[Master Index]
Index for Toolbox in BrainStorm 2.0 (Alpha)
Produced by color_mat2html, a customized BrainStorm 2.0 (Alpha) version of mat2html on Tue Oct 12 12:05:14 2004
Cross-Directory links are: ON
Contents
BrainStorm Toolbox
Version 2.0 (Alpha) 12-Oct-2004
Contents Generated by make_contents on 12-Oct-2004 11:54:29
Files Sorted first by Category, then alphabetical, listed with first help line.
A * indicates the H1 line begins with the filename.
Category: Data Processing
bst_extractmarkersctf.m * - Extract signal block from a .ds CTF data set
bst_readmarkerfilectf.m * - read_markerf reads the CTF markerfile MarkerFile.mrk
covariance_plots.fig GUI figure for covariance_plots.m
covariance_plots.m * - M-file for covariance_generator, covariance_plots
ds2brainstorm.m * - Convert a DS CTF dataset into BrainStorm format
eeg2bs.m * - (fnamein,fnameout,type,channel)
extract_channels.m * - Extract the channels to be used in this particular run
extract_ctf_markers.m * - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
load_fif_apos.m * - Load in position information from Neuromag 122 ".apos" file
load_fif_asc.m * - Load data from Neuromag 122 .fif file converted to ascii
load_smf.m * - Load a simply written SMF file into the faces vertices structure
meg4write.m * - WRITE CTF MEG4 file format
mesh2brainstorm.m * - Import .mesh tessellation files (BrainVisa interchange)
readdsgl.m * - Loads a BrainSuite .dsgl format tessellation file.
readmarkerfile_ctf.m * - Read marker information from CTF MarkerFile.mrk
save_smf.m * - Save out a file in a simple form of the SMF format
tri2brainstorm.m * - Read .tri file into BrainStorm format
Category: Database Management
browse_study_folder.m * - Find all *brainstormstudy.mat files in a directory tree
eeg_load_scan3avg.m * - Read a NeuroScan 3.x AVG File
elpos2bs.m * - this function converts electrode position files into BrainStorm Channel format
find_mfiles.m * - Find m-files that open a particular figure handle or the GCF
help_manager.fig GUI figure for help_manager.m, bst_static_taskbar.m
help_manager.m * - Application M-file for help_manager.fig
load_brainstorm_file.m * - load or try to find and load the BrainStorm file.
make_default_database.m * - Confirm or Create a default database, default study, default subject
make_default_study.m * - Create simulated default data and link to a simulated subject
make_default_subject.m * - Make a brainstormsubject and simulated MRI in a folder
phantom_channel_assignment.fig GUI figure for phantom_channel_assignment.m, tess_align_tool.m
phantom_channel_assignment.m * - Application M-file for phantom_channel_assignment.fig
read_besa.m * - (overwrite succinct one line summary here)
Category: Forward Modeling
bem_gain.m * - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
bem_kernel.m * - computes kernel matrices for EEG and MEG
bem_xfer.m * - Computation of the MEG and/or EEG BEM transfer matrices
berg.m * - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
bestfitsph.m * - Find best fitting sphere
bst_headmodeler.m * - Solution to the MEG/EEG forward problem
carto_sensors.m * - (Rcoils,v);
eeg_bem.m * - Calculate the electric potential , BEM approach, arbitrary orientation
eeg_sph.m * - Calculate the electric potential , spherical head, arbitrary orientation
gain_interp.m * - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
get_gain.m * - Get a set of source foward fields from a .bin gain matrix file
good_channel.m * - Extract channels of a given type
gridmaker.m * - 3D regular gridding of surface envelope
hrow_linear.m * - Compute row in BEM geometry matrix for linear collocation
kl_galerkin.m * - Galerking kernel for BEM of linear model
kl_gram.m * - Kernel computation used in bem_xfer
meg_bem.m * - Calculate the mag field, BEM approach, arbitrary orientation
os_meg.m * - Calculate the (overlapping) sphere models for MEG
overlapping_sphere.m * - Create overlapping spheres for E/MEG channels.
overlapping_sphere_fmins.m * - for use with OVERLAPPING_SPHERE
read_gain.m * - Extract parts or a compete gain matrix from .bin binay gain file
sensor_122.m * - Return the Neuromag 122 information
sensor_axial.m * - Generate axial gradiometers
sensor_planar.m * - Generate planar gradiometers
sensor_ring.m * - Generate rings of sensors about a sphere roughly uniformly spaced.
sensor_spacing.m * - generate sites roughly evenly spaced about a hemisphere.
solid_angle2.m * - Solid angle of a viewed triangle
source_grid.m * - generate variable grid of possible source locations
source_grids.m * - Generate source grids for parametric model searches
source_tess.m * - generate variable grid of possible source locations
tesselate.m * - tesselate based on the sensor_ring program
trans_matrix.m * - calculate BEM transfer matrices for EEG and MEG
tri_interp.m * - Compute the interpolation matrix from a cortical tessellation to the MRI volume
weighting_scalar.m * - For use with Overlapping Sphere
zhang_fit.m * - Compute 'Berg' parameters for EEG multilayer sphere
Category: GUI and Related
bem_param_select.fig GUI figure for headmodeler_gui.m
bst_color_scheme.m * - apply the BrainStorm color, font, size scheme to the figure
bst_layout.m * - Manage all BST windows in a standard layout
bst_message_window.fig GUI figure for bst_message_window.m, avw2brainstorm.m, bem_gain.m, and others
bst_message_window.m * - Application M-file for bst_message_window.fig, with NON CALLBACKS
bst_splashscreen.fig GUI figure for bst_splashscreen.m, bst_static_taskbar.m
bst_splashscreen.m * - GUI app for license information and agreement
bst_static_taskbar.fig GUI figure for bst_static_taskbar.m, bst_wavedata_display.m, data_manager.m, and others
bst_static_taskbar.m * - BrainStorm's primary taskbar always visible
bst_win_manager.m * - GUI Window management for BrainStorm
channel_select.fig GUI figure for dataplot_cb.m
data_manager.fig GUI figure for data_manager.m, bst_static_taskbar.m, extract_channels.m, and others
data_manager.m * - Edit/select database, subjects, studies, datasets, build headmodels, import data.
