[Master Index] [Index for Toolbox]

# help_preference_list

## (Toolbox/help_preference_list.m in BrainStorm 2.0 (Alpha))

### Function Synopsis

    help_preference_list;

### Help Text

    HELP_PREFERENCE_LIST - Explain the preferences used by BrainStorm
     function help_preference_list;
    Call as a function or type 'help help_preference_list' at the command line

    Generate this file using the development tool make_preference_list

    AS OF 24-Sep-2003 15:30:18:

     -----------------  BrainStorm  ---------------------

    The following Preferences are found in the BrainStorm m-files:

              CurrentData
          DateofAgreement
           DefaultSubject
                   Layout
                  Studies
             StudySubject
                 Subjects
          UserCurrentData
             UserDataBase
                  Version
            iUserDataBase

    Matlab has the following Preferences stored in Group 'BrainStorm'

            CurrentData: [1x1 struct]
        DateofAgreement: char    e.g. '18-Sep-2003'
                 Layout: [1x1 struct]
                Studies: [1x1 struct]
           StudySubject: empty
               Subjects: [1x1 struct]
           UserDataBase: [1x3 struct]
                Version: [1x1 struct]
          iUserDataBase: [1x1 double]  e.g. 1

    Below are details on how each Preference is defined and used in BrainStorm

    -----------------  CurrentData  ---------------------

    BrainStorm Preference 'CurrentData' is of class struct
     'CurrentData' has the following fields:
             StudyFile: char    e.g. 'default_data\sphere_brainstormstudy.mat'
           SubjectFile: char    e.g. 'default_subject\sphere_brainstormsubject.mat'

     Help for this preference (help_pref_currentdata) is given as:

       Group 'BrainStorm' Preference 'CurrentData'
       Class Structure, array 1 x 1
       Fields
        .StudyFile Relative filename to the folder containing data
        .SubjectFile Relative filename to the folder with subject information

     The following BrainStorm m-files 'SET' this preference:

        data_manager.m
        database_manager.m

     The following BrainStorm m-files 'GET' this preference:

        database_manager.m
        dataplot_cb.m
        get_user_directory.m
        startup.m

    -----------------  DateofAgreement  ---------------------

    BrainStorm Preference 'DateofAgreement' is of class char

     Help for this preference (help_pref_dateofagreement) is given as:

       Group 'BrainStorm' Preference 'DateofAgreement'
       Class character
       String giving the date copyright notice last agreed to

     The following BrainStorm m-files 'SET' this preference:

        bst_splashscreen.m

     The following BrainStorm m-files 'GET' this preference:

        startup.m

    -----------------  DefaultSubject  ---------------------

     ** BrainStorm Preference 'DefaultSubject' was NOT found in the stored preferences.

     Help for this preference (help_pref_defaultsubject) is given as:

       (add help information)

     The following BrainStorm m-files 'SET' this preference:

     The following BrainStorm m-files 'GET' this preference:

        importdata.m

    -----------------  Layout  ---------------------

    BrainStorm Preference 'Layout' is of class struct
     'Layout' has the following fields:
            DynamicHeight: [1x1 double]  e.g. 0.832713
             DynamicWidth: [1x1 double]  e.g. 0.18395
               MenuMargin: [1x1 double]  e.g. 0.025
            MessageHeight: [1x1 double]  e.g. 0.166636
             MessageWidth: [1x1 double]  e.g. 0.398232
               NameMargin: [1x1 double]  e.g. 0.032
           ScreenPosition: [1x4 double]
               ScreenSize: [1x4 double]
               SideMargin: [1x1 double]  e.g. 0.0075
             StaticHeight: [1x1 double]  e.g. 0.166636
              StaticWidth: [1x1 double]  e.g. 0.601768
                   allpos: [9x4 double]
                  tilepos: [2x2 cell]
                   winpos: [3x4 double]

     Help for this preference (help_pref_layout) is given as:

       Group 'BrainStorm' Preference 'Layout'
       Class structure 1 x 1
       Fields
        .DynamicHeight Height of the vertical toolbar on the right
        .DynamicWidth Width (normalized units)
        .MenuMargin allowance for the filemenu height used in some figs
        .MessageHeight Height of the Message window on the lower left
        .MessageWidth Width
        .NameMargin allowance for the name height used in all windows
        .ScreenPosition
        .ScreenSize
        .SideMargin allowance for thickness of the edging on sides of figures
        .StaticHeight Height of the BrainStorm toolbar at lower right
        .StaticWidth width
        .allpos: [9x4 double]  concatenation of these positions
        .tilepos: [2x2 cell]  the calculated locations of each tile (1,1,1) to (2,2,4)
        .winpos: [3x4 double]

