[Master Index] [Index for Toolbox]

# bst_imaging_display

## (Toolbox/bst_imaging_display.m in BrainStorm 2.0 (Alpha))

### Function Synopsis

    varargout = bst_imaging_display(varargin)

### Help Text

    BST_IMAGING_DISPLAY - : display utility for cortical distributed source imaging
     function varargout = bst_imaging_display(varargin)
    function varargout = bst_imaging_display(ImagingFigure,ImageGridLoc,ImageGridAmp,varargin)
     if nargin == 2
           ImageGridAmp = varargin{1};
     		OPTIONS = varargin{2};

     ----------------------------------------------------------------------------------------------

### Cross-Reference Information

This function calls

    bst_message_window                 C:\BrainStorm_2001\Toolbox\bst_message_window.m
    catci                              C:\BrainStorm_2001\Toolbox\catci.m
    curvature_cortex                   C:\BrainStorm_2001\Toolbox\curvature_cortex.m
    dataplot_cb                        C:\BrainStorm_2001\Toolbox\dataplot_cb.m
    get_user_directory                 C:\BrainStorm_2001\Toolbox\get_user_directory.m
    good_channel                       C:\BrainStorm_2001\Toolbox\good_channel.m
    grayish                            C:\BrainStorm_2001\Toolbox\grayish.m
    interp_mail                        C:\BrainStorm_2001\Toolbox\interp_mail.m
    norcol                             C:\BrainStorm_2001\Toolbox\norcol.m
    norlig                             C:\BrainStorm_2001\Toolbox\norlig.m
    plot_dipole                        C:\BrainStorm_2001\Toolbox\plot_dipole.m
    vertices_connectivity              C:\BrainStorm_2001\Toolbox\vertices_connectivity.m
    view_surface                       C:\BrainStorm_2001\Toolbox\view_surface.m

This function is called by

    dataplot_cb                        C:\BrainStorm_2001\Toolbox\dataplot_cb.m
    rapmusic_gui                       C:\BrainStorm_2001\Toolbox\rapmusic_gui.m
    set_sourceviewing_parameters       C:\BrainStorm_2001\Toolbox\set_sourceviewing_parameters.m
    zscore_gui                         C:\BrainStorm_2001\Toolbox\zscore_gui.m

### Listing of function C:\BrainStorm_2001\Toolbox\bst_imaging_display.m

    function varargout = bst_imaging_display(varargin)
    %BST_IMAGING_DISPLAY - : display utility for cortical distributed source imaging
    % function varargout = bst_imaging_display(varargin)
    %function varargout = bst_imaging_display(ImagingFigure,ImageGridLoc,ImageGridAmp,varargin)
    % if nargin == 2
    %       ImageGridAmp = varargin{1};
    %         OPTIONS = varargin{2};
    %
    % ----------------------------------------------------------------------------------------------

    %<autobegin> ---------------------- 12-Oct-2004 01:10:59 -----------------------
    % --------- Automatically Generated Comments Block Using AUTO_COMMENTS ---------
    %
    % CATEGORY: Visualization
    %
    % Alphabetical list of external functions (non-Matlab):
    %   toolbox\bst_message_window.m
    %   toolbox\catci.m
    %   toolbox\curvature_cortex.m
    %   toolbox\dataplot_cb.m
    %   toolbox\get_user_directory.m
    %   toolbox\good_channel.m
    %   toolbox\grayish.m
    %   toolbox\interp_mail.m
    %   toolbox\norcol.m
    %   toolbox\norlig.m
    %   toolbox\plot_dipole.m
    %   toolbox\vertices_connectivity.m
    %   toolbox\view_surface.m
    %
    % Subfunctions in this file, in order of occurrence in file:
    %   [] = DataOnSensors % Sensors are color-coded according to the data at each location
    %   [] = DataOnScalp % Interpolated Scalp Topography of Surface Data
    %   [] = CorticalMap(TessWin,OPTIONS) % See cortical current maps interpolated on the proper cortical surface
    %   [mixedRGB] = mix_curvature_current(varargin)
    %
    % Figure Files opened by this function:
    %   'mapping.fig'
    %   'tessellation_window.fig'
    %
    %   Format of strings below: Type:Style:Tag, "String", CallBack Type and Call
    %   <automatic> callback is <Tag>_Callback by Matlab default
    %
    % Callbacks by figure mapping.fig
    %   figure::mapping "" uses ButtonDownFcn for dataplot_cb line_select
    %   uicontrol:checkbox:ABSOLUTE "Absolute" uses Callback for dataplot_cb mutincomp_cmapping
    %   uicontrol:checkbox:Colorbar "Colorbar" uses Callback for dataplot_cb Colorbar_mapping
    %   uicontrol:checkbox:fit "Sensor array" uses Callback for dataplot_cb mapping_head_shape
    %   uicontrol:checkbox:gradient "Gradient" uses Callback for dataplot_cb mapping_type
    %   uicontrol:checkbox:magnetic "Mag. Field Estim." uses Callback for dataplot_cb mapping_type
    %   uicontrol:checkbox:movie "Movie" uses Callback for dataplot_cb mapping_display_type
    %   uicontrol:checkbox:raw "Raw Mapping" uses Callback for dataplot_cb mapping_type
    %   uicontrol:checkbox:RELATIVE "Relative" uses Callback for dataplot_cb mutincomp_cmapping
    %   uicontrol:checkbox:scalp "Scalp surface" uses Callback for dataplot_cb mapping_head_shape
    %   uicontrol:checkbox:ShowSensorLabels "Sensor Labels" uses Callback for dataplot_cb mapping_type
    %   uicontrol:checkbox:single "Single" uses Callback for dataplot_cb mapping_display_type
    %   uicontrol:checkbox:slides "Slides" uses Callback for dataplot_cb mapping_display_type
    %   uicontrol:checkbox:sphere "Sphere" uses Callback for dataplot_cb mapping_head_shape
    %   uicontrol:edit:current_time "0" uses Callback for dataplot_cb set_current_time
    %   uicontrol:pushbutton:go "Apply" uses Callback for dataplot_cb gomapping
    %   uicontrol:pushbutton:Pushbutton1 "Quit" uses Callback for delete(gcbf)
    %   uicontrol:slider:slider_time "" uses Callback for dataplot_cb mapping_slider
    %
    % Callbacks by figure tessellation_window.fig
    %   figure::tessellation_window "" uses CreateFcn for movegui northwest
    %
    % At Check-in: $Author: Mosher $  $Revision: 28 $  $Date: 10/11/04 11:32p $
    %
    % This software is part of BrainStorm Toolbox Version 2.0 (Alpha) 23-Sep-2004
    %
    % Principal Investigators and Developers:
    % ** Richard M. Leahy, PhD, Signal & Image Processing Institute,
    %    University of Southern California, Los Angeles, CA
    % ** John C. Mosher, PhD, Biophysics Group,
    %    Los Alamos National Laboratory, Los Alamos, NM
    % ** Sylvain Baillet, PhD, Cognitive Neuroscience & Brain Imaging Laboratory,
    %    CNRS, Hopital de la Salpetriere, Paris, France
    %
    % See BrainStorm website at http://neuroimage.usc.edu for further information.
    %
    % Copyright (c) 2004 BrainStorm by the University of Southern California
    % This software distributed  under the terms of the GNU General Public License
    % as published by the Free Software Foundation. Further details on the GPL
    % license can be found at http://www.gnu.org/copyleft/gpl.html .
    %
    % FOR RESEARCH PURPOSES ONLY. THE SOFTWARE IS PROVIDED "AS IS," AND THE
    % UNIVERSITY OF SOUTHERN CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY
    % WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF
    % MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY
    % LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE.
    %<autoend> ------------------------ 12-Oct-2004 01:10:59 -----------------------

