNELS = [1:length(Channel)]; % CBB - needs to be more flexible; e.g. extract a subset of channels

                            %save(fullfile(Users.STUDIES,DataDir{K},'BrainStorm',[rooot,'_channel.mat']),'Channel','-mat');

                            % Time Range
                            try
                                DataMarker(K).TimeRange = str2num(DataMarkerInterval{K});
                            catch
                                errordlg(sprintf('Unvalid numerical writing: %s', DataMarkerInterval{K}))
                            end

                            cd(Users.STUDIES)
                            if VERBOSE
                                bst_message_window('wrap',{...
                                        ' ',...
                                        sprintf('-------- Processing dataset %s', DataDir{K})...
                                    });
                            end

                            if ~get(handles.TNativeFormat,'Value') % Don't keep data under native format

                                % Now loop on each Markers for this dataset.
                                for mrk = 1:length(DataMarker(K).MarkerName)

                                    if VERBOSE
                                        bst_message_window('wrap',{...
                                                sprintf('Extracting marker ''%s'' data', DataMarker(K).MarkerName{mrk})...
                                            });
                                    end

                                    if get(handles.cSeqBlockRW,'Value') == 0 % Read all trials from selected marker at once

                                        Ftmp = extract_ctf_markers(...
                                            DataDir{K}, DataMarker(K).TimeRange, CHANNELS, DataMarker(K).MarkerName,...
                                            DataMarker(K).Param, VERBOSE);
                                        Ftmp = Ftmp{1};

                                        for trial = 1:size(Ftmp,3) % For each trial

                                            % Are we splitting Trials into several BrainStorm data files ?
                                            switch get(handles.cSplitTrials,'Value')
                                                case 1 % YES

                                                    F = Ftmp(:,:,trial);

                                                    if trial == 1% Generate a new Time vector according to the TimeRange
                                                        %[mm,time(1)] = min(abs(Time - DataMarker(K).TimeRange(1)));
                                                        %[mm,time(2)] = min(abs(Time - DataMarker(K).TimeRange(2)));
                                                        time = findclosest(DataMarker(K).TimeRange, Time');
                                                        nSamples = min([size(F,2),time(2)-time(1)+1]);
                                                        time(2) = time(1)+nSamples-1;
                                                        Time = Time(time(1):time(2));
                                                    end

                                                    % Suffix to DataFile names
                                                    addon = ['_',deblank(strrep(DataMarker(K).MarkerName{mrk},' ','')),'_Sample',int2str(trial)];

                                                case 0 % NO: concatenate in a single data file (.mat)
                                                    ntrials = length(Ftmp); % Number of trials to concatenate in single file
                                                    for trial = 1:ntrials
                                                        F = [F,Ftmp(:,:,trial)];
                                                    end
                                                    % Generate a new Time vector
                                                    % according to the TimeRange and number of concatenated trials
                                                    %[mm,time(1)] = min(abs(Time - TimeRange(1)));
                                                    %[mm,time(2)] = min(abs(Time - TimeRange(2)));
                                                    time = findclosest(DataMarker(K).TimeRange, Time');
                                                    nSamples = min([size(F,2),time(2)-time(1)+1]);
                                                    time(2) = time(1)+nSamples-1;
                                                    Time = Time(time(1):time(2)); % Time is the time vector for only one trial
                                                    % Extend to ntrials
                                                    Time = [Time(1):Time(2)-Time(1):ntrials*Time(end)];

                                                    % Suffix to DataFile names
                                                    addon = ['_',deblank(strrep(DataMarker(K).MarkerName{mrk},' ','')),'_AllSamples'];
                                            end

                                            bst_file = fullfile(DataDir{K},'BrainStorm',[rooot,'_data',addon]);

                                            if trial == 1
                                                %Correct data in nth-order gradient if originaly saved in raw format
                                                if ~isempty(find(grad_order_no(imegsens)==0))
                                                    ButtonName = questdlg('Would you like to save the data sets with the 3rd-order gradient correction ?','Raw data detected','Yes','No','Yes');
                                                    switch(ButtonName)
                                                        case 'No'
                                                            % Do nothing
                                                            CorrectionFlag = 0;
                                                        case 'Yes'
                                                            % Apply correction to all trials
                                                            CorrectionFlag = 1;
                                                    end
                                                else
                                                    % Do nothing
                                                    CorrectionFlag = 0;
                                                end

