%==================================================================
%==================================================================
clear all;
%
%	BatchIAPS.m
%   This software is protected by german copyright and international treaties.             
%   Copyright 2004 Markus Junghöfer & Peter Peyk. All Rights Reserved.                     
%                                                                                          
%   THIS SOFTWARE AND DOCUMENTATION IS PROVIDED "AS IS," AND COPYRIGHT HOLDERS MAKE        
%   NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO,    
%   WARRANTIES OF MERCHANTABILITY OR FITNESS FOR ANY PARTICULAR PURPOSE OR THAT THE USE    
%   OF THE SOFTWARE OR DOCUMENTATION WILL NOT INFRINGE ANY THIRD PARTY PATENTS, COPYRIGHTS,
%   TRADEMARKS OR OTHER RIGHTS. COPYRIGHT HOLDERS WILL NOT BE LIABLE FOR ANY DIRECT,       
%   INDIRECT, SPECIAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF ANY USE OF THE SOFTWARE      
%   OR DOCUMENTATION.                                                                      
%
%	Markus Junghoefer	[1999]
%
%
%	Function definition
%	
%
%
%
%
%=================================================================

%==================================================================

TRStatus=1;
[DefFilePath]=SetDefPath('r','*.RAW')
[NNetFiles,RawFileMat,NonUse,BatchFilePath]=ReadFileNames([],DefFilePath,'Choose NetStation file:');
if NNetFiles==0; return; end
SetDefPath('w',BatchFilePath);
[ch_UseOverAllGainFile]=IfEmptyInputBo('Do you want to use one special gain and one special zero file ?',[],[],0);

if ch_UseOverAllGainFile
	[GainFile,GainPath,GainFilePath]=ReadFilePath([],'*.Gain','Please choose the over all gain file:');
	[ZeroFile,ZeroPath,ZeroFilePath]=ReadFilePath([],'*.Zero','Please choose the over all zero file:');
	if GainFile==0; GainFile=[]; GainPath=[]; GainFilePath=[]; end
	if ZeroFile==0; ZeroFile=[]; ZeroPath=[]; ZeroFilePath=[]; end
else
	GainFilePath=[];
	ZeroFilePath=[];
end


%===============TransNetGeoHistTmp====================================
% [EGISFileMat,NetFileMat]=TransNetGeoHistNew(NetFileMat,TRStatus,...
% PreTrig,PostTrig,ReTrig,GainFilePath,ZeroFilePath,OldZeroVersion,...
% NGainZeroString,SpecCondVec,NStep,NDefTrials,SimpleTrig,DSample,DMeanSampleStatus)
[EGISFileMat]=TransNetGeoHist256(RawFileMat,TRStatus,19,20,1,GainFilePath,ZeroFilePath,0,9)
%===============CalcAutoEditMat ohne avg ref EEG und ohne flat====================================
%[AEMFilePathMat]=CalcAutoEditMat(FileMat,TimeStatusVec,ch_CalcAvgRef,ch_UseSpecChan,...
%ch_CalcBaseline,BaseStartPoint,BaseEndPoint,ch_ChooseTimeInd,LFlatWin,ch_CalcFlaMat,ch_UseAWE);

[AEMFilePathMat]=CalcAutoEditMat(EGISFileMat,[],0,[],1,1,40,1,10,0,0);

%======Such nach schlechten Kanaelen ==================================
%FindBadChan(AEMFilePathMat,AWELimesFac,BatchStatus);
FindBadChan(AEMFilePathMat,3,1);

%======Such nach schlechten trials ==================================
% [AWEFileMat]=FindBadChanTrial(FilePathMat,AWELimesFac,BatchStatus);
FindBadChanTrial(AEMFilePathMat,2.5,1);
 
%===============CalcAutoEditMat mit avg ref EEG und mit flat====================================
%[AEMFilePathMat]=CalcAutoEditMat(FileMat,TimeStatusVec,ch_CalcAvgRef,ch_UseSpecChan,...
%ch_CalcBaseline,BaseStartPoint,BaseEndPoint,ch_ChooseTimeInd,LFlatWin,ch_CalcFlaMat,ch_UseAWE);

[AEMFilePathMat]=CalcAutoEditMat(EGISFileMat,[],1,1,1,1,40,0,8,1,1);