    % EK 4-Oct-2004   Minor change in displaying the cortex: If the
    %                 ImageGridAmp is a vector (like in Neural Index Case) then
    %                 display this for any time point selected in time series window.
    % ----------------------------------------------------------------------------

    if nargin == 4
        OPTIONS = varargin{1};
    end

    Users = get_user_directory;

    % Define default values for display options
    Def_CutPlane_OPTIONS = struct(...
      'Top', 0, ...
      'Bottom', 0, ...
      'Front', 0, ...
      'Back', 0,...
      'Right', 0,...
      'Left', 0,...
      'X', [],...
      'Y', [],...
      'Z', [] ...
      );

    Def_OPTIONS = struct(...
        'CurvatureColor1',[.4 .4 .4],...
        'CurvatureColor2',[.6 .6 .6],...
        'Dipoles',[],...
        'OrthoViews',0,...
        'Time', 1, ...
        'ScalpMaps',0,...
        'ColorSensors',0,...
        'CorticalMap',1,...
        'ColorMapping','normalized',...
        'CDThreshold',.5,...
        'currDensityTransparency',.2, ...
        'CurvatureThreshold',.16,...
        'FaceVertexAlpha',.2,...
        'hPatch', NaN,...
        'MapCurvature',1,...
        'timeText',NaN,...
        'timeValue',[],...
        'Curvature', [], ...
        'InitialCurvature',[],...
        'FaceAlpha',1,...
        'VertConn', [],...
        'CutPlane', Def_CutPlane_OPTIONS...
        );

    % Check arguments passed to and required from function call
    if nargin < 3 % return default OPTIONS values

        if nargout > 1
            varargout{1} = Def_OPTIONS;
            varargout{2} = Def_OPTIONS;
        else
            varargout{1} = Def_OPTIONS;
        end
        if nargin == 2
            ImageGridAmp = varargin{1};
            if isempty(ImageGridAmp)
                ImageGridAmp = 0; % no current mapping - just a look at anatomy
            end
            OPTIONS = varargin{2};
        else
            return
        end

    else

        ImagingFigure = varargin{1};
        ImageGrid = varargin{2};
        ImageGridAmp = varargin{3};
        OPTIONS = varargin{4};

    end

    % Check field names of passed OPTIONS and fill missing ones with default values
    DefFieldNames = fieldnames(Def_OPTIONS);
    for k = 1:length(DefFieldNames)
        if ~isfield(OPTIONS,DefFieldNames{k})

            OPTIONS = setfield(OPTIONS,DefFieldNames{k},getfield(Def_OPTIONS,DefFieldNames{k}));

        end
    end

    clear Def_OPTIONS

    % ----------------------------------------------------------------------------------------------

    % tmp  = findobj(0,'tag','subplot_tess_window');
    % if ~isempty(tmp)
    %     ImagingFigure = tmp; % Consider the slides or movie window
    % end

    if ~ishandle(OPTIONS.hPatch) % no surface available: load vertex/faces information
        % Load surface information ------------------
        try
            load(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1})) % CBB - suppose there is one surface per tessellation file
        catch
            try
                load(ImageGrid.GridLoc{1})
            catch
                errordlg(sprintf('Subject file %s could not be found. Please update subject''s entry in database or manually update the subject information in selected results file.',fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1})),'Unvalid subject database entry');
                return
            end
        end

        FigName = Comment{ImageGrid.iGrid(1)}; clear Comment % Name of figure where to plot the surface
        %OPTIONS.SurfaceName = FigName;
        fv.faces = Faces{ImageGrid.iGrid(1)}; clear Faces
        fv.vertices = Vertices{ImageGrid.iGrid(1)}'; clear Vertices
        nverts_max = 10000; % Max number of vertices before warning
        if size(fv.vertices,1) > 10000
            ButtonName=questdlg(sprintf('Surface has %d vertices; would you like to downsample this number ?',size(fv.vertices,1)), ...
                'Large Surface Detected', ...
                'Yes','No','Yes');
            switch(ButtonName)
            case 'Yes'
                hmsg = msgbox('Downsampling original surface. . .','Working!','warn'); drawnow
                fv = reducepatch(fv,10000/size(fv.vertices,1),'fast','verbose');
                delete(hmsg);
            otherwise
                % do nothing
            end
        end

        % Load surface information----DONE----------
        figure(ImagingFigure)
        % Figure Parameters ------------------------
        set(ImagingFigure,'CurrentAxes',findobj(ImagingFigure,'Tag','MainAxis'),...
            'Renderer','OpenGL',...
            'Color','w', 'Colormap',gray,'Menubar','figure','Name',FigName);
    else
        fv.vertices = get(OPTIONS.hPatch,'Vertices');
    end

    %         % Surface orientation
    %         if ~isfield(Visu.Data,'System')
    %             Visu.Data.System = 'ctf';
    %         end

    % Figure Parameters -----------DONE---------

    if 0 % deprecated code (Sb 08-Oct-2003)

        %FragmentMenu = findobj(gcbf,'Tag','FragmentMenu');
        %nclust = get(FragmentMenu,'Value')-1; % Get label of clustering to visualize
        nclust = 0;

        hpatch = []; % handle(s) to patch objects in figure
        if OPTIONS.OrthoViews == 0
            hpatch = findobj(findobj(ImagingFigure,'Tag','MainAxes'),'Type','patch','Visible','on'); % CBB - store these handles in figure appdata ? (SB)
        else
            if ~isempty(findobj(findobj(ImagingFigure,'Tag','axsub1'),'Type','patch'))
                hpatch(1) = findobj(findobj(ImagingFigure,'Tag','axsub1'),'type','patch');
                hpatch(2) = findobj(findobj(ImagingFigure,'Tag','axsub2'),'type','patch');
                hpatch(3) = findobj(findobj(ImagingFigure,'Tag','axsub3'),'type','patch');
                hpatch(4) = findobj(findobj(ImagingFigure,'Tag','axsub4'),'type','patch');
            else
                if isempty(hpatch)
                    hpatch = [];
                end
            end
        end
    end % Deprecated code -------------------------

    % Work on cut planes --------------------------

    % work with facelapha property only?