data_selector_cb.m * - Callback function to setup and execute inverse techniques
database_manager.fig GUI figure for database_manager.m, data_manager.m
database_manager.m * - GUI to edit the User Databases and select one
dataplot.fig GUI figure for bst_imaging_display.m, bst_static_taskbar.m, bst_wavedata_display.m, and others
dataplot_cb.m * - : Callback switchyard for the DATAViewer Tool
file_selection_win.fig GUI figure for file_selection_win.m, bst_mriviewer.m, dataplot_cb.m, and others
file_selection_win.m * - Application M-file for file_selection_win.fig
generic_listbox_win.fig GUI figure for importdata.m, subject_editor.m
headmodeler_gui.fig GUI figure for headmodeler_gui.m, bst_static_taskbar.m, data_manager.m, and others
headmodeler_gui.m * - Application M-file to build head models
importdata.fig GUI figure for importdata.m, data_manager.m, ds2brainstorm.m, and others
importdata.m * - Case Switchyard for importing data from major MEG and EEG systems
layout_manager.fig GUI figure for layout_manager.m, bst_static_taskbar.m
layout_manager.m * - Application M-file to manage the window layout
least_squares_parameters.fig GUI figure for data_selector_cb.m, least_squares_parameters_cb.m, parametric_estimation.m
listbox_win.fig GUI figure for importdata.m, subject_editor.m
listchan.fig GUI figure for dataplot_cb.m
logobrainstorm.jpg Figure file
makeuswait.m * - change the figure pointer according to action
map_single.fig GUI figure for dataplot_cb.m
mri_parameters.fig GUI figure for mri_parameters.m, bst_mriviewer.m
mri_parameters.m * - Application M-file for mri_parameters.fig
nowzooming.m * - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
pcs_params.fig GUI figure for pcs_params.m, bst_mriviewer.m, mri_read_tool.m
pcs_params.m * - Application M-file to set the parameters of the patient coordinates
set_dataviewing_parameters.fig GUI figure for dataplot_cb.m
simulator.fig GUI figure for simulator.m, bst_static_taskbar.m, make_default_study.m, and others
simulator.m * - Application M-file for simulator.fig
simulator_mri.fig GUI figure for simulator_mri.m, bst_static_taskbar.m, make_default_subject.m
simulator_mri.m * - Application M-file to make a simulated spherical MRI
study_editor.fig GUI figure for study_editor.m, data_manager.m, importdata.m
study_editor.m * - GUI to edit the BrainStorm Study information, case switchyard
subject_editor.fig GUI figure for subject_editor.m, bst_static_taskbar.m, data_manager.m, and others
subject_editor.m * - GUI to edit the BrainStorm Subject information, case switchyard
tess_align_tool.fig GUI figure for tess_align_tool.m, subject_editor.m
tess_align_tool.m * - Application M-file for tess_align_tool.fig
tessellation_window.fig GUI figure for bst_imaging_display.m, dataplot_cb.m, manage_corticalscouts.m, and others
zscore_gui.fig GUI figure for zscore_gui.m, dataplot_cb.m
zscore_gui.m * - : management of zscore visualization
Category: Help
contents.m This Contents File
help_data_bststudy.m * - Information on database files of type 'bststudy'
help_data_bstsubject.m * - Information on database files of type 'bstsubject'
help_data_channel.m * - Information on database files of type 'channel'
help_data_data.m * - Information on database files of type 'data'
help_data_headmodel.m * - Information on database files of type 'headmodel'
help_data_image.m * - Information on database files of type 'image'
help_data_raw.m * - Information on database files of type 'raw'
help_data_results.m * - Information on database files of type 'results'
help_data_tess.m * - Information on database files of type 'tess'
help_data_triconn.m * - Information on database files of type 'triconn'
help_data_vertconn.m * - Information on database files of type 'vertconn'
help_database_list.m * - Explain the database used by BrainStorm
help_editing_brainstorm.m * - Information on how to update and edit your version of BrainStorm
help_fig_bem_param_select.m * - Information on figure file 'bem_param_select'
help_fig_bst_message_window.m * - Information on figure file 'bst_message_window'
help_fig_bst_splashscreen.m * - Information on figure file 'bst_splashscreen'
help_fig_bst_static_taskbar.m * - Information on figure file 'bst_static_taskbar'
help_fig_channel_select.m * - Information on figure file 'channel_select'
help_fig_chi_pdf_fit.m * - Information on figure file 'chi_pdf_fit'
help_fig_covariance_generator.m * - Information on figure file 'covariance_generator'
help_fig_covariance_plots.m * - Information on figure file 'covariance_plots'
help_fig_data_manager.m * - Information on figure file 'data_manager'
help_fig_data_selector.m * - Information on figure file 'data_selector'
help_fig_database_manager.m * - Information on figure file 'database_manager'
help_fig_dataplot.m * - Information on figure file 'dataplot'
help_fig_generic_listbox_win.m * - Information on figure file 'generic_listbox_win'
help_fig_headmodeler_gui.m * - Information on figure file 'headmodeler_gui'
help_fig_help_manager.m * - Information on figure file 'help_manager'
help_fig_importdata.m * - Information on figure file 'importdata'
help_fig_layout_manager.m * - Information on figure file 'layout_manager'
help_fig_least_squares_parameters.m * - Information on figure file 'least_squares_parameters'
help_fig_listbox_win.m * - Information on figure file 'listbox_win'
help_fig_listchan.m * - Information on figure file 'listchan'
help_fig_manage_corticalscouts.m * - Information on figure file 'manage_corticalscouts'
help_fig_map_single.m * - Information on figure file 'map_single'
help_fig_mapping.m * - Information on figure file 'mapping'
help_fig_markers_select.m * - Information on figure file 'markers_select'
help_fig_minnorm_parameters.m * - Information on figure file 'minnorm_parameters'
help_fig_mri_read_tool.m * - Information on figure file 'mri_read_tool'
help_fig_mri_scan_params.m * - Information on figure file 'mri_scan_params'
help_fig_mribox.m * - Information on figure file 'mribox'
help_fig_parametric_estimation.m * - Information on figure file 'parametric_estimation'
help_fig_pcs_params.m * - Information on figure file 'pcs_params'
help_fig_rap_music_parameters.m * - Information on figure file 'rap_music_parameters'
help_fig_rap_parameters.m * - Information on figure file 'rap_parameters'
help_fig_results_time_series.m * - Information on figure file 'results_time_series'
help_fig_results_update_gui.m * - Information on figure file 'results_update_gui'
help_fig_results_visualization.m * - Information on figure file 'results_visualization'
help_fig_select_folder.m * - Information on figure file 'select_folder'
help_fig_set_dataviewing_parameters.m * - Information on figure file 'set_dataviewing_parameters'
help_fig_set_sourceviewing_parameters.m * - Information on figure file 'set_sourceviewing_parameters'
help_fig_show_signal_decomposition.m * - Information on figure file 'show_signal_decomposition'
help_fig_simulator.m * - Information on figure file 'simulator'
help_fig_simulator_mri.m * - Information on figure file 'simulator_mri'
help_fig_sourceimaging.m * - Information on figure file 'sourceimaging'
help_fig_sourceimaging_parameters.m * - Information on figure file 'sourceimaging_parameters'
help_fig_study_editor.m * - Information on figure file 'study_editor'
help_fig_subject_editor.m * - Information on figure file 'subject_editor'
help_fig_taskbar.m * - Information on figure file 'taskbar'
help_fig_tessellation_handler.m * - Information on figure file 'tessellation_handler'
help_fig_tessellation_select.m * - Information on figure file 'tessellation_select'
help_fig_tessellation_window.m * - Information on figure file 'tessellation_window'
help_fig_timeseries.m * - Information on figure file 'timeseries'
help_fig_view_manager.m * - Information on figure file 'view_manager'
help_fig_visu_maps.m * - Information on figure file 'visu_maps'
help_fig_wave_single.m * - Information on figure file 'wave_single'
help_fig_web_pages.m * - Information on figure file 'web_pages'
help_fig_zscore_gui.m * - Information on figure file 'zscore_gui'
help_figure_list.m * - Explain the figures used by BrainStorm
help_pref_currentdata.m * - Preference information on structure of 'CurrentData'
help_pref_dateofagreement.m * - Preference information on structure of 'DateofAgreement'
help_pref_defaultsubject.m * - Preference information on structure of 'DefaultSubject'
help_pref_iuserdatabase.m * - Preference information on structure of 'iUserDataBase'
help_pref_layout.m * - Preference information on structure of 'Layout'
help_pref_studies.m * - Preference information on structure of 'Studies'
help_pref_studysubject.m * - Preference information on structure of 'StudySubject'
help_pref_subjects.m * - Preference information on structure of 'Subjects'
help_pref_usercurrentdata.m * - Preference information on structure of 'UserCurrentData'
help_pref_userdatabase.m * - Preference information on structure of 'UserDataBase'
help_pref_version.m * - Preference information on structure of 'Version'
help_preference_list.m * - Explain the preferences used by BrainStorm
montreal_data_create.m * - Read landmarks from the Montreal Phantom and create simulated data
readme.m * - What's New in Each Revision of BrainStorm 2.0 (Alpha)
Category: Inverse Modeling
bst_sourceimaging.m * - Command line call to source imaging routines
bstscript_ForwardInverse_basic.m * - Basic Head Modelling and Source Imaging BrainStorm Script
data_selector.fig GUI figure for bst_sourceimaging.m, data_selector_cb.m, parametric_estimation.m
lcmvbf.fig GUI figure for lcmvbf.m, bst_sourceimaging.m, dataplot_cb.m
lcmvbf.m * - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
least_squares_fit.m * - multiple dipole fit using fminsearch
least_squares_parameters_cb.m * - least_squares GUI setup and execution
minnorm.m * - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
minnorm_parameters_cb.m * - Minimum Norm GUI setup and execution
muopt.m * - Quasi-optimality criterion for choosing the regularization parameter.