     The following BrainStorm m-files 'SET' this preference:

        bst_layout.m

     The following BrainStorm m-files 'GET' this preference:

        bst_layout.m
        bst_static_taskbar.m
        data_manager.m

    -----------------  Studies  ---------------------

    BrainStorm Preference 'Studies' is of class struct
     'Studies' has the following fields:
             StudyFile: char    e.g. 'default_data\sphere_brainstormstudy.mat'
           StudyFolder: char    e.g. 'default_data'
             StudyName: char    e.g. 'Default Data'

     Help for this preference (help_pref_studies) is given as:

       (add help information)

     The following BrainStorm m-files 'SET' this preference:

        data_manager.m

     The following BrainStorm m-files 'GET' this preference:

        startup.m
        study_editor.m
        subject_editor.m

    -----------------  StudySubject  ---------------------

    BrainStorm Preference 'StudySubject' is of class empty

     Help for this preference (help_pref_studysubject) is given as:

       (add help information)

     The following BrainStorm m-files 'SET' this preference:

     The following BrainStorm m-files 'GET' this preference:

        startup.m

    -----------------  Subjects  ---------------------

    BrainStorm Preference 'Subjects' is of class struct
     'Subjects' has the following fields:
                  Name: char    e.g. 'Default Spherical Subject'
           SubjectFile: char    e.g. 'default_subject\sphere_brainstormsubject.mat'

     Help for this preference (help_pref_subjects) is given as:

       (add help information)

     The following BrainStorm m-files 'SET' this preference:

        data_manager.m

     The following BrainStorm m-files 'GET' this preference:

        importdata.m
        startup.m
        study_editor.m

    -----------------  UserCurrentData  ---------------------

     ** BrainStorm Preference 'UserCurrentData' was NOT found in the stored preferences.

     Help for this preference (help_pref_usercurrentdata) is given as:

       (add help information)

     The following BrainStorm m-files 'SET' this preference:

        dataplot_cb.m

     The following BrainStorm m-files 'GET' this preference:

        get_user_directory.m

    -----------------  UserDataBase  ---------------------

    BrainStorm Preference 'UserDataBase' is of class struct
     'UserDataBase' has the following fields:
            Comment: char    e.g. 'Default Database'
           FILELIST: [1x1 struct]
            STUDIES: char    e.g. 'C:\BrainStorm_2001\default_database'
           SUBJECTS: char    e.g. 'C:\BrainStorm_2001\default_database'

          Structure 'FILELIST' has the following fields:
                StudyFile: char    e.g. 'default_data\sphere_brainstormstudy.mat'
              StudyFolder: char    e.g. 'default_data'
                StudyName: char    e.g. 'Default Data'
                  Subject: [1x1 struct]
                    bytes: [1x1 double]  e.g. 720
                     date: char    e.g. '18-Sep-2003 09:35:20'
                  display: char    e.g. 'default_data | Default.Data | Default.Spherical.Subject'
                    isdir: [1x1 double]  e.g. 0

             Structure 'Subject' has the following fields:
                        Name: char    e.g. 'Default Spherical Subject'
                 SubjectFile: char    e.g. 'default_subject\sphere_brainstormsubject.mat'

     Help for this preference (help_pref_userdatabase) is given as:

       Group 'BrainStorm' Preference 'UserDataBase'
       Class Structure, array 1 x n
       Fields
        .Comment The name of the database
        .SUBJECTS The absolute directory folder where all subject information is kept.
        .STUDIES  The absolute directory folder where all data information is kept.
        .FILELIST The result of BROWSE_STUDY_FOLDER applied to .STUDIES.