                                                ChannelFlag = ones(size(F,1),1); % By default
                                                % Look for a badchannel file if exists
                                                cd(Users.STUDIES)
                                                if exist(fullfile(DataDir{K},'BadChannels'),'file')
                                                    badchan_name = textread(fullfile(DataDir{K},'BadChannels'),'%s');
                                                    if ~isempty(badchan_name)
                                                        bst_message_window(['--------------------- Removing Bad Channels Trial',int2str(trial),' -----------------------'])
                                                        [tmp I] = intersect({Channel(:).Name},badchan_name);
                                                        ChannelFlag(I) = -1; % set as bad
                                                        bst_message_window('--------------------- Removing Bad Channels - DONE -------------------------------')
                                                    end
                                                end
                                            end

                                            if CorrectionFlag
                                                % Apply 3rd-order gradient correction if data originally stored as 1st-order gradc corrected
                                                fprintf('Applying Gradient Correction....')
                                                F(imegsens,:) = F(imegsens,:) - Channel(imegsens(1)).Gcoef*F(irefsens,:);
                                                fprintf('Applying Gradient Correction....DONE')
                                            end

                                            save(bst_file,'F','ChannelFlag','Device','Time','NoiseCov','SourceCov','Projector','Comment','System');

                                            if VERBOSE
                                                bst_message_window('wrap',...
                                                    ['Saving ',bst_file]);
                                            end
                                        end  % For each trial

                                    else % Lighter memory load: proceed by block-reading

                                        % Set nsamples to 1 and proceed iteratively
                                        DataMarker(K).Paramtmp.nsamples = 1;

                                        % Loop on each Marker occurence of current Marker
                                        for isample = 1:size(DataMarker(K).Param(mrk).trial_time,1)

                                            if VERBOSE
                                                bst_message_window('wrap',{...
                                                        sprintf('Marker sample : %d/%d', isample,DataMarker(K).Param(mrk).no_samples)...
                                                    });
                                            end

                                            DataMarker(K).Paramtmp.trial_time = DataMarker(K).Param(mrk).trial_time(isample,:); % Latency for current sample
                                            F = ...
                                                ds2brainstorm(fullfile(Users.STUDIES,DataDir{K}),VERBOSE,0,CHANNELS,...
                                                DataMarker(K).Param(mrk).trial_time(isample,2)+DataMarker(K).TimeRange,...
                                                DataMarker(K).Param(mrk).trial_time(isample,1),DCOffset);

                                            F = F{1};

                                            % Requested time window might be clipped
                                            % because marker could be too close from original
                                            % trial time window edges
                                            % Generate a new Time vector according to the TimeRange
                                            tmpTime = TimeOrig - DataMarker(K).Param(mrk).trial_time(isample,2); % Center trial time window around marker occurence
                                            tmp = findclosest(DataMarker(K).TimeRange,tmpTime);
                                            Time = tmpTime(tmp);
                                            Time = linspace(Time(1),Time(2),size(F,2));

                                            if CorrectionFlag
                                                % Apply 3rd-order gradient correction if data originally stored as 1st-order gradc corrected
                                                fprintf('Applying Gradient Correction....')
                                                F(imegsens,:) = F(imegsens,:) - Channel(imegsens(1)).Gcoef*F(irefsens,:);
                                                fprintf('Applying Gradient Correction....DONE')
                                            end

                                            if isample == 1
                                                cd(Users.STUDIES)
                                                ChannelFlag = ones(size(F,1),1); % By default
                                            end

                                            addon = ['_',deblank(strrep(DataMarker(K).MarkerName{mrk},' ','')),'_Sample',num2str(isample)];
                                            bst_file = fullfile(DataDir{K},'BrainStorm',[rooot,'_data',addon]);