parametric_estimation.fig GUI figure for parametric_estimation.m, bst_static_taskbar.m, dataplot_cb.m, and others
parametric_estimation.m * - GUI for selecting data segments and subspaces prior to estimation
rap_music_parameters.fig GUI figure for rap_music_parameters.m, bst_static_taskbar.m, dataplot_cb.m, and others
rap_music_parameters.m * - Application M-file for rap_music_parameters.fig
rapmusic_gui.m * - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
regcheck.m * - Check the regularization tag
regsubspace.m * - Determine the subspace based on the regularization method
subcorr_gui.m * - Subcorr function custom to the gui features
Category: Utility - General
avw2brainstorm.m * - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
brainstorm.m * - Go to the BrainStorm home web page
brainstorm_reset.m * - Clear Matlab BrainStorm preferences, remove default data
dip.m * - UNKNOWN, move to archive?
engstr.m * - create a string for the number in engineering format
find_brainstorm_files.m * - Find BrainStorm subjects or study files, create Menu
find_brainstorm_structure.m * - Find all of the available files with a subject or study
find_subdir.m * - Find all subdirectories in a BrainStorm path
genpath2cell.m * - convert path or generated path string into cell array
get_channel.m * - Get the Channel information associated with a particular data file
get_user_directory.m * - Get the user's root directory information
ginput2.m * - Graphical input from mouse.
grayish.m * - % gray out the lower end of a spectrum for less severe palette
load_raw.m * - Read a BrainStorm "raw" format (.txt or .raw) matrix
make_contents.mat Mat-file
mby3check.m * - Check to see if matrix is m by 3 or 3 by m.
mby6check.m * - Check to see if matrix is m by 6 or 6 by m.
meg4read.m * - READ CTF MEG4 file format
mutincomp.m * - Mutual incompatibility among checkboxes and radiobuttons
norcol.m * - (French) squared sum of each column in a matrix
norlig.m * - (French) Norm of the rows of a matrix
offset.m * - each column in inmat such that a plot(outmat) looks good.
qslim.m * - Mesh simplification, wrapper function for Garland's QSLIM executable program
read_ctf_mri.m * - Read CTF MRI format (Version 2.1)
readdfs.m * - (overwrite succinct one line summary here)
readRaw.m * - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
save_fieldnames.m * - Save just the fieldnames of a structure to a mat-file
save_raw.m * - Save out a matrix in BrainStorm "raw" format, based on extension
select_folder.fig GUI figure for select_folder.m, database_manager.m
select_folder.m * - Application M-file for bst_SelectFolder.fig
str2mat0.m * - (Deprecated) Form text matrix from individual strings.
str_repeater.m * - Repeat string format and separator to display data
vec.m * - Lexicographical ordering of a matrix, A(:).
web_pages.fig GUI figure for web_pages.m, bst_static_taskbar.m
web_pages.m * - Listbox of relevant BrainStorm web pages and email addresses
windclf.m * - Reset and clear the figure, retaining the NAME property
windfind.m * - Find or create a particular window using it's NAME property
Category: Utility - Numeric
aic_mdl.m * - Calculate Information Theoretic Criteria for data dimensionality
blk_diag.m * - Make or extract a sparse block diagonal matrix
blk_lex.m * - Lexicographically order the submatrices in A
brainstorm_filt.m * - Zero-phase filter dedicated to multi-channel MEG and EEG data
carto_sph.m * - (sensloc,v,center)
chi_pdf_fit.fig GUI figure with unknown calls
closest.m * - Find point in one array closest to point in another array
colnorm.m * - Calculate L2 norm for each column of a matrix and normalize
covariance_generator.fig GUI figure with unknown calls
cross_mat.m * - Sparse cross product matrix good for matrix equivalent operation
crossprod.m * - Cross product between two sets, each set with three columns
dist_sph.m * - FMINS distance function used to minimize the fit to a sphere
dlegpoly.m * - Evaluate the first N Legendre polynomials
dotprod.m * - Dot product of two vectors (deprecated)
embedding.m * - computing the approximate embedding surface
fidufit.m * - (overwrite succinct one line summary here)
findclosest.m * - Find entries of closest elements between two vectors
fronorm.m * - Fast calculation of the Frobenius Norm of a Matrix
hanning_window.m * - Calculate the hanning window function for n points
inorcol.m * - Compute the (pseudo)inverse of the column norms of matrix Mat
modulo.m * - Compute the modulo
mri2scs.m * - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
ray_intersect.m * - find intersection of a ray with a set of faces
rownorm.m * - Calculate the L2 norm of each row of a matrix
scs2mri.m * - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
shepards.m * - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
sort_key.m * - Sort with column keys
svd0.m * - Economy SVD in both U and V, S returned sparse diagonal
tessellation_stats.m * - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
transform.m * - Transform coordinates between PCS and MRI
tri_area.m * - Find areas of all triangles
Category: Visualization
bst_imaging_display.m * - : display utility for cortical distributed source imaging
bst_mriviewer.fig GUI figure for bst_mriviewer.m, bst_static_taskbar.m, dataplot_cb.m, and others
bst_mriviewer.m * - Application M-file for bst_mriviewer.fig
bst_wavedata_display.m * - Various ways of loooking at time series
c_activ.m * - Finding a colormap to code deepness and activation
catci.m * - computing color coding for activation on the vertices
contraste.m * - computing the colormap coding deepness
curvature_cortex.m * - calculates cortex curvature
depthgauge.m * - Make a depthgauge for measuring depth
faces_connectivity.m * - Generate the connections of faces to a vertex
filterGUI.fig GUI figure for filterGUI.m, dataplot_cb.m
filterGUI.m * - M-file for filterGUI.fig
ihot.mat Mat-file
interp_mail.m * - (French) Interpolate coordinates of the "maillage"
leaflet.m * - (overwrite succinct one line summary here)
leaflet.mat Mat-file
load_BsTMRI.m * - Load BrainStorm MRI format
manage_corticalscouts.fig GUI figure for manage_corticalscouts.m, dataplot_cb.m
manage_corticalscouts.m * - Application M-file for manage_corticalscouts.fig
mapping.fig GUI figure for bst_imaging_display.m, bst_mriviewer.m, bst_wavedata_display.m, and others
markers_select.fig GUI figure with unknown calls
mri_read_tool.fig GUI figure for mri_read_tool.m, bst_static_taskbar.m, make_default_subject.m, and others
mri_read_tool.m * - AOS Version Application M-file to read in MRI and manipulate
mribox.fig GUI figure for mritool_cb.m
mritool_cb.m * - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
patch_swell.m * - enlarge a patch by appending the next set of adjacent vertices
plot3d.m * - 'plot3' the given three column data
plot_dipole.m * - (r,n,s,c)
plot_patch.m * - plots a vertex or face and its neighbors
results_time_series.fig GUI figure for results_time_series.m, rapmusic_gui.m
results_time_series.m * - Application M-file for results_time_series.fig
results_update.m * - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
results_update_gui.fig GUI figure for results_update.m
results_visualization.fig GUI figure for results_visualization.m, bst_static_taskbar.m, rapmusic_gui.m, and others
results_visualization.m * - Application M-file View the results of source modeling
separation.m * - Splitting the brain into 2 parts
set_sourceviewing_parameters.fig GUI figure for set_sourceviewing_parameters.m, dataplot_cb.m
set_sourceviewing_parameters.m * - Application M-file for set_sourceviewing_parameters.fig
