%	BatchConny

%   This software is protected by german copyright and international treaties.             
%   Copyright 2004 Markus Junghöfer & Peter Peyk. All Rights Reserved.                     
%                                                                                          
%   THIS SOFTWARE AND DOCUMENTATION IS PROVIDED "AS IS," AND COPYRIGHT HOLDERS MAKE        
%   NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO,    
%   WARRANTIES OF MERCHANTABILITY OR FITNESS FOR ANY PARTICULAR PURPOSE OR THAT THE USE    
%   OF THE SOFTWARE OR DOCUMENTATION WILL NOT INFRINGE ANY THIRD PARTY PATENTS, COPYRIGHTS,
%   TRADEMARKS OR OTHER RIGHTS. COPYRIGHT HOLDERS WILL NOT BE LIABLE FOR ANY DIRECT,       
%   INDIRECT, SPECIAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF ANY USE OF THE SOFTWARE      
%   OR DOCUMENTATION.




clear all;

global NsFileMat
%
%=================================================================
PreTrig=199;
PostTrig=800;
DownSample=10;
BaseStart=1;
BaseEnd=(PreTrig+1).*DownSample;
%==================================================================
[DefFilePath]=SetDefPath('r','*.cnt')
[NNsFiles,NsFileMat,NonUse,BatchFilePath]=ReadFileNames([],DefFilePath,'Choose .cnt file(s):')
if NNsFiles==0; return; end
SetDefPath('w',BatchFilePath);

[FiltNsFileMat]=FiltNeuroscanFiles(NsFileMat,20);

[EgisFileMat,ConFileMat] = NeuroScan2Egis(NsFileMat,PreTrig,PostTrig,0,DownSample)

[AEMFilePathMat]=CalcAutoEditMat(EgisFileMat,[],0,[],1,BaseStart,BaseEnd,1,10,0,0);

%======Such nach schlechten Kanaelen ==================================
%FindBadChan(AEMFilePathMat,AWELimesFac,BatchStatus);
FindBadChan(AEMFilePathMat,3,1);

%======Such nach schlechten trials ==================================
% [AWEFileMat]=FindBadChanTrial(FilePathMat,AWELimesFac,BatchStatus);
FindBadChanTrial(AEMFilePathMat,2.5,1);
 
%===============CalcAutoEditMat mit avg ref EEG und mit flat====================================
%[AEMFilePathMat]=CalcAutoEditMat(FileMat,TimeStatusVec,ch_CalcAvgRef,ch_UseSpecChan,...
%ch_CalcBaseline,BaseStartPoint,BaseEndPoint,ch_ChooseTimeInd,LFlatWin,ch_CalcFlaMat,ch_UseAWE);
[AEMFilePathMat]=CalcAutoEditMat(EgisFileMat,[],1,1,1,BaseStart,BaseEnd,0,8,1,1);