                                            % Look for a badchannel file if exists
                                            cd(Users.STUDIES)
                                            if exist(fullfile(DataDir{K},'BadChannels'),'file')
                                                badchan_name = textread(fullfile(DataDir{K},'BadChannels'),'%s');
                                                if ~isempty(badchan_name)
                                                    bst_message_window('- Removing Bad Channels, Trial',int2str(isample))
                                                    [tmp I] = intersect({Channel(:).Name},badchan_name);
                                                    ChannelFlag(I) = -1; % set as bad
                                                    bst_message_window('- Removing Bad Channels -> DONE')
                                                end
                                            end
                                            save(bst_file,'F','ChannelFlag','Device','Time','NoiseCov','SourceCov','Projector','Comment','System');
                                            if VERBOSE
                                                bst_message_window('wrap',...
                                                    ['Saving ',bst_file]);

                                            end

                                        end % for each of current marker's sample

                                    end % if sequential block RW

                                end % For each Marker of selected dataset

                            else % Keep data in Native format

                                F = Ftmp;

                                % Data file name
                                addon = ['_NativeFormat'];
                                bst_file = fullfile(DataDir{K},'BrainStorm',[rooot,'_data',addon]);

                                ChannelFlag = ones(length(Channel),1); % By default

                                % Look for a badchannel file if exists
                                cd(Users.STUDIES)
                                if exist(fullfile(DataDir{K},'BadChannels'),'file')
                                    badchan_name = textread(fullfile(DataDir{K},'BadChannels'),'%s');
                                    if ~isempty(badchan_name)
                                        bst_message_window(['Removing Bad Channels. . . - Trial',int2str(file)])
                                        [tmp I] = intersect({Channel(:).Name},badchan_name);
                                        ChannelFlag(I) = -1; % set as bad
                                        bst_message_window('Removing Bad Channels. . .  - DONE')
                                    end
                                end

                                save(fullfile(Users.STUDIES,bst_file),'F','ChannelFlag','Device','Time','NoiseCov','SourceCov','Projector','Comment','System');
                                if VERBOSE
                                    bst_message_window('wrap',...
                                        ['Saving ',bst_file]);
                                end

                            end

                        end % if MarkerFile

                        if VERBOSE
                            bst_message_window(sprintf('Done with %s', DataDir{K}));
                            bst_message_window('wrap',{...
                                    ' ',...
                                    sprintf('Done with %s', DataDir{K})...
                                    'Bon appetit !',...
                                    ' '...
                                });
                        end

                    case 'NEUROMAG'
                        % Was working in  Helinski, Sept 2001
                        % Needs to be revisited though for importation of data projectors
                        %
                        % Necessitate the meg_1.2 routines + control that is actually running under any Linux plateform
                        % cf. http://boojum.hut.fi/~kuutela/meg-pd/

                        DataFiles = DataDir(get(listboxx,'value'));

                        % Coil coordinates in device coordinate system
                        Coil = cell(4001,1); % This cell array of structures contain the information on every type of coils that are used in the Neuromag/BTi systems

                        Coil{2}.Description = 'Neuromag-122 planar gradiometer';
                        Coil{2}.n = 2; % Number of integration points
                        Coil{2}.xyz = [8.1 0 0 ; -8.1 0 0]'; % Locations of Integration points for the magnetic field (mm)
                        Coil{2}.weights = [1/16.2 -1/16.2]; % weights to be applied at each integration point

                        Coil{3012}.Description = 'VectorView type 1 planar gradiometer';
                        Coil{3012}.n = 2; % Number of integration points
                        Coil{3012}.xyz = [8.4 0 0.3 ; -8.4 0 0.3]'; % Locations of Integration points for the magnetic field (mm)
                        Coil{3012}.weights = [1/16.8 -1/16.8]; % weights to be applied at each integration point

                        Coil{3013}.Description = 'VectorView type 2 planar gradiometer';
                        Coil{3013}.n = 2; % Number of integration points
                        Coil{3013}.xyz = [8.4 0 0.3 ; -8.4 0 0.3]'; % Locations of Integration points for the magnetic field (mm)
                        Coil{3013}.weights = [1/16.8 -1/16.8]; % weights to be applied at each integration point