show_signal_decomposition.fig GUI figure for show_signal_decomposition.m
show_signal_decomposition.m * - Application M-file for show_signal_decomposition.fig
smooth_cortex.m * - Smoothes tesselation
sourceimaging.fig GUI figure for sourceimaging.m, bst_sourceimaging.m, bst_static_taskbar.m, and others
sourceimaging.m * - Main switch to source imaging routines
sourceimaging_parameters.fig GUI figure with unknown calls
tessellation_handler.fig GUI figure for tessellation_handler.m, set_sourceviewing_parameters.m
tessellation_handler.m * - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
tessellation_outwards.m * - Ensure that tessellation ordering is "outwards"
togglebuttoncolor.m * - : change button color of toggle button
toggleface.m * - Toggle the faces and edges as invisible
togglelight.m * - toggle the lighting flat or phong
vertices_connectivity.m * - Generate the connections between vertices
view_surface.m * - Convenient function to consistently plot surfaces
visu_maps.fig GUI figure with unknown calls
warp_everything_bst.m WARP_EVERYTHING - (summary line here)
wave_single.fig GUI figure with unknown calls
Category: All Alphabetical
aic_mdl.m * - Calculate Information Theoretic Criteria for data dimensionality
avw2brainstorm.m * - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
bem_gain.m * - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
bem_kernel.m * - computes kernel matrices for EEG and MEG
bem_param_select.fig GUI figure for headmodeler_gui.m
bem_xfer.m * - Computation of the MEG and/or EEG BEM transfer matrices
berg.m * - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
bestfitsph.m * - Find best fitting sphere
blk_diag.m * - Make or extract a sparse block diagonal matrix
blk_lex.m * - Lexicographically order the submatrices in A
brainstorm.m * - Go to the BrainStorm home web page
brainstorm_filt.m * - Zero-phase filter dedicated to multi-channel MEG and EEG data
brainstorm_reset.m * - Clear Matlab BrainStorm preferences, remove default data
browse_study_folder.m * - Find all *brainstormstudy.mat files in a directory tree
bst_cactivcmap.mat Mat-file
bst_color_scheme.m * - apply the BrainStorm color, font, size scheme to the figure
bst_extractmarkersctf.m * - Extract signal block from a .ds CTF data set
bst_headmodeler.m * - Solution to the MEG/EEG forward problem
bst_imaging_display.m * - : display utility for cortical distributed source imaging
bst_layout.m * - Manage all BST windows in a standard layout
bst_message_window.fig GUI figure for bst_message_window.m, avw2brainstorm.m, bem_gain.m, and others
bst_message_window.m * - Application M-file for bst_message_window.fig, with NON CALLBACKS
bst_mriviewer.fig GUI figure for bst_mriviewer.m, bst_static_taskbar.m, dataplot_cb.m, and others
bst_mriviewer.m * - Application M-file for bst_mriviewer.fig
bst_readmarkerfilectf.m * - read_markerf reads the CTF markerfile MarkerFile.mrk
bst_sourceimaging.m * - Command line call to source imaging routines
bst_splashscreen.fig GUI figure for bst_splashscreen.m, bst_static_taskbar.m
bst_splashscreen.m * - GUI app for license information and agreement
bst_static_taskbar.fig GUI figure for bst_static_taskbar.m, bst_wavedata_display.m, data_manager.m, and others
bst_static_taskbar.m * - BrainStorm's primary taskbar always visible
bst_wavedata_display.m * - Various ways of loooking at time series
bst_win_manager.m * - GUI Window management for BrainStorm
bstscript_ForwardInverse_basic.m * - Basic Head Modelling and Source Imaging BrainStorm Script
c_activ.m * - Finding a colormap to code deepness and activation
carto_sensors.m * - (Rcoils,v);
carto_sph.m * - (sensloc,v,center)
catci.m * - computing color coding for activation on the vertices
channel_select.fig GUI figure for dataplot_cb.m
chi_pdf_fit.fig GUI figure with unknown calls
closest.m * - Find point in one array closest to point in another array
colnorm.m * - Calculate L2 norm for each column of a matrix and normalize
common_vertices.m M-file has no help text
contents.m This Contents File
contraste.m * - computing the colormap coding deepness
covariance_generator.fig GUI figure with unknown calls
covariance_plots.fig GUI figure for covariance_plots.m
covariance_plots.m * - M-file for covariance_generator, covariance_plots
cpot.m * - UNKNOWN, Send to Archive?
cross_mat.m * - Sparse cross product matrix good for matrix equivalent operation
crossprod.m * - Cross product between two sets, each set with three columns
curvature_cortex.m * - calculates cortex curvature
data_manager.fig GUI figure for data_manager.m, bst_static_taskbar.m, extract_channels.m, and others
data_manager.m * - Edit/select database, subjects, studies, datasets, build headmodels, import data.
data_selector.fig GUI figure for bst_sourceimaging.m, data_selector_cb.m, parametric_estimation.m
data_selector_cb.m * - Callback function to setup and execute inverse techniques
database_manager.fig GUI figure for database_manager.m, data_manager.m
database_manager.m * - GUI to edit the User Databases and select one
dataplot.fig GUI figure for bst_imaging_display.m, bst_static_taskbar.m, bst_wavedata_display.m, and others
dataplot_cb.m * - : Callback switchyard for the DATAViewer Tool
dense2sparse_normals2.m M-file has no help text
depthgauge.m * - Make a depthgauge for measuring depth
dip.m * - UNKNOWN, move to archive?
dist_sph.m * - FMINS distance function used to minimize the fit to a sphere
dlegpoly.m * - Evaluate the first N Legendre polynomials
dotprod.m * - Dot product of two vectors (deprecated)
ds2brainstorm.m * - Convert a DS CTF dataset into BrainStorm format
eeg2bs.m * - (fnamein,fnameout,type,channel)
eeg_bem.m * - Calculate the electric potential , BEM approach, arbitrary orientation
eeg_load_scan3avg.m * - Read a NeuroScan 3.x AVG File
eeg_sph.m * - Calculate the electric potential , spherical head, arbitrary orientation
elpos2bs.m * - this function converts electrode position files into BrainStorm Channel format
embedding.m * - computing the approximate embedding surface
engstr.m * - create a string for the number in engineering format
extract_channels.m * - Extract the channels to be used in this particular run
extract_ctf_markers.m * - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
faces_connectivity.m * - Generate the connections of faces to a vertex
fidufit.m * - (overwrite succinct one line summary here)
fidufit.mat Mat-file
file_selection_win.fig GUI figure for file_selection_win.m, bst_mriviewer.m, dataplot_cb.m, and others
file_selection_win.m * - Application M-file for file_selection_win.fig
filter_win.m M-file has no help text
filter_win.mat Mat-file
filterGUI.fig GUI figure for filterGUI.m, dataplot_cb.m
filterGUI.m * - M-file for filterGUI.fig
find_brainstorm_files.m * - Find BrainStorm subjects or study files, create Menu
find_brainstorm_structure.m * - Find all of the available files with a subject or study
find_mfiles.m * - Find m-files that open a particular figure handle or the GCF
find_subdir.m * - Find all subdirectories in a BrainStorm path
findclosest.m * - Find entries of closest elements between two vectors
fronorm.m * - Fast calculation of the Frobenius Norm of a Matrix
gain_interp.m * - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
generic_listbox_win.fig GUI figure for importdata.m, subject_editor.m
genpath2cell.m * - convert path or generated path string into cell array
geom100.mat Mat-file
get_channel.m * - Get the Channel information associated with a particular data file
get_gain.m * - Get a set of source foward fields from a .bin gain matrix file
get_user_directory.m * - Get the user's root directory information
ginput2.m * - Graphical input from mouse.