    % Work on cut planes -------------DONE---------

    % Compute or retrieve curvature information --
    if OPTIONS.MapCurvature % Color coding of surface curvature

        if isempty(OPTIONS.Curvature) % No curvature mapping is available - compute it

            % Is vertex connectivity available ?
            %load(fullfile(Users.SUBJECTS,Users.CurrentData.SubjectFile),'VertConn');
            try
                load(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}),'VertConn');
            catch
                ImageGrid.GridLoc{1} = strrep(ImageGrid.GridLoc{1},Users.SUBJECTS,'');
            end
            load(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}),'VertConn');

            if ~exist('VertConn','var') % Vertex connectivity not computed yet
                load(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}),'Comment');
                VertConn = cell(length(Comment),1);
            end

            %VertConnFile = VertConn; % Filename containing connectivity information
            [pathname, filename] = fileparts(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}));

            cd(pathname)
            %if ~exist(VertConnFile,'file')
            if isempty(VertConn{ImageGrid.iGrid(1)})

                % How many surfaces in tessellation file ?
                % should be only one but older BrainStorm files may contain several
                load(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}),'Comment');
                nsurfaces = length(Comment); % Number of surfaces in tessellation file
                VertConn = cell(nsurfaces,1); % Create cell array where to store vertex connectivity values

                VertConn{ImageGrid.iGrid(1)} = vertices_connectivity(fv); % compute vertex connectivity
                [pathname, filename] = fileparts(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}));
                cd(pathname)
                save(ImageGrid.GridLoc{1},'VertConn','-append');

            else % load existing vertex connectivity map

                %load(fullfile(pathname,VertConnFile))

            end

            % Now compute curvature information
            OPTIONS.VertConn = VertConn{ImageGrid.iGrid(1)}; clear VertConn

            %[vertexcolorh,map]=c_activ(FV,TessWinUserData.VertConn); clear FV ; OPTIONS.Curvature = vertexcolorh;
            % Parameters for curvature computation
            sigmoid_const = .1;
            show_sigmoid = 0;

            if isempty(OPTIONS.InitialCurvature)
                load(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}),'Curvature');
                if ~exist('Curvature','var') % Vertex connectivity not computed yet
                    load(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}),'Comment');
                    Curvature = cell(length(Comment),1);
                end

                if isempty(Curvature{ImageGrid.iGrid(1)}) | size(Curvature{ImageGrid.iGrid(1)},2) > 1 % Older curvature computation

                    bst_message_window('wrap',...
                        {' ','Computing surface curvature. . .'})
                    [curvature_sigmoid,Curvature{ImageGrid.iGrid(1)}] = curvature_cortex(fv,OPTIONS.VertConn,sigmoid_const,show_sigmoid);
                    bst_message_window('wrap',...
                        {'Computing surface curvature ->DONE',' '})
                    clear curvature_sigmoid

                    save(fullfile(Users.SUBJECTS,ImageGrid.GridLoc{1}),'Curvature','-append');

                end

            end
            OPTIONS.InitialCurvature = Curvature{ImageGrid.iGrid(1)}; clear Curvature

        end

        % apply threshold
        OPTIONS.Curvature(OPTIONS.InitialCurvature >= OPTIONS.CurvatureThreshold) = .8;
        OPTIONS.Curvature(OPTIONS.InitialCurvature < OPTIONS.CurvatureThreshold) = -.8;

    end

    % Compute or retrieve curvature information --

    % Colormap for current density---
    tmp = hot(140);%flipdim(hot(100),1);
    currDensityColorMap = tmp(1:100,:); % Current density colormap
    %anatColorMap = repmat(linspace(.4,.6,100)',1,3); % Anatomy colormap
    anatColorMap = [OPTIONS.CurvatureColor1;...
            zeros(98,3);...
            OPTIONS.CurvatureColor2]; % Anatomy colormap - articifical zero padding
    % Colormap ----------DONE--------

    if ImageGridAmp == 0 % No activation is specified - look at anatomy only
        ImageGridAmp = ones(size(fv.vertices,1),length(OPTIONS.Time));
    end

    % Create patch object -------------------------
    if ~ishandle(OPTIONS.hPatch) % No patch handle is passed (i.e. need to create one)
        figure(ImagingFigure)
        PlotHandles.SurfaceName = FigName;
        [PlotHandles.hFigure,PlotHandles.hPatch,PlotHandles.hLights] = ...
            view_surface(FigName,fv.faces,fv.vertices,ImageGridAmp(:,OPTIONS.Time));
        % Dull rendering
        delete(findobj(PlotHandles.hFigure,'type','light'))
        %view(-10,0),
        material dull
        %PlotHandles.hLights = camlight;
        set(PlotHandles.hPatch,'backfacelighting','unlit')
        set(gca,'AmbientLightColor',[1 1 1])
        hold on
        rotate3d(PlotHandles.hFigure,'on')
        %set(hf,'color','k')
    else
        PlotHandles.hPatch = OPTIONS.hPatch;
    end

    % Create patch object ----------DONE-----------

    % Translate anatomy curvature in RGB values
    if ~OPTIONS.MapCurvature % no color coding of surface curvature
        if ishandle(PlotHandles.hPatch)
            fv.vertices = get(PlotHandles.hPatch,'Vertices');
        end

        index_anatomy = 100*ones(size(fv.vertices,1),1);

    else
        min_curv = min(OPTIONS.Curvature);
        max_curv = max(OPTIONS.Curvature);
        index_anatomy = floor((OPTIONS.Curvature-min_curv)*99/(max_curv-min_curv)+1);

    end

    anatRGB = anatColorMap(index_anatomy,:);

    % Translate current density values in RGB

    % Amplitude scaling
    ImageGridAmp = double(ImageGridAmp);
    switch lower(OPTIONS.ColorMapping) % is color mapping time-relative or time-normalized ?
    case 'normalized'
        if size(ImageGridAmp,2) == 1 %E.g Representation of  neural activity index
           if OPTIONS.Time >1
               bst_message_window('wrap',{'Currently visualized result does not change with time',' '});
           end

            currDensity = abs(ImageGridAmp(:,1))/max(abs(ImageGridAmp(:,1)));
        else
        currDensity = abs(ImageGridAmp(:,OPTIONS.Time))/max(abs(ImageGridAmp(:,OPTIONS.Time)));
        end
        limitValue = max(currDensity); % Store maximum value
    case 'relative'
            if size(ImageGridAmp,2) == 1 %E.g Representation of  neural activity index
                       if OPTIONS.Time >1
               bst_message_window('wrap',{'Currently visualized result does not change with time',' '});
           end
        currDensity = abs(ImageGridAmp(:,1))/max(abs(ImageGridAmp(:)));

            else
        currDensity = abs(ImageGridAmp(:,OPTIONS.Time))/max(abs(ImageGridAmp(:)));
            end
        limitValue = 1; % Force it to 1
    end
    % Apply amplitude threshold
    %tmpcurrDensity = currDensity;
    currDensity(currDensity < OPTIONS.CDThreshold) = 0;
    if limitValue == min(currDensity) % no current value above threshold
        limitValue = -1 ;
    end
    %clear tmpcurrDensity
    if 1%(viewmode == 1)%if real values
        index_density = floor((currDensity + limitValue)*99/(2*limitValue)+1);
    else %if abs values
        currDensity = abs(currDensity);
        index_density = floor((currDensity-limitValue)*99/limitValue+100);
    end
    currDensityRGB = currDensityColorMap(index_density,:);