     The following BrainStorm m-files 'SET' this preference:

        brainstorm_reset.m
        data_manager.m
        database_manager.m
        make_default_database.m
        startup.m
        study_editor.m

     The following BrainStorm m-files 'GET' this preference:

        brainstorm_reset.m
        data_manager.m
        database_manager.m
        get_user_directory.m
        make_default_database.m
        startup.m
        study_editor.m

    -----------------  Version  ---------------------

    BrainStorm Preference 'Version' is of class struct
     'Version' has the following fields:
              Date: char    e.g. '08-Sep-2003'
              Name: char    e.g. 'BrainStorm Toolbox'
           Release: char    e.g. '(Alpha-Pre)'
           Version: char    e.g. '2.0'

     Help for this preference (help_pref_version) is given as:

       (add help information)

     The following BrainStorm m-files 'SET' this preference:

        startup.m

     The following BrainStorm m-files 'GET' this preference:

        bst_static_taskbar.m

    -----------------  iUserDataBase  ---------------------

    BrainStorm Preference 'iUserDataBase' is of class double

     Help for this preference (help_pref_iuserdatabase) is given as:

       (add help information)

     The following BrainStorm m-files 'SET' this preference:

        brainstorm_reset.m
        data_manager.m
        database_manager.m
        make_default_database.m
        startup.m

     The following BrainStorm m-files 'GET' this preference:

        data_manager.m
        database_manager.m
        get_user_directory.m
        make_default_database.m
        study_editor.m