good_channel.m * - Extract channels of a given type
grayish.m * - % gray out the lower end of a spectrum for less severe palette
gridmaker.m * - 3D regular gridding of surface envelope
hanning_window.m * - Calculate the hanning window function for n points
headmodeler_gui.fig GUI figure for headmodeler_gui.m, bst_static_taskbar.m, data_manager.m, and others
headmodeler_gui.m * - Application M-file to build head models
help_data_bststudy.m * - Information on database files of type 'bststudy'
help_data_bstsubject.m * - Information on database files of type 'bstsubject'
help_data_channel.m * - Information on database files of type 'channel'
help_data_data.m * - Information on database files of type 'data'
help_data_headmodel.m * - Information on database files of type 'headmodel'
help_data_image.m * - Information on database files of type 'image'
help_data_raw.m * - Information on database files of type 'raw'
help_data_results.m * - Information on database files of type 'results'
help_data_tess.m * - Information on database files of type 'tess'
help_data_triconn.m * - Information on database files of type 'triconn'
help_data_vertconn.m * - Information on database files of type 'vertconn'
help_database_list.m * - Explain the database used by BrainStorm
help_editing_brainstorm.m * - Information on how to update and edit your version of BrainStorm
help_fig_bem_param_select.m * - Information on figure file 'bem_param_select'
help_fig_bst_message_window.m * - Information on figure file 'bst_message_window'
help_fig_bst_splashscreen.m * - Information on figure file 'bst_splashscreen'
help_fig_bst_static_taskbar.m * - Information on figure file 'bst_static_taskbar'
help_fig_channel_select.m * - Information on figure file 'channel_select'
help_fig_chi_pdf_fit.m * - Information on figure file 'chi_pdf_fit'
help_fig_covariance_generator.m * - Information on figure file 'covariance_generator'
help_fig_covariance_plots.m * - Information on figure file 'covariance_plots'
help_fig_data_manager.m * - Information on figure file 'data_manager'
help_fig_data_selector.m * - Information on figure file 'data_selector'
help_fig_database_manager.m * - Information on figure file 'database_manager'
help_fig_dataplot.m * - Information on figure file 'dataplot'
help_fig_generic_listbox_win.m * - Information on figure file 'generic_listbox_win'
help_fig_headmodeler_gui.m * - Information on figure file 'headmodeler_gui'
help_fig_help_manager.m * - Information on figure file 'help_manager'
help_fig_importdata.m * - Information on figure file 'importdata'
help_fig_layout_manager.m * - Information on figure file 'layout_manager'
help_fig_least_squares_parameters.m * - Information on figure file 'least_squares_parameters'
help_fig_listbox_win.m * - Information on figure file 'listbox_win'
help_fig_listchan.m * - Information on figure file 'listchan'
help_fig_manage_corticalscouts.m * - Information on figure file 'manage_corticalscouts'
help_fig_map_single.m * - Information on figure file 'map_single'
help_fig_mapping.m * - Information on figure file 'mapping'
help_fig_markers_select.m * - Information on figure file 'markers_select'
help_fig_minnorm_parameters.m * - Information on figure file 'minnorm_parameters'
help_fig_mri_read_tool.m * - Information on figure file 'mri_read_tool'
help_fig_mri_scan_params.m * - Information on figure file 'mri_scan_params'
help_fig_mribox.m * - Information on figure file 'mribox'
help_fig_parametric_estimation.m * - Information on figure file 'parametric_estimation'
help_fig_pcs_params.m * - Information on figure file 'pcs_params'
help_fig_rap_music_parameters.m * - Information on figure file 'rap_music_parameters'
help_fig_rap_parameters.m * - Information on figure file 'rap_parameters'
help_fig_results_time_series.m * - Information on figure file 'results_time_series'
help_fig_results_update_gui.m * - Information on figure file 'results_update_gui'
help_fig_results_visualization.m * - Information on figure file 'results_visualization'
help_fig_select_folder.m * - Information on figure file 'select_folder'
help_fig_set_dataviewing_parameters.m * - Information on figure file 'set_dataviewing_parameters'
help_fig_set_sourceviewing_parameters.m * - Information on figure file 'set_sourceviewing_parameters'
help_fig_show_signal_decomposition.m * - Information on figure file 'show_signal_decomposition'
help_fig_simulator.m * - Information on figure file 'simulator'
help_fig_simulator_mri.m * - Information on figure file 'simulator_mri'
help_fig_sourceimaging.m * - Information on figure file 'sourceimaging'
help_fig_sourceimaging_parameters.m * - Information on figure file 'sourceimaging_parameters'
help_fig_study_editor.m * - Information on figure file 'study_editor'
help_fig_subject_editor.m * - Information on figure file 'subject_editor'
help_fig_taskbar.m * - Information on figure file 'taskbar'
help_fig_tessellation_handler.m * - Information on figure file 'tessellation_handler'
help_fig_tessellation_select.m * - Information on figure file 'tessellation_select'
help_fig_tessellation_window.m * - Information on figure file 'tessellation_window'
help_fig_timeseries.m * - Information on figure file 'timeseries'
help_fig_view_manager.m * - Information on figure file 'view_manager'
help_fig_visu_maps.m * - Information on figure file 'visu_maps'
help_fig_wave_single.m * - Information on figure file 'wave_single'
help_fig_web_pages.m * - Information on figure file 'web_pages'
help_fig_zscore_gui.m * - Information on figure file 'zscore_gui'
help_figure_list.m * - Explain the figures used by BrainStorm
help_manager.fig GUI figure for help_manager.m, bst_static_taskbar.m
help_manager.m * - Application M-file for help_manager.fig
help_pref_currentdata.m * - Preference information on structure of 'CurrentData'
help_pref_dateofagreement.m * - Preference information on structure of 'DateofAgreement'
help_pref_defaultsubject.m * - Preference information on structure of 'DefaultSubject'
help_pref_iuserdatabase.m * - Preference information on structure of 'iUserDataBase'
help_pref_layout.m * - Preference information on structure of 'Layout'
help_pref_studies.m * - Preference information on structure of 'Studies'
help_pref_studysubject.m * - Preference information on structure of 'StudySubject'
help_pref_subjects.m * - Preference information on structure of 'Subjects'
help_pref_usercurrentdata.m * - Preference information on structure of 'UserCurrentData'
help_pref_userdatabase.m * - Preference information on structure of 'UserDataBase'
help_pref_version.m * - Preference information on structure of 'Version'
help_preference_list.m * - Explain the preferences used by BrainStorm
hrow_linear.m * - Compute row in BEM geometry matrix for linear collocation
hs_err_pid2684.log Document file
ihot.mat Mat-file
importdata.fig GUI figure for importdata.m, data_manager.m, ds2brainstorm.m, and others
importdata.m * - Case Switchyard for importing data from major MEG and EEG systems
inorcol.m * - Compute the (pseudo)inverse of the column norms of matrix Mat
interp_mail.m * - (French) Interpolate coordinates of the "maillage"
kl_galerkin.m * - Galerking kernel for BEM of linear model
kl_gram.m * - Kernel computation used in bem_xfer
layout_manager.fig GUI figure for layout_manager.m, bst_static_taskbar.m
layout_manager.m * - Application M-file to manage the window layout
lcmvbf.fig GUI figure for lcmvbf.m, bst_sourceimaging.m, dataplot_cb.m
lcmvbf.m * - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
leaflet.m * - (overwrite succinct one line summary here)
leaflet.mat Mat-file
least_squares_fit.m * - multiple dipole fit using fminsearch
least_squares_parameters.fig GUI figure for data_selector_cb.m, least_squares_parameters_cb.m, parametric_estimation.m
least_squares_parameters_cb.m * - least_squares GUI setup and execution
listbox_win.fig GUI figure for importdata.m, subject_editor.m
listchan.fig GUI figure for dataplot_cb.m
load_brainstorm_file.m * - load or try to find and load the BrainStorm file.
load_BsTMRI.m * - Load BrainStorm MRI format
load_fif_apos.m * - Load in position information from Neuromag 122 ".apos" file
load_fif_asc.m * - Load data from Neuromag 122 .fif file converted to ascii
load_raw.m * - Read a BrainStorm "raw" format (.txt or .raw) matrix
load_smf.m * - Load a simply written SMF file into the faces vertices structure
logobrainstorm.jpg Figure file
make_contents.mat Mat-file
make_default_database.m * - Confirm or Create a default database, default study, default subject
make_default_study.m * - Create simulated default data and link to a simulated subject
make_default_subject.m * - Make a brainstormsubject and simulated MRI in a folder
makeuswait.m * - change the figure pointer according to action
manage_corticalscouts.fig GUI figure for manage_corticalscouts.m, dataplot_cb.m
manage_corticalscouts.m * - Application M-file for manage_corticalscouts.fig
map_single.fig GUI figure for dataplot_cb.m
mapping.fig GUI figure for bst_imaging_display.m, bst_mriviewer.m, bst_wavedata_display.m, and others
markers_select.fig GUI figure with unknown calls
mby3check.m * - Check to see if matrix is m by 3 or 3 by m.
mby6check.m * - Check to see if matrix is m by 6 or 6 by m.
meg4read.m * - READ CTF MEG4 file format
meg4write.m * - WRITE CTF MEG4 file format
meg_bem.m * - Calculate the mag field, BEM approach, arbitrary orientation
mes.m * - (overwrite succinct one line summary here)
mesh2brainstorm.m * - Import .mesh tessellation files (BrainVisa interchange)
minnorm.m * - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
minnorm_parameters.fig GUI figure for data_selector_cb.m, minnorm_parameters_cb.m
minnorm_parameters_cb.m * - Minimum Norm GUI setup and execution
modulo.m * - Compute the modulo
montreal_data_create.m * - Read landmarks from the Montreal Phantom and create simulated data
mri2scs.m * - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
mri_parameters.fig GUI figure for mri_parameters.m, bst_mriviewer.m
mri_parameters.m * - Application M-file for mri_parameters.fig
mri_read_tool.fig GUI figure for mri_read_tool.m, bst_static_taskbar.m, make_default_subject.m, and others
mri_read_tool.m * - AOS Version Application M-file to read in MRI and manipulate
mri_scan_params.fig GUI figure for mri_read_tool.m
mri_scan_params.m M-file has no help text
mribox.fig GUI figure for mritool_cb.m
mritool_cb.m * - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
muopt.m * - Quasi-optimality criterion for choosing the regularization parameter.