    % Now mix curaveture and current RGBs
    mixedRGB = anatRGB;
    toBlend = find(currDensity ~= 0); % Find vertex indices holding non-zero activation (after thresholding)
    mixedRGB(toBlend,:) = OPTIONS.currDensityTransparency*anatRGB(toBlend,:)+...
        (1-OPTIONS.currDensityTransparency)*currDensityRGB(toBlend,:);

    % Assign color to surface elements

    set(PlotHandles.hPatch,'FaceVertexCData',mixedRGB);
    drawnow

    % Add text label to indicate current time
    if ~isempty(OPTIONS.timeValue)
        if ~ishandle(OPTIONS.timeText)
            OPTIONS.timeText = text(0.05,0.05,0,sprintf('%3.1f ms',1000*OPTIONS.timeValue),'units','normalized');
            set(OPTIONS.timeText,'fontweight','normal','color',[.3 .3 .3],'Fontname','helvetica','Fontsize',8,'FontUnits','Point');
        else
            set(OPTIONS.timeText,'String',sprintf('%3.1f ms',1000*OPTIONS.timeValue))
        end
    end

    % Now overlay dipole models if any -------------------------------------
    %rotate3d on

    if isempty(OPTIONS.Dipoles)
        varargout{1} = PlotHandles;
        varargout{2} = OPTIONS;
        %rotate3d(get(PlotHandles.hPatch,'Parent'),'on')
        return
    end

    %set(PlotHandles.hPatch,'edgecolor','none','FaceAlpha',0.3); hold on
    % Make transparency decrease with depth
    %fv.vertices = fv.vertices - repmat( mean(fv.vertices),size(fv.vertices,1),1);
    %  [TH,PHI,R] = CART2SPH(fv.vertices(:,1),fv.vertices(:,2),fv.vertices(:,3)); clear TH PHI
    %  R = R/max(R);
    % set(PlotHandles.hPatch,'edgecolor','none','FaceVertexAlpha',1-R,'facealpha','flat'); hold on

    axes(get(PlotHandles.hPatch,'Parent'))
    set(PlotHandles.hPatch,'FaceVertexAlpha',OPTIONS.FaceVertexAlpha,'facealpha','flat'); hold on

    scale = norcol(OPTIONS.Dipoles.TimeSeries); % Scale factor for amplitude display
    scale = scale/max(scale);
    scale(scale <.5) = .5; % Avoid too small dipoles
    scale = scale/200; % Dipole size needs to fit within cortical volume

    for src = 1:length(OPTIONS.Dipoles.SourceLoc)
        axes(get(PlotHandles.hPatch,'Parent'))
        if isempty(OPTIONS.Dipoles.Color{src})
            OPTIONS.Dipoles.Color{src} = rand(1,3);
        end
        plot_dipole(OPTIONS.Dipoles.SourceLoc{src}',...
            OPTIONS.Dipoles.Orientation{src}',...
            scale(src),OPTIONS.Dipoles.Color{src});
    end

    varargout{1} = PlotHandles;
    varargout{2} = OPTIONS;

    rotate3d(PlotHandles.hFigure,'on')

    return

    % Deprecated code below

    % Call subfunctions depending on type fo display
    if OPTIONS.ColorSensors
        DataOnSensors
    end
    if OPTIONS.ScalpMaps
        DataOnScalp
    end
    if OPTIONS.CorticalMap
        %CorticalMap(ImagingFigure,hpatch)
    else
        if get(OPTIONS.MapCurvature,'Value')
            set(hpatch,'FaceVertexCData',vertexcolorh)
        end
    end

    set(hpatch,'Visible','on')

    vertexcolorh =  get(hpatch,'FaceVertexCdata');

    %         if nclust > 0%k == nsurf & nclust > 0 % Some clustering has been selected - display clusters on the surface
    %             set(h,'FacevertexCdata',Clusters{nsurf}.Cluster{nclust},'Userdata',Clusters{nsurf}.Cluster{nclust}')
    %             colormap(rand(Clusters{nsurf}.NClusters(nclust),3))
    %         end

    hold on

    set(hpatch,'edgecolor','none','facealpha',OPTIONS.FaceAlpha)

    % Update envelope properties ------------------------------------------------------

    ctet = get(hpatch,'vertices');
    siz = size(vertexcolorh,2);
    if size(vertexcolorh,1) == 1
        vertexcolorh = ones(size(ctet,1),1)*vertexcolorh;
    end

    if 0

        if Vals(k,3) == 1
            vertexcolorh(find(ctet(:,2) < 0),:) = NaN * ones(length(find(ctet(:,2) < 0)),siz);
        end
        if Vals(k,4) == 1
            vertexcolorh(find(ctet(:,2) > 0),:) = NaN * ones(length(find(ctet(:,2) > 0)),siz);
        end

        if Vals(k,3) == 1 | Vals(k,4) == 1 % Separate both hemispheres

            % centering of the brain
            ctet2(:,1)=ctet(:,1)- mean(ctet(:,1));%sum(sum(ctet(:,1)))/size(ctet,1).*ones(size(ctet,1),1);
            ctet2(:,2)=ctet(:,2)- mean(ctet(:,2));%sum(sum(vu(:,2)))/size(vu,1).*ones(size(vu,1),1);
            ctet2(:,3)=ctet(:,3)- mean(ctet(:,3));;%sum(sum(vu(:,3)))/size(vu,1).*ones(size(vu,1),1);
            %             ctet2(:,1)=ctet(:,1)- sum(sum(ctet(:,1)))/size(ctet,1).*ones(size(ctet,1),1);
            %             ctet2(:,2)=ctet(:,2)- sum(sum(ctet(:,2)))/size(ctet,1).*ones(size(ctet,1),1);
            %             ctet2(:,3)=ctet(:,3)- sum(sum(ctet(:,3)))/size(ctet,1).*ones(size(ctet,1),1);
            %
            %             % find short and long axes
            %             larg1=max(max(ctet2(:,1)))-min(min(ctet2(:,1)));
            %             larg2=max(max(ctet2(:,2)))-min(min(ctet2(:,2)));
            %             if larg1<larg2
            %                 short_axe=1;
            %             else
            %                 short_axe=2;
            %             end
            %
            %             cd(Users.SUBJECTS)
            %             load(Users.CurrentData.SubjectFile,'VertConn'); % Is the vertex connectivity available ?
            %             load(VertConn)
            %             xVertConn = VertConn;
            %             if isempty(xVertConn{nsurf}) % Vertex connectivity not available: compute and save.
            %                 FV.faces = get(h,'faces');
            %                 FV.vertices = get(h,'vertices');
            %                 tmp = vertices_connectivity(FV); clear FV
            %                 xVertConn{nsurf} = tmp; clear tmp
            %                 load(Users.CurrentData.SubjectFile,'VertConn');
            %                 VertConnFile= VertConn; VertConn = xVertConn; clear xVertConn
            %                 save(VertConnFile,'VertConn','-append')
            %                 VertConn = VertConn{nsurf};
            %             else
            %                 VertConn = xVertConn{nsurf};
            %             end
            %