                        Coil{3022}.Description = 'VectorView type 1 magnetometer';
                        Coil{3022}.n = 4; % Number of integration points
                        Coil{3022}.xyz = [12.9 12.9 0.3 ;12.9 -12.9 0.3 ;...
                                -12.9 12.9 0.3; -12.9 -12.9 0.3]'; % Locations of Integration points for the magnetic field (mm)
                        Coil{3022}.weights = [1/4 1/4 1/4 1/4]; % weights to be applied at each integration point

                        Coil{3023}.Description = 'VectorView type 2 magnetometer';
                        Coil{3023}.n = 4; % Number of integration points
                        Coil{3023}.xyz = [12.9 12.9 0.3 ;12.9 -12.9 0.3 ;...
                                -12.9 12.9 0.3; -12.9 -12.9 0.3]'; % Locations of Integration points for the magnetic field (mm)
                        Coil{3023}.weights = [1/4 1/4 1/4 1/4]; % weights to be applied at each integration point

                        Coil{2000}.Description = 'Ideal point magnetometer';
                        Coil{2000}.n = 1; % Number of integration points
                        Coil{2000}.xyz = [0 0 0];
                        Coil{2000}.weights = [1]; % weights to be applied at each integration point

                        Coil{4001}.Description = 'Magnes WH magnetometer';
                        Coil{4001}.n = 4; % Number of integration points
                        Coil{4001}.xyz = [5.75 5.75 0; -5.75 5.75 0;...
                                -5.75 -5.75 0; 5.75 -5.75 0]';
                        Coil{4001}.weights = [1/4 1/4 1/4 1/4]; % weights to be applied at each integration point

                        for K = 1:length(DataFiles)

                            if VERBOSE
                                bst_message_window({...
                                        ' ',...
                                        '----------------------------------------------------------------------------------',...
                                        ' Processing Channel Information ',...
                                        '----------------------------------------------------------------------------------',...
                                        ' '...
                                    })
                            end

                            fifFile = DataFiles{K};
                            %             channel_file = [channel_fileo(1:min(findstr(channel_fileo,'.'))),'apos'];

                            % Run megmodel to access channel information
                            megmodel([0 0 0], fifFile);

                            if ~exist('chaninfo','file') % meg_1.2 routines not available on this machine
                                errordlg('meg_1.2 routines not available on this machine. Please check the following link: http://boojum.hut.fi/~kuutela/meg-pd/');
                                return
                            end

                            [ChanType, ChanName,T] = chaninfo;
                            [GradPlan,Name] = chaninfo('type'); % GradPlan = 0 for magnetometers, 1 for gradiometers; Name indicates the system Neuromag_122 or Vectorview or Magnes

                            % CHEAT - Discard Gradiometers
                            if VERBOSE
                                bst_message_window('Magnetometers were discarded from the importation' )
                                drawnow
                            end
                            iGrad = find(GradPlan);
                            ChanType = ChanType(iGrad);
                            ChanName = ChanName(iGrad,:);
                            GradPlan = GradPlan(iGrad);
                            Name = Name(iGrad);
                            T = T(iGrad);

                            nchan= length(T); % Number of channels
                            ieeg = 0; imeg = 0;
                            iother = 0;
                            megID = [];
                            eegID = [];
                            otherID = [];

                            chaneeg = [];% Index of EEG channels
                            chanmeg = [];chanother = [];

                            [Channel(1:nchan)] = deal(struct('Loc',[],'Orient',[],'Comment',[],'Weight',[],'Type',[],'Name',''));
                            if VERBOSE
                                % hwait = waitbar(0,'Reading Channel Information...');
                                bst_message_window('Reading Channel Information');
                                bst_message_window(sprintf('Reading %.0f of %.0f . . .',1,nchan));
                            end

                            for chan = 1:nchan
                                if VERBOSE
                                    % waitbar(chan/nchan,hwait)
                                    if(~rem(nchan,20)), % not every time
                                        bst_message_window('overwrite',...
                                            sprintf('Reading %.0f of %.0f . . .',chan,nchan));
                                    end
                                end

                                switch upper(strtok(ChanName(chan,:)))
                                    case 'MEG'
                                        if nchan == 122 % A little cheat here as the channel type is not obtained explicitly from th ecurrent chaninfo routine
                                            % Check for channel type
                                            Device = 'Neuromag-122';
                                            switch GradPlan(chan)
                                                case 0 % Magnetometer - should not occur with the Neuromag 122
                                                    CType = 2000;
                                                case 1 % Gradiometer
                                                    CType = 2;
                                            end