mutincomp.m * - Mutual incompatibility among checkboxes and radiobuttons
norcol.m * - (French) squared sum of each column in a matrix
norlig.m * - (French) Norm of the rows of a matrix
nowzooming.m * - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
offset.m * - each column in inmat such that a plot(outmat) looks good.
os_meg.m * - Calculate the (overlapping) sphere models for MEG
overlapping_sphere.m * - Create overlapping spheres for E/MEG channels.
overlapping_sphere_fmins.m * - for use with OVERLAPPING_SPHERE
parametric_estimation.fig GUI figure for parametric_estimation.m, bst_static_taskbar.m, dataplot_cb.m, and others
parametric_estimation.m * - GUI for selecting data segments and subspaces prior to estimation
patch2tess.m M-file has no help text
patch_swell.m * - enlarge a patch by appending the next set of adjacent vertices
pcs_params.fig GUI figure for pcs_params.m, bst_mriviewer.m, mri_read_tool.m
pcs_params.m * - Application M-file to set the parameters of the patient coordinates
phantom_channel_assignment.fig GUI figure for phantom_channel_assignment.m, tess_align_tool.m
phantom_channel_assignment.m * - Application M-file for phantom_channel_assignment.fig
pleg.m * - Used in CPOT, Legendre polynomials
plot3d.m * - 'plot3' the given three column data
plot_dipole.m * - (r,n,s,c)
plot_patch.m * - plots a vertex or face and its neighbors
prepfig.m * - Prepare figure
qslim.m * - Mesh simplification, wrapper function for Garland's QSLIM executable program
rap_music_parameters.fig GUI figure for rap_music_parameters.m, bst_static_taskbar.m, dataplot_cb.m, and others
rap_music_parameters.m * - Application M-file for rap_music_parameters.fig
rapmusic_gui.m * - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
ray_intersect.m * - find intersection of a ray with a set of faces
read_besa.m * - (overwrite succinct one line summary here)
read_ctf_mri.m * - Read CTF MRI format (Version 2.1)
read_gain.m * - Extract parts or a compete gain matrix from .bin binay gain file
readdfs.m * - (overwrite succinct one line summary here)
readdsgl.m * - Loads a BrainSuite .dsgl format tessellation file.
readmarkerfile_ctf.m * - Read marker information from CTF MarkerFile.mrk
readme.m * - What's New in Each Revision of BrainStorm 2.0 (Alpha)
readRaw.m * - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
regcheck.m * - Check the regularization tag
regsubspace.m * - Determine the subspace based on the regularization method
results_time_series.fig GUI figure for results_time_series.m, rapmusic_gui.m
results_time_series.m * - Application M-file for results_time_series.fig
results_update.m * - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
results_update_gui.fig GUI figure for results_update.m
results_visualization.fig GUI figure for results_visualization.m, bst_static_taskbar.m, rapmusic_gui.m, and others
results_visualization.m * - Application M-file View the results of source modeling
rownorm.m * - Calculate the L2 norm of each row of a matrix
save_fieldnames.m * - Save just the fieldnames of a structure to a mat-file
save_raw.m * - Save out a matrix in BrainStorm "raw" format, based on extension
save_smf.m * - Save out a file in a simple form of the SMF format
scs2mri.m * - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
select_folder.fig GUI figure for select_folder.m, database_manager.m
select_folder.m * - Application M-file for bst_SelectFolder.fig
sensor_122.m * - Return the Neuromag 122 information
sensor_axial.m * - Generate axial gradiometers
sensor_planar.m * - Generate planar gradiometers
sensor_ring.m * - Generate rings of sensors about a sphere roughly uniformly spaced.
sensor_spacing.m * - generate sites roughly evenly spaced about a hemisphere.
separation.m * - Splitting the brain into 2 parts
set_dataviewing_parameters.fig GUI figure for dataplot_cb.m
set_sourceviewing_parameters.fig GUI figure for set_sourceviewing_parameters.m, dataplot_cb.m
set_sourceviewing_parameters.m * - Application M-file for set_sourceviewing_parameters.fig
shepards.m * - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
show_signal_decomposition.fig GUI figure for show_signal_decomposition.m
show_signal_decomposition.m * - Application M-file for show_signal_decomposition.fig
simulator.fig GUI figure for simulator.m, bst_static_taskbar.m, make_default_study.m, and others
simulator.m * - Application M-file for simulator.fig
simulator_mri.fig GUI figure for simulator_mri.m, bst_static_taskbar.m, make_default_subject.m
simulator_mri.m * - Application M-file to make a simulated spherical MRI
smooth_cortex.m * - Smoothes tesselation
solid_angle2.m * - Solid angle of a viewed triangle
sort_key.m * - Sort with column keys
source_grid.m * - generate variable grid of possible source locations
source_grids.m * - Generate source grids for parametric model searches
source_tess.m * - generate variable grid of possible source locations
sourceimaging.fig GUI figure for sourceimaging.m, bst_sourceimaging.m, bst_static_taskbar.m, and others
sourceimaging.m * - Main switch to source imaging routines
sourceimaging_parameters.fig GUI figure with unknown calls
sph_rphtestgrid2.mat Mat-file
sph_rphtestgrid3.mat Mat-file
str2mat0.m * - (Deprecated) Form text matrix from individual strings.
str_repeater.m * - Repeat string format and separator to display data
study_editor.fig GUI figure for study_editor.m, data_manager.m, importdata.m
study_editor.m * - GUI to edit the BrainStorm Study information, case switchyard
subcorr_gui.m * - Subcorr function custom to the gui features
subject_editor.fig GUI figure for subject_editor.m, bst_static_taskbar.m, data_manager.m, and others
subject_editor.m * - GUI to edit the BrainStorm Subject information, case switchyard
surf2vol_interp.m * - (overwrite succinct one line summary here)
svd0.m * - Economy SVD in both U and V, S returned sparse diagonal
tess_align_tool.fig GUI figure for tess_align_tool.m, subject_editor.m
tess_align_tool.m * - Application M-file for tess_align_tool.fig
tesselate.m * - tesselate based on the sensor_ring program
tessellation_handler.fig GUI figure for tessellation_handler.m, set_sourceviewing_parameters.m
tessellation_handler.m * - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
tessellation_outwards.m * - Ensure that tessellation ordering is "outwards"
tessellation_stats.m * - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
tessellation_window.fig GUI figure for bst_imaging_display.m, dataplot_cb.m, manage_corticalscouts.m, and others
togglebuttoncolor.m * - : change button color of toggle button
toggleface.m * - Toggle the faces and edges as invisible
togglelight.m * - toggle the lighting flat or phong
toolbox_cross_ref.mat Mat-file
trans_matrix.m * - calculate BEM transfer matrices for EEG and MEG
transform.m * - Transform coordinates between PCS and MRI
tri2brainstorm.m * - Read .tri file into BrainStorm format
tri_area.m * - Find areas of all triangles
tri_interp.m * - Compute the interpolation matrix from a cortical tessellation to the MRI volume
vec.m * - Lexicographical ordering of a matrix, A(:).