            %             [I_pos,I_neg] = separation(ctet2,VertConn); clear ctet2

            %SVD the vertex coordinates to find principal axes
            %Dowsize the vertex location matrix to run the SVD and find the axis of principal direction for the cortical volume
            nverts = size(ctet2,1);
            FV.faces = get(h,'faces');
            FV.vertices = get(h,'vertices');
            nfv = reducepatch(FV,1000); clear FV
            tmp = nfv.vertices; clear nfv
            tmp = tmp - repmat(mean(tmp),size(tmp,1),1);
            ndown = 500; % Objective for the number of vertices considered for determination of the main axes.
            rate = ceil(nverts/ndown);
            tmp = ctet2(1:rate:end,:);
            [U,s,V] = svd(tmp'/sqrt(size(tmp,1)-1),0); % Compute the SVD of the covariance coordinate matrix.
            s = sqrt(diag(s)); % Get the standard deviation in each direction

            % Draw orthogonal planes to illustrate the 3 orthogonal axes
            % Brain centroid
            brain_c = mean(ctet);
            % Get the axes limits;
            axh = get(h,'Parent'); % Get current surface parent
            Xlims = get(axh,'Xlim'); Ylims = get(axh,'Ylim'); Zlims = get(axh,'Zlim');

            % Parametric equation for all lines passing by brain_c in 3D: X = brain_c + U(:,i)*t
            fline = inline('brain_c'' + u*x','x','brain_c','u');% Create a function for the parametric expression of the line

            % Sagittal Line
            p1 = fline(-.1,brain_c,U(:,1))';
            p2 = fline(.1,brain_c,U(:,1))';

            hline(1) = line([p1(1) p2(1)],[p1(2) p2(2)],[p1(3) p2(3)]);

            % Sagittal Line
            p1 = fline(-.1,brain_c,U(:,2))';
            p2 = fline(.1,brain_c,U(:,2))';

            hline(2) = line([p1(1) p2(1)],[p1(2) p2(2)],[p1(3) p2(3)]);

            % Sagittal Line
            p1 = fline(-.1,brain_c,U(:,3))';
            p2 = fline(.1,brain_c,U(:,3))';

            hline(3) = line([p1(1) p2(1)],[p1(2) p2(2)],[p1(3) p2(3)]);

            %             % Select the clustering seed in one of the hemisphere: pick up the extreme point left or right vertex
            %             if short_axe == 1
            %                 [mm, imax] = min(abs(ctet2(:,1)));
            %             else
            %                 [mm, imax] = min(abs(ctet2(:,2)));
            %             end
            %
            %             [CLASS, NumClass] = crtx_cluster(VertConn,2,imax,1);
            %

            % Get corresponding t values

            if Vals(k,3) == 1
                I_pos = find(CLASS{1} == 1);
                vertexcolorh(I_pos,:) = NaN * ones(length(I_pos),siz);
            elseif Vals(k,4) == 1
                I_neg = find(CLASS{1} == 2);
                vertexcolorh(I_neg,:) = NaN * ones(length(I_neg),siz);
            end

            if Vals(k,5) == 1
                vertexcolorh(find(ctet(:,1) > 0),:) = NaN * ones(length(find(ctet(:,1) > 0)),siz);
            end
            if Vals(k,6) == 1
                vertexcolorh(find(ctet(:,1) < 0),:) = NaN * ones(length(find(ctet(:,1) < 0)),siz);
            end
            if Vals(k,7) == 1
                vertexcolorh(find(ctet(:,3) > 0),:) = NaN * ones(length(find(ctet(:,3) > 0)),siz);
            end
            if Vals(k,8) == 1
                vertexcolorh(find(ctet(:,3) < 0),:) = NaN * ones(length(find(ctet(:,3) < 0)),siz);
            end
        end
    end

    clear ctet

    if iscell(vertexcolorh)
        set(h,'FaceVertexCData',vertexcolorh{1},'Visible','on')
        if length(hpatch)>1 % OrthoViews
            for kk = 1:length(hpatch)
                h = hpatch(kk);
                set(h,'FaceVertexCData',vertexcolorh{1},'Visible','on')
            end

        end

    else
        if OPTIONS.OrthoViews == 1
            set(hpatch,'FaceVertexCData',vertexcolorh,'Visible','on')
        else
            set(hpatch,'FaceVertexCData',vertexcolorh,'Visible','on')
        end
    end
    vertexcolorh = []; % Move to next surface

    figure(ImagingFigure)
    hold off
    rotate3d(PlotHandles.hFigure,'on')
    if ~isempty(findobj(gcf,'Tag','MainAxes'))
        if length(hpatch)>1 & length(imesh) == 1% suplots with only one surface to display (need to generalize this)
            if ~strcmp(get(hpatch(4),'Visible'),'on')
                set(gca,'View',get(findobj(gcf,'Tag','MainAxes'),'view'))
            end
        end

    end

    %dataplot_cb mesh_lighting_props

    %------------------------------------ SubFunctions

    function [] = DataOnSensors % Sensors are color-coded according to the data at each location

    %dataplot_cb mapping_create
    Visu = get(DATAPLOT,'Userdata');
    previous  = openfig('tessellation_window.fig','reuse');

    % Handles to the spherical representation of the sensors
    sph = findobj(previous,'Tag','SENSORS');
    if isempty(sph) | isempty(get(previous,'userdata'))

        if ~isempty(sph)
            if strcmp(get(sph(1),'type'),'surface')
                sph = dataplot_cb('see_sensors');
            else
                sph = dataplot_cb('see_sensors_markers');
            end
        else
            TessWin = findobj(0,'Tag','tesselation_select');
            hTessWin = guihandles(TessWin);
            if get(hTessWin.Sensors3D,'Value')
                sph = dataplot_cb('see_sensors');
            else
                sph = dataplot_cb('see_sensors_markers');
            end
        end
        set(previous,'UserData',sph);
    else
        sph = get(previous,'Userdata'); % Need this and line above to keep sensor ordering correct - sph = findobj creates an arbitrary ordering otherwise
    end

    % Bring the time slider - call the mapping window if available
    MAPPING = openfig('mapping.fig','reuse');
    hMAPPING = guihandles(MAPPING);

    % Good/Bad Channels
    if ~isempty(find(Visu.Data.ChannelFlag == -1))
        goodchannels = good_channel(Visu.Channel,Visu.Data.ChannelFlag,DataType{current}); % Discard bad channels
        badchannels = setdiff(good_channel(Visu.Channel,ones(length(Visu.Channel),1),DataType{current}),goodchannels);
        %      goodchannels = setdiff(Visu.ChannelID{current},find(Visu.Data.ChannelFlag == -1));
        %badchannels = intersect(Visu.ChannelID{current},find(Visu.Data.ChannelFlag == -1));
    else
        goodchannels = setdiff(Visu.ChannelID{current},find(Visu.Data.ChannelFlag == -1));
        badchannels = [];
    end