### Listing of function C:\BrainStorm_2001\Toolbox\help_preference_list.m

    function help_preference_list;
    %HELP_PREFERENCE_LIST - Explain the preferences used by BrainStorm
    % function help_preference_list;
    %Call as a function or type 'help help_preference_list' at the command line
    %
    %Generate this file using the development tool make_preference_list
    %
    %AS OF 24-Sep-2003 15:30:18:
    %
    % -----------------  BrainStorm  ---------------------
    %
    %The following Preferences are found in the BrainStorm m-files:
    %
    %          CurrentData
    %      DateofAgreement
    %       DefaultSubject
    %               Layout
    %              Studies
    %         StudySubject
    %             Subjects
    %      UserCurrentData
    %         UserDataBase
    %              Version
    %        iUserDataBase
    %
    %Matlab has the following Preferences stored in Group 'BrainStorm'
    %
    %        CurrentData: [1x1 struct]
    %    DateofAgreement: char    e.g. '18-Sep-2003'
    %             Layout: [1x1 struct]
    %            Studies: [1x1 struct]
    %       StudySubject: empty
    %           Subjects: [1x1 struct]
    %       UserDataBase: [1x3 struct]
    %            Version: [1x1 struct]
    %      iUserDataBase: [1x1 double]  e.g. 1
    %
    %Below are details on how each Preference is defined and used in BrainStorm
    %
    %
    %-----------------  CurrentData  ---------------------
    %
    %BrainStorm Preference 'CurrentData' is of class struct
    % 'CurrentData' has the following fields:
    %         StudyFile: char    e.g. 'default_data\sphere_brainstormstudy.mat'
    %       SubjectFile: char    e.g. 'default_subject\sphere_brainstormsubject.mat'
    %
    % Help for this preference (help_pref_currentdata) is given as:
    %
    %   Group 'BrainStorm' Preference 'CurrentData'
    %   Class Structure, array 1 x 1
    %   Fields
    %    .StudyFile Relative filename to the folder containing data
    %    .SubjectFile Relative filename to the folder with subject information
    %
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    data_manager.m
    %    database_manager.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    database_manager.m
    %    dataplot_cb.m
    %    get_user_directory.m
    %    startup.m
    %
    %
    %-----------------  DateofAgreement  ---------------------
    %
    %BrainStorm Preference 'DateofAgreement' is of class char
    %
    % Help for this preference (help_pref_dateofagreement) is given as:
    %
    %   Group 'BrainStorm' Preference 'DateofAgreement'
    %   Class character
    %   String giving the date copyright notice last agreed to
    %
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    bst_splashscreen.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    startup.m
    %
    %
    %-----------------  DefaultSubject  ---------------------
    %
    %
    % ** BrainStorm Preference 'DefaultSubject' was NOT found in the stored preferences.
    %
    %
    % Help for this preference (help_pref_defaultsubject) is given as:
    %
    %   (add help information)
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    importdata.m
    %
    %
    %-----------------  Layout  ---------------------
    %
    %BrainStorm Preference 'Layout' is of class struct
    % 'Layout' has the following fields:
    %        DynamicHeight: [1x1 double]  e.g. 0.832713
    %         DynamicWidth: [1x1 double]  e.g. 0.18395
    %           MenuMargin: [1x1 double]  e.g. 0.025
    %        MessageHeight: [1x1 double]  e.g. 0.166636
    %         MessageWidth: [1x1 double]  e.g. 0.398232
    %           NameMargin: [1x1 double]  e.g. 0.032
    %       ScreenPosition: [1x4 double]
    %           ScreenSize: [1x4 double]
    %           SideMargin: [1x1 double]  e.g. 0.0075
    %         StaticHeight: [1x1 double]  e.g. 0.166636
    %          StaticWidth: [1x1 double]  e.g. 0.601768
    %               allpos: [9x4 double]
    %              tilepos: [2x2 cell]
    %               winpos: [3x4 double]
    %
    % Help for this preference (help_pref_layout) is given as:
    %
    %   Group 'BrainStorm' Preference 'Layout'
    %   Class structure 1 x 1
    %   Fields
    %    .DynamicHeight Height of the vertical toolbar on the right
    %    .DynamicWidth Width (normalized units)
    %    .MenuMargin allowance for the filemenu height used in some figs
    %    .MessageHeight Height of the Message window on the lower left
    %    .MessageWidth Width
    %    .NameMargin allowance for the name height used in all windows
    %    .ScreenPosition
    %    .ScreenSize
    %    .SideMargin allowance for thickness of the edging on sides of figures
    %    .StaticHeight Height of the BrainStorm toolbar at lower right
    %    .StaticWidth width
    %    .allpos: [9x4 double]  concatenation of these positions
    %    .tilepos: [2x2 cell]  the calculated locations of each tile (1,1,1) to (2,2,4)
    %    .winpos: [3x4 double]
    %
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    bst_layout.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    bst_layout.m
    %    bst_static_taskbar.m
    %    data_manager.m
    %
    %
    %-----------------  Studies  ---------------------
    %
    %BrainStorm Preference 'Studies' is of class struct
    % 'Studies' has the following fields:
    %         StudyFile: char    e.g. 'default_data\sphere_brainstormstudy.mat'
    %       StudyFolder: char    e.g. 'default_data'
    %         StudyName: char    e.g. 'Default Data'
    %
    % Help for this preference (help_pref_studies) is given as:
    %
    %   (add help information)
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    data_manager.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    startup.m
    %    study_editor.m
    %    subject_editor.m
    %
    %
    %-----------------  StudySubject  ---------------------
    %
    %BrainStorm Preference 'StudySubject' is of class empty
    %
    % Help for this preference (help_pref_studysubject) is given as:
    %
    %   (add help information)
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    startup.m
    %
    %
    %-----------------  Subjects  ---------------------
    %
    %BrainStorm Preference 'Subjects' is of class struct
    % 'Subjects' has the following fields:
    %              Name: char    e.g. 'Default Spherical Subject'
    %       SubjectFile: char    e.g. 'default_subject\sphere_brainstormsubject.mat'
    %
    % Help for this preference (help_pref_subjects) is given as:
    %
    %   (add help information)
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    data_manager.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    importdata.m
    %    startup.m
    %    study_editor.m
    %
    %
    %-----------------  UserCurrentData  ---------------------
    %
    %
    % ** BrainStorm Preference 'UserCurrentData' was NOT found in the stored preferences.
    %
    %
    % Help for this preference (help_pref_usercurrentdata) is given as:
    %
    %   (add help information)
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    dataplot_cb.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    get_user_directory.m
    %
    %
    %-----------------  UserDataBase  ---------------------
    %
    %BrainStorm Preference 'UserDataBase' is of class struct
    % 'UserDataBase' has the following fields:
    %        Comment: char    e.g. 'Default Database'
    %       FILELIST: [1x1 struct]
    %        STUDIES: char    e.g. 'C:\BrainStorm_2001\default_database'
    %       SUBJECTS: char    e.g. 'C:\BrainStorm_2001\default_database'
    %
    %      Structure 'FILELIST' has the following fields:
    %            StudyFile: char    e.g. 'default_data\sphere_brainstormstudy.mat'
    %          StudyFolder: char    e.g. 'default_data'
    %            StudyName: char    e.g. 'Default Data'
    %              Subject: [1x1 struct]
    %                bytes: [1x1 double]  e.g. 720
    %                 date: char    e.g. '18-Sep-2003 09:35:20'
    %              display: char    e.g. 'default_data | Default.Data | Default.Spherical.Subject'
    %                isdir: [1x1 double]  e.g. 0
    %
    %         Structure 'Subject' has the following fields:
    %                    Name: char    e.g. 'Default Spherical Subject'
    %             SubjectFile: char    e.g. 'default_subject\sphere_brainstormsubject.mat'
    %
    % Help for this preference (help_pref_userdatabase) is given as:
    %
    %   Group 'BrainStorm' Preference 'UserDataBase'
    %   Class Structure, array 1 x n
    %   Fields
    %    .Comment The name of the database
    %    .SUBJECTS The absolute directory folder where all subject information is kept.
    %    .STUDIES  The absolute directory folder where all data information is kept.
    %    .FILELIST The result of BROWSE_STUDY_FOLDER applied to .STUDIES.
    %
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    brainstorm_reset.m
    %    data_manager.m
    %    database_manager.m
    %    make_default_database.m
    %    startup.m
    %    study_editor.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    brainstorm_reset.m
    %    data_manager.m
    %    database_manager.m
    %    get_user_directory.m
    %    make_default_database.m
    %    startup.m
    %    study_editor.m
    %
    %
    %-----------------  Version  ---------------------
    %
    %BrainStorm Preference 'Version' is of class struct
    % 'Version' has the following fields:
    %          Date: char    e.g. '08-Sep-2003'
    %          Name: char    e.g. 'BrainStorm Toolbox'
    %       Release: char    e.g. '(Alpha-Pre)'
    %       Version: char    e.g. '2.0'
    %
    % Help for this preference (help_pref_version) is given as:
    %
    %   (add help information)
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    startup.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    bst_static_taskbar.m
    %
    %
    %-----------------  iUserDataBase  ---------------------
    %
    %BrainStorm Preference 'iUserDataBase' is of class double
    %
    % Help for this preference (help_pref_iuserdatabase) is given as:
    %
    %   (add help information)
    %
    % The following BrainStorm m-files 'SET' this preference:
    %
    %    brainstorm_reset.m
    %    data_manager.m
    %    database_manager.m
    %    make_default_database.m
    %    startup.m
    %
    % The following BrainStorm m-files 'GET' this preference:
    %
    %    data_manager.m
    %    database_manager.m
    %    get_user_directory.m
    %    make_default_database.m
    %    study_editor.m
    %