                                        elseif nchan == 204%306
                                            Device = 'Vectoview-306';
                                            switch GradPlan(chan)
                                                case 0 % Magnetometer -
                                                    CType = 3022;
                                                case 1 % Gradiometer
                                                    CType = 3012;
                                            end

                                        end % Otherwise, I don't know how to handle the Magnes channels

                                        Channel(chan).Loc = T{chan}*[Coil{CType}.xyz/1000;ones(1,Coil{CType}.n)];
                                        Channel(chan).Loc = Channel(chan).Loc(1:3,:);
                                        Channel(chan).Orient = T{chan}*[[0 0 1]' * ones(1,Coil{CType}.n);zeros(1,Coil{CType}.n)];
                                        Channel(chan).Orient = Channel(chan).Orient(1:3,:);

                                        %Channel(chan).Comment = setdiff(ChanName(chan,:),strtok(ChanName(chan,:)));
                                        Channel(chan).Comment = ChanName(chan,:);
                                        Channel(chan).Type = 'MEG';%upper(strtok(Label(chan,:)));
                                        chanmeg = [chanmeg,chan];
                                        Channel(chan).Weight = Coil{CType}.weights*1000 ;
                                        imeg = imeg + 1;
                                        megID(imeg) = chan;
                                        Channel(chan).Name = strrep(Channel(chan).Comment,'MEG ','');
                                    case 'EEG' % Should not be available from 4D data
                                        ieeg = ieeg + 1;
                                        eegID(ieeg) = chan;
                                        if ~isempty(Extra)
                                            if ieeg < max(size(Extra))
                                                Channel(chan).Loc =[Extra(ieeg,:)',Extra(ieeg,:)'];
                                            else
                                                Channel(chan).Loc = [];
                                            end

                                            Channel(chan).Orient = [];
                                            Channel(chan).Type = 'EEG';%upper(strtok(Label(chan,:)));
                                            Channel(chan).Comment = [Label(chan,:),' ',int2str(ieeg)];
                                        end
                                        Channel(chan).Type = upper(strtok(Label(chan,:)));
                                        Channel(chan).Comment = [Label(chan,:),' ',int2str(ieeg)];
                                        Channel(chan).Weight = [];
                                        chaneeg = [chaneeg,chan];
                                        Channel(chan).Name = int2str(ieeg) ;

                                    otherwise
                                        iother = iother+1;
                                        otherID(iother) = chan;
                                        Channel(chan).Loc = [];
                                        Channel(chan).Orient = [];
                                        Channel(chan).Type = 'OTHER';
                                        Channel(chan).Comment = [Label(chan,:),' ',int2str(iother)];
                                        Channel(chan).Weight = [];
                                        chanother = [chanother,chan];
                                        Channel(chan).Name = int2str(iother) ;
                                end

                            end % End load chaninfo

                            if VERBOSE
                                % close(hwait)
                            end

                            %ChannelID = {megID,eegID,otherID};
                            Current = getfield(get(TASKBAR,'Userdata'),'Users');
                            cd(Current.STUDIES)

                            [study_file,path] = uigetfile(['*_brainstormstudy.mat'], 'Please select the related BrainStorm Study File');
                            if study_file == 0, return, end

                            cd(path)
                            save_sensor_locs(Channel) % local subfunction
                            bst_message_window(['Sensor locations can be checked in the MRI Tool by loading the file: sensor_result.mat'])
                            drawnow

                            rooot = findstr(study_file,'brainstormstudy.mat');
                            if isempty(rooot)
                                errordlg('Study file name should be of the form ''*brainstormstudy.mat''')
                                return
                            end
                            rooot = study_file(1:rooot-2);

                            chan_bst_file = [rooot,'_channel'];

                            if VERBOSE
                                bst_message_window({...
                                        ' ',...
                                        '----------------------------------------------------------------------------------',...
                                        ' Processing Channel Information -> DONE ',...
                                        '----------------------------------------------------------------------------------',...
                                        ' '...
                                    })
                            end