vertices_connectivity.m * - Generate the connections between vertices
view_surface.m * - Convenient function to consistently plot surfaces
visu_maps.fig GUI figure with unknown calls
warp_everything_bst.m WARP_EVERYTHING - (summary line here)
wave_single.fig GUI figure with unknown calls
waves_multi.m M-file has no help text
waves_multi.mat Mat-file
web_pages.fig GUI figure for web_pages.m, bst_static_taskbar.m
web_pages.m * - Listbox of relevant BrainStorm web pages and email addresses
weighting_scalar.m * - For use with Overlapping Sphere
windclf.m * - Reset and clear the figure, retaining the NAME property
windfind.m * - Find or create a particular window using it's NAME property
zhang_fit.m * - Compute 'Berg' parameters for EEG multilayer sphere
zscore_gui.fig GUI figure for zscore_gui.m, dataplot_cb.m
zscore_gui.m * - : management of zscore visualization
Category: Unknown Category
bst_cactivcmap.mat Mat-file
common_vertices.m M-file has no help text
fidufit.mat Mat-file
geom100.mat Mat-file
sph_rphtestgrid2.mat Mat-file
sph_rphtestgrid3.mat Mat-file
toolbox_cross_ref.mat Mat-file
Category: Missing in Toolbox
dense2sparse_normals2.m M-file has no help text
filter_win.m M-file has no help text
filter_win.mat Mat-file
hs_err_pid2684.log Document file
minnorm_parameters.fig GUI figure for data_selector_cb.m, minnorm_parameters_cb.m
mri_scan_params.fig GUI figure for mri_read_tool.m
mri_scan_params.m M-file has no help text
patch2tess.m M-file has no help text
waves_multi.m M-file has no help text
waves_multi.mat Mat-file
Category: Archive
cpot.m * - UNKNOWN, Send to Archive?
mes.m * - (overwrite succinct one line summary here)
pleg.m * - Used in CPOT, Legendre polynomials
prepfig.m * - Prepare figure
surf2vol_interp.m * - (overwrite succinct one line summary here)
Matlab files in this Directory
aic_mdl AIC_MDL - Calculate Information Theoretic Criteria for data dimensionality
avw2brainstorm AVW2BRAINSTORM - : Converts an AVW MRI structure (from D. Weber's EEGToolbox) to BRAINSTORM MRI format
bem_gain BEM_GAIN - Computes the EEG/MEG forward/gain matrix associated with a set of grid points
bem_kernel BEM_KERNEL - computes kernel matrices for EEG and MEG
bem_xfer BEM_XFER - Computation of the MEG and/or EEG BEM transfer matrices
berg BERG - PARAMETER CALCULATION FOR EEG MULTILAYER SPHERICAL FORWARD MODEL (berg.m)
bestfitsph BESTFITSPH - Find best fitting sphere
blk_diag BLK_DIAG - Make or extract a sparse block diagonal matrix
blk_lex BLK_LEX - Lexicographically order the submatrices in A
brainstorm BRAINSTORM - Go to the BrainStorm home web page
brainstorm_filt BRAINSTORM_FILT - Zero-phase filter dedicated to multi-channel MEG and EEG data
brainstorm_reset BRAINSTORM_RESET - Clear Matlab BrainStorm preferences, remove default data
browse_study_folder BROWSE_STUDY_FOLDER - Find all *brainstormstudy.mat files in a directory tree
bstscript_ForwardInverse_basicBSTSCRIPT_FORWARDINVERSE_BASIC - Basic Head Modelling and Source Imaging BrainStorm Script
bst_color_scheme BST_COLOR_SCHEME - apply the BrainStorm color, font, size scheme to the figure
bst_extractmarkersctfBST_EXTRACTMARKERSCTF - Extract signal block from a .ds CTF data set
bst_headmodeler BST_HEADMODELER - Solution to the MEG/EEG forward problem
bst_imaging_display BST_IMAGING_DISPLAY - : display utility for cortical distributed source imaging
bst_layout BST_LAYOUT - Manage all BST windows in a standard layout
bst_message_window BST_MESSAGE_WINDOW - Application M-file for bst_message_window.fig, with NON CALLBACKS
bst_mriviewer BST_MRIVIEWER - Application M-file for bst_mriviewer.fig
bst_readmarkerfilectfBST_READMARKERFILECTF - read_markerf reads the CTF markerfile MarkerFile.mrk
bst_sourceimaging BST_SOURCEIMAGING - Command line call to source imaging routines
bst_splashscreen BST_SPLASHSCREEN - GUI app for license information and agreement
bst_static_taskbar BST_STATIC_TASKBAR - BrainStorm's primary taskbar always visible
bst_wavedata_displayBST_WAVEDATA_DISPLAY - Various ways of loooking at time series
bst_win_manager BST_WIN_MANAGER - GUI Window management for BrainStorm
carto_sensors CARTO_SENSORS - (Rcoils,v);
carto_sph CARTO_SPH - (sensloc,v,center)
catci CATCI - computing color coding for activation on the vertices
closest CLOSEST - Find point in one array closest to point in another array
colnorm COLNORM - Calculate L2 norm for each column of a matrix and normalize
contents BrainStorm Toolbox
contraste CONTRASTE - computing the colormap coding deepness
covariance_plots COVARIANCE_PLOTS - M-file for covariance_generator, covariance_plots
cpot CPOT - UNKNOWN, Send to Archive?
crossprod CROSSPROD - Cross product between two sets, each set with three columns
cross_mat CROSS_MAT - Sparse cross product matrix good for matrix equivalent operation
curvature_cortex CURVATURE_CORTEX - calculates cortex curvature
c_activ C_ACTIV - Finding a colormap to code deepness and activation
database_manager DATABASE_MANAGER - GUI to edit the User Databases and select one
dataplot_cb DATAPLOT_CB - : Callback switchyard for the DATAViewer Tool
data_manager DATA_MANAGER - Edit/select database, subjects, studies, datasets, build headmodels, import data.
data_selector_cb DATA_SELECTOR_CB - Callback function to setup and execute inverse techniques
depthgauge DEPTHGAUGE - Make a depthgauge for measuring depth
dip DIP - UNKNOWN, move to archive?
dist_sph DIST_SPH - FMINS distance function used to minimize the fit to a sphere
dlegpoly DLEGPOLY - Evaluate the first N Legendre polynomials
dotprod DOTPROD - Dot product of two vectors (deprecated)
ds2brainstorm DS2BRAINSTORM - Convert a DS CTF dataset into BrainStorm format
eeg2bs EEG2BS - (fnamein,fnameout,type,channel)
eeg_bem EEG_BEM - Calculate the electric potential , BEM approach, arbitrary orientation
eeg_load_scan3avg EEG_LOAD_SCAN3AVG - Read a NeuroScan 3.x AVG File
eeg_sph EEG_SPH - Calculate the electric potential , spherical head, arbitrary orientation
elpos2bs ELPOS2BS - this function converts electrode position files into BrainStorm Channel format
embedding EMBEDDING - computing the approximate embedding surface
engstr ENGSTR - create a string for the number in engineering format
extract_channels EXTRACT_CHANNELS - Extract the channels to be used in this particular run
extract_ctf_markers EXTRACT_CTF_MARKERS - Extract signal block from a .ds CTF data set based on the Markers information in the Markerfile
faces_connectivity FACES_CONNECTIVITY - Generate the connections of faces to a vertex
fidufit FIDUFIT - (overwrite succinct one line summary here)
file_selection_win FILE_SELECTION_WIN - Application M-file for file_selection_win.fig
filterGUI FILTERGUI - M-file for filterGUI.fig
findclosest FINDCLOSEST - Find entries of closest elements between two vectors
find_brainstorm_filesFIND_BRAINSTORM_FILES - Find BrainStorm subjects or study files, create Menu
find_brainstorm_structureFIND_BRAINSTORM_STRUCTURE - Find all of the available files with a subject or study
find_mfiles FIND_MFILES - Find m-files that open a particular figure handle or the GCF
find_subdir FIND_SUBDIR - Find all subdirectories in a BrainStorm path
fronorm FRONORM - Fast calculation of the Frobenius Norm of a Matrix
gain_interp GAIN_INTERP - Gain matrix interpolation from a set of pre-computed forward fields defined over grid points in 3D space
genpath2cell GENPATH2CELL - convert path or generated path string into cell array
get_channel GET_CHANNEL - Get the Channel information associated with a particular data file
get_gain GET_GAIN - Get a set of source foward fields from a .bin gain matrix file
get_user_directory GET_USER_DIRECTORY - Get the user's root directory information
ginput2 GINPUT2 - Graphical input from mouse.