    % Sampling rate
    srate = abs(Visu.Data.Time(1)-Visu.Data.Time(2) );   % Assuming time is in sec.
    ctime = round((get(hMAPPING.hDataplot.TimeSlider,'Value')/1000-Visu.Data.Time(1))/srate)+1;
    axx = get(sph(1),'Parent');

    data = Visu.Data.F(goodchannels,:); clear Visu
    %set(axx,'Clim',[-max(abs(data(:))) max(abs(data(:)))]);
    caxis(axx,[-max(abs(data(:))) max(abs(data(:)))]);
    data = data(:,ctime);

    C = [flipud(fliplr(hot(128)));hot(128)];
    colormap(axx,C);

    % Manipulation to get the color properly for each sensor sphere

    set(sph,'visible','off')
    TessWin = findobj(0,'Tag','tesselation_select');
    hTessWin = guihandles(TessWin);

    if get(hTessWin.Sensors3D,'Value')
        zdata = get(sph(1),'Zdata');
        for k=1:length(sph)
            cdata = data(k)*ones(size(get(sph(k),'zdata')));
            set(sph(k),'CData',cdata,'facecolor','flat','CDataMapping','scaled');
        end
    else
        for k=1:length(sph)
            set(sph(k),'Markerfacecolor',C( max([round(size(C,1)*(data(k)-min(caxis(axx)))/(max(caxis(axx))-min(caxis(axx)))),1]),:));
        end

    end

    set(sph,'visible','on')

    %--------------------------------------------------------------------------------------------------------------------

    function [] = DataOnScalp % Interpolated Scalp Topography of Surface Data

    %dataplot_cb mapping_create

    TessSelect = findobj(0,'Tag','tesselation_select');
    hSelect = guihandles(TessSelect);
    ActiveTess = get(hSelect.removed,'String'); % Find the active scalp surface
    % Check if the CORTEX keyword is present
    for k = 1:length(ActiveTess)
        flag(k) = ~isempty(findstr(lower(ActiveTess{k}),'head'));%'scalp'));
    end
    iScalp = find(flag);
    iScalp = iScalp(1);
    if isempty(iScalp)
        h = msgbox('Please select a scalp envelope from the tessellated surfaces available.');
        return
    end
    TessWin = openfig('tessellation_window.fig','reuse');

    Visu = get(DATAPLOT,'Userdata');
    if ~isempty(find(Visu.Data.ChannelFlag == -1))
        goodchannels = good_channel(Visu.Channel,Visu.Data.ChannelFlag,DataType{current}); % Discard bad channels
        badchannels = setdiff(good_channel(Visu.Channel,ones(length(Visu.Channel),1),DataType{current}),goodchannels);
        %      goodchannels = setdiff(Visu.ChannelID{current},find(Visu.Data.ChannelFlag == -1));% - min(Visu.ChannelID{current})+1; % Discard bad channels
        %badchannels = intersect(Visu.ChannelID{current},find(Visu.Data.ChannelFlag == -1));% - min(Visu.ChannelID{current})+1;
    else
        goodchannels = Visu.ChannelID{current};
        badchannels = [];
    end

    Scalp = findobj(TessWin,'Type','patch','Tag',ActiveTess{iScalp}); % Need to find a better way to identify scalp when multiple surfaces are present in tessellation_win
    if isempty(Scalp), tesselation_select_done, return, end

    if isempty(get(Scalp,'Userdata'))
        figure(TessWin)
        C = [flipud(fliplr(grayish(hot(128),.3)));grayish(hot(128),.3)];
        colormap(C)

        scalp.vertices = get(Scalp,'vertices');
        % Channels Locations
        j = 0;
        for chan = goodchannels
            j = j+1;
            %Projection of sensors on surface
            celec = ones(size(scalp.vertices,1),1)*Visu.Channel(chan).Loc(:,1)';
            dist = norlig(scalp.vertices-celec);
            [minn(j) imin(j)] = min(dist);
        end
        scalp.chanloc = [scalp.vertices(imin,1),scalp.vertices(imin,2),scalp.vertices(imin,3)];

        % Sampling rate
        scalp.srate = abs((Visu.Data.Time(2)-Visu.Data.Time(1)));
        data = Visu.Data.F(goodchannels,:);
        axx= get(Scalp,'Parent');
        set(axx,'Clim',[-max(abs(data(:))) max(abs(data(:)))]);
        set(Scalp,'Userdata',scalp)
    else
        scalp = get(Scalp,'Userdata');
    end

    % Get the data from the mapping window
    MAPPING = openfig('mapping.fig','reuse');
    hMAPPING = guihandles(MAPPING);
    ctime = round((get(hMAPPING.hDataplot.TimeSlider,'Value')/1000-Visu.Data.Time(1))/scalp.srate)+1;
    vertxcolor = interp_mail(scalp.vertices,scalp.chanloc,Visu.Data.F(goodchannels,ctime));
    set(Scalp,'FaceVertexCData',vertxcolor,'facecolor','interp');

    %--------------------------------------------------------------------------------------------------------------------

    function [] = CorticalMap(TessWin,OPTIONS) % See cortical current maps interpolated on the proper cortical surface

    % TessSelect = findobj(0,'Tag','tesselation_select');
    % hSelect = guihandles(TessSelect);
    % ActiveTess = get(hSelect.removed,'String'); % Find the active scalp surface
    % iCortex = get(hSelect.removed,'Value'); % Find the active scalp surface

    % if isempty(iCortex)
    %     h = msgbox('Please select a cortex surface from the tessellations available.');
    %     return
    % end

    %TessWin = findobj(0,'Tag','tessellation_window');
    SlidesWin = findobj(0,'Tag','subplot_tess_window');
    if ~isempty(SlidesWin)
        TessWin = SlidesWin; % Subplot or movie window
    end

    % if isempty(TessWin)
    %     TessWin = openfig('tessellation_window.fig');
    %     dataplot_cb('loaddata',Users.CurrentData.StudyFile,bst_static_taskbar('GET','DATA')); % Refresh by reloading data
    % end

    % Check if loaded Results match this surface (ie number of sources = number of vertices of selected cortical surface)
    Results = get(hSelect.ResultFiles,'Userdata');
    nSources = size(Results.ImageGridAmp,1);

    if nargin == 1 & ~OPTIONS.OrthoViews
        if iscell(ActiveTess)
            Cortex = findobj(get(TessWin,'CurrentAxes'),'Type','patch','Tag',ActiveTess{iCortex}); %CHEAT - need to be improved ?
        else
            Cortex = findobj(get(TessWin,'CurrentAxes'),'Type','patch','Tag',ActiveTess); %CHEAT - need to be improved ?
        end
    elseif nargin == 1 & get(hSelect.OrthoViews,'Value') == 1 % Orthogonal views are requested
        Cortex = findobj(get(TessWin,'CurrentAxes'),'Type','patch','Tag',ActiveTess,'Visible','on'); %CHEAT - need to be improved ?
        Cortex = Cortex(1);
    else
        Cortex = varargin{1}(1);
    end