                            % ------------------------------------------------------------------------------- Reading Data

                            if VERBOSE
                                bst_message_window({...
                                        '----------------------------------------------------------------------------------',...
                                        ' ',...
                                        sprintf('BrainStorm -> Reading Data Information - %s',fifFile)...
                                    });
                            end

                            if VERBOSE
                                bst_message_window({...
                                        'BrainStorm -> Done',...
                                        '----------------------------------------------------------------------------------',...
                                        ' '...
                                    })
                            end

                            [N,comments]=loadfif(fifFile,'sets'); % How many data sets are there ?

                            NoiseCov = [];
                            SourceCov = [];
                            Projector = [];
                            for subfile = 1:N
                                [F,sfreq,t0]=loadfif(fifFile,subfile-1);

                                if size(F,1)>204 % There are magnetometers here
                                    F = F(iGrad,:);
                                end
                                ChannelFlag = ones(size(F,1),1); % By default

                                Time = t0+[0:1/sfreq:size(F,2)/sfreq-1/sfreq];  % in seconds

                                Comment = comments{subfile};
                                bst_message_window(Comment)
                                drawnow

                                addon = [];
                                Data = struct('datafile','','F',F,'ChannelFlag',ChannelFlag,'Time',Time,'NoiseCov',NoiseCov,...
                                    'SourceCov',SourceCov,'Projector',Projector,'Comment',Comment,'addon',addon);

                                Data = struct2cell(Data);
                                [datafile, Fo,Channelo,Time,NoiseCov,SourceCov,Projector,Comment,addon] = deal(Data{:});
                                if N > 1
                                    addon = ['_',num2str(subfile)];
                                end
                                id = findstr(lower(fifFile),'.fif');
                                rooot = strrep(fifFile(1:id-1),'.','_');
                                bst_file = [rooot,'_data',addon];
                                %Device = 'Neuromag_Planar_122';

                                System = 'neuromag';

                                save(bst_file,'F','ChannelFlag','System','Device','Time','NoiseCov','SourceCov','Projector','Comment');

                            end

                            I = findstr(bst_file,['_data']);
                            if isempty(I)
                                error('Cannot find file for channel information')
                                return
                            end

                            ChannelFile = bst_file(1:I-1);
                            ChannelFile = [ChannelFile,'_channel'];
                            save(ChannelFile ,'Channel');

                        end

                        if VERBOSE
                            msgbox(['Data saved in BrainStorm format in ',bst_file(1:end),'.mat'],'BrainStorm Message');
                            %msgbox(['Channel information saved in ',ChannelFile,'.mat'],'BrainStorm Message');
                        end

                end % switch(SYSTEM)

            end % for each file to import... for Datadir

            if VERBOSE
                clockk = fix(clock);
                bst_message_window({...
                        'Finished data importation:',...
                        sprintf('%s - %dH %dmin %ds (took %3.2f seconds)',date,clockk(4:6), etime(clock,time0))...
                    })
            end

            makeuswait('stop')

            % --------------------------------------------------------------------------------
        case 'mutincomp' % Raw/Average
            handles = findobj(gcbf,'callback','importdata mutincomp');
            mutincomp(handles)

        end % end of major switchyard and this function

        % --------------------------------------------------------------------------------
        function  save_sensor_locs(Channel)
        % Save Channel location in a pseudo-result file for visualization in the MRITool

        nchan = length(Channel);
        meg = good_channel(Channel,ones(nchan,1),'MEG');
        eeg = good_channel(Channel,ones(nchan,1),'EEG');

        nchan= length([meg,eeg]);
        SourceLoc = cell(1,nchan);

        i = 0;
        for k = [meg,eeg]
            i = i+1;
            SourceLoc{i} = Channel(k).Loc(:,1);
            SourceOrder(i) = -1;
            Comment = 'Sensor Locations';
        end

        DataFlag = 'Sensors';
        save sensor_result SourceLoc SourceOrder DataFlag Comment

Produced by color_mat2html, a customized BrainStorm 2.0 (Alpha) version of mat2html on Tue Nov 2 16:17:59 2004
Cross-Directory links are: ON