    %<autobegin> ---------------------- 26-May-2004 11:30:39 -----------------------
    % --------- Automatically Generated Comments Block Using AUTO_COMMENTS ---------
    %
    % CATEGORY: Help
    %
    % At Check-in: $Author: Mosher $  $Revision: 7 $  $Date: 5/26/04 9:59a $
    %
    % This software is part of BrainStorm Toolbox Version 2.0 (Alpha) 24-May-2004
    %
    % Principal Investigators and Developers:
    % ** Richard M. Leahy, PhD, Signal & Image Processing Institute,
    %    University of Southern California, Los Angeles, CA
    % ** John C. Mosher, PhD, Biophysics Group,
    %    Los Alamos National Laboratory, Los Alamos, NM
    % ** Sylvain Baillet, PhD, Cognitive Neuroscience & Brain Imaging Laboratory,
    %    CNRS, Hopital de la Salpetriere, Paris, France
    %
    % See BrainStorm website at http://neuroimage.usc.edu for further information.
    %
    % Copyright (c) 2004 BrainStorm by the University of Southern California
    % This software distributed  under the terms of the GNU General Public License
    % as published by the Free Software Foundation. Further details on the GPL
    % license can be found at http://www.gnu.org/copyleft/gpl.html .
    %
    % FOR RESEARCH PURPOSES ONLY. THE SOFTWARE IS PROVIDED "AS IS," AND THE
    % UNIVERSITY OF SOUTHERN CALIFORNIA AND ITS COLLABORATORS DO NOT MAKE ANY
    % WARRANTY, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF
    % MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, NOR DO THEY ASSUME ANY
    % LIABILITY OR RESPONSIBILITY FOR THE USE OF THIS SOFTWARE.
    %<autoend> ------------------------ 26-May-2004 11:30:39 -----------------------

    % CATEGORY: Help

    helptext = help(mfilename);

    helpwin(mfilename);

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