    %set(Cortex,'Visible','off')
    if ~isfield(get(Cortex,'Userdata'),'srate')
        Visu = get(DATAPLOT,'Userdata');
        figure(TessWin)

        cortex = get(Cortex,'Userdata');

        cortex.vertices = get(Cortex,'vertices');
        % Sampling rate
        cortex.srate = abs(Visu.Data.Time(2)-Visu.Data.Time(1));
        data = Results.ImageGridAmp;
        axx= get(Cortex,'Parent');
        set(axx,'Clim',[-max(abs(data(:))) max(abs(data(:)))]);
        set(Cortex,'Userdata',cortex)

        % Result time window has priority over the original time window for the data - replace
        Visu.Data.Time = Results.ImageGridTime; % Need to do better than that - CHEAT
        try
            Visu.Data.F = Visu.Data.F(:,Results.Time(1):Results.Time(end)); % Should work only the first time the result time series are called - otherwise do nothing
        catch
            Visu.Data.F = Visu.Data.F; % Do nothing
        end

        set(DATAPLOT,'Userdata',Visu);

        M = max(abs(Results.ImageGridAmp(:)));
        set(hSelect.Colorbar,'Userdata',M);

    else
        cortex = get(Cortex,'Userdata');
    end

    %dataplot_cb mapping_create

    % Get the data from the mapping window
    MAPPING = findobj(0,'Tag','mapping');
    hMAPPING = guihandles(MAPPING);

    if iscell(cortex)
        ctime = round((get(hMAPPING.hDataplot.TimeSlider,'Value')/1000- Results.ImageGridTime(1))/cortex{1}.srate)+1;
    else
        ctime = round((get(hMAPPING.hDataplot.TimeSlider,'Value')/1000- Results.ImageGridTime(1))/cortex.srate)+1;
    end
    if ctime < 0, ctime =1; end

    if get(hSelect.AbsoluteCurrent,'Value')
        set(Cortex,'FaceVertexCData',abs(Results.ImageGridAmp(:,ctime)));
    else
        set(Cortex,'FaceVertexCData',Results.ImageGridAmp(:,ctime));
    end

    figure(TessWin)
    hTessWin = guihandles(TessSelect);
    if get(hTessWin.Normalize,'Value')
        TessWin = findobj(0,'Tag','tessellation_window');
        axx = findobj(TessWin,'tag','MainAxes');
        set(axx,'ClimMode','auto')
        M = max(abs(Results.ImageGridAmp(:,ctime)));
        set(hSelect.Normalize,'Userdata',M)

        SlidesWin = findobj(0,'Tag','subplot_tess_window');
        if ~isempty(SlidesWin)
            TessWin = SlidesWin; % Subplot or movie window
            axx = findobj(TessWin,'type','axes');
            set(axx,'ClimMode','auto')
        end

    else
        if get(hTessWin.FreezeColormap,'Value')
            data = get(Cortex,'FaceVertexCData');
            FreezeTime = get(hTessWin.FreezeColormap,'Userdata');
            M = max(abs(Results.ImageGridAmp(:,FreezeTime)));
        else
            M = max(abs(Results.ImageGridAmp(:)));
        end

        if get(hSelect.AbsoluteCurrent,'Value')
            set(findobj(TessWin,'type','axes'),'ClimMode','manual','Clim',[0 M])
        else
            set(findobj(TessWin,'type','axes'),'ClimMode','manual','Clim',[-M M])
        end
    end

    if isempty(get(hSelect.ColorMAP,'Userdata'))
        %if ~isfield(cortex,'CDepth') & ~get(hSelect.MapCurvature,'Value')% No curvature mapping
        if ~get(hSelect.MapCurvature,'Value')% No curvature mapping
            if ~get(hSelect.AbsoluteCurrent,'Value')
                C = [flipud(fliplr(grayish(hot(128),.3)));grayish(hot(128),.3)];
            else
                %C = [(grayish(hot(128),.3))];
                load bst_cactivcmap
                C = map;
            end
        else
            [FVC,C]=catci(get(Cortex,'FaceVertexCData'),cortex.CDepth,M);
            set(Cortex,'FaceVertexCData',FVC);
        end

    else % Truncated Colormap
        if ~isfield(cortex,'CDepth') % No curvature mapping
            C = get(hSelect.ColorMAP,'Userdata'); % Truncated Colormap
        else
            if get(hSelect.ZScoreThresholdApply,'Value') & get(hSelect.ZScore,'Value')
                cThres = 100*get(hSelect.ZScoreThreshold,'Userdata');
            else
                cThres = str2num(get(hTessWin.TruncateFactor,'String'));
            end

            [FVC,C]=catci(get(Cortex,'FaceVertexCData'),cortex.CDepth,M,cThres);
            if get(hSelect.OrthoViews,'Value') == 0
                set(Cortex,'FaceVertexCData',FVC);
            else
                Cortex = findobj(TessWin,'Type','patch','Tag',ActiveTess,'Visible','on'); %CHEAT - need to be improved ?
                set(Cortex,'FaceVertexCData',FVC);
            end

        end
    end

    colormap(C)

    % % ------------------------
    % case 'mapping_create' % Generates SLIDES and/or MOVIES
    %
    %    Visu = get(DATAPLOT,'Userdata');
    %    MEG = get(findobj(DATAPLOT,'Tag','MEG'),'value');
    %    EEG = get(findobj(DATAPLOT,'Tag','EEG'),'value');
    %    OTHER = get(findobj(DATAPLOT,'Tag','OTHER'),'value');
    %    current = find([MEG,EEG,OTHER] == 1);
    %
    %    mapping_win = findobj(0,'Tag','mapping');
    %    if isempty(mapping_win)
    %       open mapping.fig;
    %       mapping_win = findobj(0,'Tag','mapping');
    %    else
    %       return
    %    end
    %
    %    RAW = findobj(mapping_win ,'Tag','raw');
    %    GRADIENT = findobj(mapping_win ,'Tag','gradient');
    %    MAGNETIC = findobj(mapping_win,'Tag','magnetic');
    %
    %    if current == 1 % If MEG
    %       set([RAW,GRADIENT,MAGNETIC],'enable','on')
    %       set(RAW,'Value',1)
    %    else
    %       set([RAW,GRADIENT,MAGNETIC],'enable','off')
    %    end
    %
    %    start = findobj(mapping_win,'Tag','start');
    %    step = findobj(mapping_win,'Tag','step');
    %    stop = findobj(mapping_win,'Tag','stop');
    %    current_time = findobj(mapping_win,'Tag','current_time');
    %    hDataplot.TimeSlider = findobj(mapping_win,'Tag','hDataplot.TimeSlider');
    %    go = findobj(mapping_win,'Tag','go');
    %    SPHERE = findobj(mapping_win,'Tag','sphere');
    %    fit = findobj(mapping_win,'Tag','fit');
    %    ROTATE = findobj(mapping_win,'Tag','rotate');
    %    fit = findobj(mapping_win,'Tag','fit');
    %    slides = findobj(mapping_win,'Tag','slides');
    %    single = findobj(mapping_win,'Tag','single');
    %    MOVIE = findobj(mapping_win,'Tag','movie');
    %
    %    handles = guihandles(mapping_win);
    %
    %    set(mapping_win,'Name',[get(mapping_win,'Name'), ' - ', modality{current}])
    %
    %    set(start,'String', num2str(1000*Visu.Data.Time(1)))
    %    set(stop,'String', num2str(1000*Visu.Data.Time(end)))
    %    if length(Visu.Data.Time) > 1
    %       set(step,'String', num2str(1000*(Visu.Data.Time(2)-Visu.Data.Time(1)),2))
    %    else
    %       set(step,'String', 0)
    %    end
    %
    %
    %    data.TIME_MIN = str2num(get(findobj(DATAPLOT,'Tag','time_min'),'String'));
    %    data.TIME_MAX = str2num(get(findobj(DATAPLOT,'Tag','time_max'),'String'));
    %
    %    if data.TIME_MAX > Visu.Data.Time(end) * 1000
    %       data.TIME_MAX = Visu.Data.Time(end) * 1000;
    %       set(findobj(DATAPLOT,'Tag','time_max'),'String',num2str(data.TIME_MAX,5))
    %    end
    %
    %    if data.TIME_MIN < Visu.Data.Time(1) * 1000
    %       data.TIME_MIN = Visu.Data.Time(1) * 1000;
    %       set(findobj(DATAPLOT,'Tag','time_min'),'String',num2str(data.TIME_MIN,5))
    %    end
    %
    %    if ~isempty(mapping_win)
    %       hDataplot.TimeSlider = findobj(mapping_win,'Tag','hDataplot.TimeSlider');
    %       if length(Visu.Data.Time) > 1
    %          set(hDataplot.TimeSlider,'enable','on')
    %          set(hDataplot.TimeSlider,'Min',data.TIME_MIN,'Max',data.TIME_MAX)
    %       else
    %          set(hDataplot.TimeSlider,'Min',data.TIME_MIN,'Max',2*data.TIME_MAX)
    %          set(hDataplot.TimeSlider,'enable','off')
    %       end
    %
    %    end
    %    set(hDataplot.TimeSlider,'Value',data.TIME_MIN,'enable','on')
    %
    %    set(current_time,'String',num2str(get(hDataplot.TimeSlider,'Value'),4))
    %    set(single,'Value',1)
    %    mutincomp([single,slides,MOVIE])
    %    set(SPHERE,'Value',1)
    %    mutincomp([SPHERE,fit,handles.scalp])
    %
    %    % Draw time cursor
    %    figsingle = findobj(0,'Tag',['waves_single',int2str(current)]); % Figure of overlaping plots for the current modality
    %    if ~isempty(figsingle)
    %       figure(figsingle)
    %       ctime = get(hDataplot.TimeSlider,'Value');
    %       cursor = line([ctime ctime],get(gca,'Ylim'));
    %       set(cursor,'color','r','linewidth',3,'Tag','cursor','erasemode','Xor')
    %    end
    %
    %    fignplot = findobj(0,'Tag','nplot_win'); % superimposed n-plots
    %    if ~isempty(fignplot)
    %       figure(fignplot)
    %       ctime = get(hDataplot.TimeSlider,'Value');
    %       cursor = line([ctime ctime],get(gca,'Ylim'));
    %       set(cursor,'color','r','linewidth',3,'Tag','cursor','erasemode','Xor')
    %    end
    %    %-----------------------------------------------------------------------------------------------

    function [mixedRGB] = mix_curvature_current(varargin)

    % Various colormaps ---------------------------------------
    data.curDensityMapArray{1} = [zeros(17,2) (0.5:0.03:1)'
        zeros(29,1) (0.03:0.034:1)' ones(29,1)
        (0.3:0.3:1)' ones(3,2)
        1 1 1
        ones(26,1) (1:-0.039:0)' (1:-0.039:0)'
        (1:-0.021:0.5)' zeros(24,2)];

    data.curDensityMapArray{2} = [zeros(17,2) (0.5:0.03:1)' %17
        zeros(29,1) (0.03:0.034:1)' ones(29,1) %29
        (0.3:0.3:1)' ones(3,2) %3
        1 1 1
        ones(50,2) (1:-0.0202:0)']; %50

    tmp = hot(140);%flipdim(hot(100),1);
    data.curDensityMapArray{3} = tmp(1:100,:);%flipdim(hot(100),1);
    % Various colormaps ------------------DONE----------------

    [hf,hs,hl] = view_surface('test',Faces,tmpVertices,Results.ImageGridAmp(:,1));
    delete(findobj(gcf,'type','light'))
    %view(-10,0),
    material dull, camlight
    set(hs,'backfacelighting','unlit')
    hold on
    %set(hf,'color','k')

    colormap flag; colormenu
    flag = get(gcf,'colormap');
    flag = flag(:,[3 2 1]);
    colormap(flag)

    timee = 1:timestep:size(Results.ImageGridAmp,2)-corrsize/2;%
    corr = zeros(size(Results.ImageGridAmp(patchh,:),1),length(timee));
    tt = 0;
    tmp = Results.ImageGridAmp(patchh,timee);
    corr = abs(tmp)/max(tmp(:));%abs(activ(:,1+corrsize/2));

    corr(corr<cd_threshold) = 0; %Show current density that is at least 'display_threshold'% the maximum absolute value
    limitValue = max(abs(corr(:)));

    %Apply alpha blending
    %create anatomy and current density colormaps
    if(anatomy==1) anatomy=0.99; end
    scale = linspace(.4,.6,100);%anatomy:(1-anatomy)/99:1;
    data.anatMap = repmat(scale',1,3);
    if(viewmode == 1) %if real values
        data.curDensityMap = data.curDensityMapArray{colormap_selected};
    else %if abs values
        data.curDensityMap = data.curDensityMapArray{colormap_selected+2};
    end
    colormap(data.curDensityMap);

    %Get RGB info for anatomy
    min_curv = min(curvature);
    max_curv = max(curvature);
    data.index_anatomy = (floor((curvature-min_curv)*99/(max_curv-min_curv)+1));
    data.anatRGB = data.anatMap(data.index_anatomy,:);

    for t = 1:length(timee)

        %                 tmp = NaN * Results.ImageGridAmp(:,t);
        %                 tmp(patchh) = corr(:,t);
        %
        if(viewmode == 1)%if real values
            index_density = floor((corr(:,t)+limitValue)*99/(2*limitValue)+1);
            data.curDensityMap = data.curDensityMapArray{colormap_selected};
        else %if abs values
            corr = abs(corr);
            index_density = floor((corr(:,t)-limitValue)*99/limitValue+100);
            data.curDensityMap = data.curDensityMapArray{colormap_selected+2};
        end
        data.curDensityRGB = data.curDensityMap(index_density,:);
        data.toBlend = find(corr(:,t) ~= 0);
        mixedRGB = data.anatRGB;
        toBlend = data.toBlend;
        mixedRGB(patchh(toBlend),:) = cd_transparency*data.anatRGB(toBlend,:)+(1-cd_transparency)*data.curDensityRGB(toBlend,:);

        set(hs,'FaceVertexCData',mixedRGB);

        drawnow
    end

Produced by color_mat2html, a customized BrainStorm 2.0 (Alpha) version of mat2html on Tue Oct 12 12:05:14 2004
Cross-Directory links are: ON