good_channel GOOD_CHANNEL - Extract channels of a given type
grayish GRAYISH - % gray out the lower end of a spectrum for less severe palette
gridmaker GRIDMAKER - 3D regular gridding of surface envelope
hanning_window HANNING_WINDOW - Calculate the hanning window function for n points
headmodeler_gui HEADMODELER_GUI - Application M-file to build head models
help_database_list HELP_DATABASE_LIST - Explain the database used by BrainStorm
help_data_bststudy HELP_DATA_BSTSTUDY - Information on database files of type 'bststudy'
help_data_bstsubjectHELP_DATA_BSTSUBJECT - Information on database files of type 'bstsubject'
help_data_channel HELP_DATA_CHANNEL - Information on database files of type 'channel'
help_data_data HELP_DATA_DATA - Information on database files of type 'data'
help_data_headmodel HELP_DATA_HEADMODEL - Information on database files of type 'headmodel'
help_data_image HELP_DATA_IMAGE - Information on database files of type 'image'
help_data_raw HELP_DATA_RAW - Information on database files of type 'raw'
help_data_results HELP_DATA_RESULTS - Information on database files of type 'results'
help_data_tess HELP_DATA_TESS - Information on database files of type 'tess'
help_data_triconn HELP_DATA_TRICONN - Information on database files of type 'triconn'
help_data_vertconn HELP_DATA_VERTCONN - Information on database files of type 'vertconn'
help_editing_brainstormHELP_EDITING_BRAINSTORM - Information on how to update and edit your version of BrainStorm
help_figure_list HELP_FIGURE_LIST - Explain the figures used by BrainStorm
help_fig_bem_param_selectHELP_FIG_BEM_PARAM_SELECT - Information on figure file 'bem_param_select'
help_fig_bst_message_windowHELP_FIG_BST_MESSAGE_WINDOW - Information on figure file 'bst_message_window'
help_fig_bst_splashscreenHELP_FIG_BST_SPLASHSCREEN - Information on figure file 'bst_splashscreen'
help_fig_bst_static_taskbarHELP_FIG_BST_STATIC_TASKBAR - Information on figure file 'bst_static_taskbar'
help_fig_channel_selectHELP_FIG_CHANNEL_SELECT - Information on figure file 'channel_select'
help_fig_chi_pdf_fitHELP_FIG_CHI_PDF_FIT - Information on figure file 'chi_pdf_fit'
help_fig_covariance_generatorHELP_FIG_COVARIANCE_GENERATOR - Information on figure file 'covariance_generator'
help_fig_covariance_plotsHELP_FIG_COVARIANCE_PLOTS - Information on figure file 'covariance_plots'
help_fig_database_managerHELP_FIG_DATABASE_MANAGER - Information on figure file 'database_manager'
help_fig_dataplot HELP_FIG_DATAPLOT - Information on figure file 'dataplot'
help_fig_data_managerHELP_FIG_DATA_MANAGER - Information on figure file 'data_manager'
help_fig_data_selectorHELP_FIG_DATA_SELECTOR - Information on figure file 'data_selector'
help_fig_generic_listbox_winHELP_FIG_GENERIC_LISTBOX_WIN - Information on figure file 'generic_listbox_win'
help_fig_headmodeler_guiHELP_FIG_HEADMODELER_GUI - Information on figure file 'headmodeler_gui'
help_fig_help_managerHELP_FIG_HELP_MANAGER - Information on figure file 'help_manager'
help_fig_importdata HELP_FIG_IMPORTDATA - Information on figure file 'importdata'
help_fig_layout_managerHELP_FIG_LAYOUT_MANAGER - Information on figure file 'layout_manager'
help_fig_least_squares_parametersHELP_FIG_LEAST_SQUARES_PARAMETERS - Information on figure file 'least_squares_parameters'
help_fig_listbox_winHELP_FIG_LISTBOX_WIN - Information on figure file 'listbox_win'
help_fig_listchan HELP_FIG_LISTCHAN - Information on figure file 'listchan'
help_fig_manage_corticalscoutsHELP_FIG_MANAGE_CORTICALSCOUTS - Information on figure file 'manage_corticalscouts'
help_fig_mapping HELP_FIG_MAPPING - Information on figure file 'mapping'
help_fig_map_single HELP_FIG_MAP_SINGLE - Information on figure file 'map_single'
help_fig_markers_selectHELP_FIG_MARKERS_SELECT - Information on figure file 'markers_select'
help_fig_minnorm_parametersHELP_FIG_MINNORM_PARAMETERS - Information on figure file 'minnorm_parameters'
help_fig_mribox HELP_FIG_MRIBOX - Information on figure file 'mribox'
help_fig_mri_read_toolHELP_FIG_MRI_READ_TOOL - Information on figure file 'mri_read_tool'
help_fig_mri_scan_paramsHELP_FIG_MRI_SCAN_PARAMS - Information on figure file 'mri_scan_params'
help_fig_parametric_estimationHELP_FIG_PARAMETRIC_ESTIMATION - Information on figure file 'parametric_estimation'
help_fig_pcs_params HELP_FIG_PCS_PARAMS - Information on figure file 'pcs_params'
help_fig_rap_music_parametersHELP_FIG_RAP_MUSIC_PARAMETERS - Information on figure file 'rap_music_parameters'
help_fig_rap_parametersHELP_FIG_RAP_PARAMETERS - Information on figure file 'rap_parameters'
help_fig_results_time_seriesHELP_FIG_RESULTS_TIME_SERIES - Information on figure file 'results_time_series'
help_fig_results_update_guiHELP_FIG_RESULTS_UPDATE_GUI - Information on figure file 'results_update_gui'
help_fig_results_visualizationHELP_FIG_RESULTS_VISUALIZATION - Information on figure file 'results_visualization'
help_fig_select_folderHELP_FIG_SELECT_FOLDER - Information on figure file 'select_folder'
help_fig_set_dataviewing_parametersHELP_FIG_SET_DATAVIEWING_PARAMETERS - Information on figure file 'set_dataviewing_parameters'
help_fig_set_sourceviewing_parametersHELP_FIG_SET_SOURCEVIEWING_PARAMETERS - Information on figure file 'set_sourceviewing_parameters'
help_fig_show_signal_decompositionHELP_FIG_SHOW_SIGNAL_DECOMPOSITION - Information on figure file 'show_signal_decomposition'
help_fig_simulator HELP_FIG_SIMULATOR - Information on figure file 'simulator'
help_fig_simulator_mriHELP_FIG_SIMULATOR_MRI - Information on figure file 'simulator_mri'
help_fig_sourceimagingHELP_FIG_SOURCEIMAGING - Information on figure file 'sourceimaging'
help_fig_sourceimaging_parametersHELP_FIG_SOURCEIMAGING_PARAMETERS - Information on figure file 'sourceimaging_parameters'
help_fig_study_editorHELP_FIG_STUDY_EDITOR - Information on figure file 'study_editor'
help_fig_subject_editorHELP_FIG_SUBJECT_EDITOR - Information on figure file 'subject_editor'
help_fig_taskbar HELP_FIG_TASKBAR - Information on figure file 'taskbar'
help_fig_tessellation_handlerHELP_FIG_TESSELLATION_HANDLER - Information on figure file 'tessellation_handler'
help_fig_tessellation_selectHELP_FIG_TESSELLATION_SELECT - Information on figure file 'tessellation_select'
help_fig_tessellation_windowHELP_FIG_TESSELLATION_WINDOW - Information on figure file 'tessellation_window'
help_fig_timeseries HELP_FIG_TIMESERIES - Information on figure file 'timeseries'
help_fig_view_managerHELP_FIG_VIEW_MANAGER - Information on figure file 'view_manager'
help_fig_visu_maps HELP_FIG_VISU_MAPS - Information on figure file 'visu_maps'
help_fig_wave_singleHELP_FIG_WAVE_SINGLE - Information on figure file 'wave_single'
help_fig_web_pages HELP_FIG_WEB_PAGES - Information on figure file 'web_pages'
help_fig_zscore_gui HELP_FIG_ZSCORE_GUI - Information on figure file 'zscore_gui'
help_manager HELP_MANAGER - Application M-file for help_manager.fig
help_preference_listHELP_PREFERENCE_LIST - Explain the preferences used by BrainStorm
help_pref_currentdataHELP_PREF_CURRENTDATA - Preference information on structure of 'CurrentData'
help_pref_dateofagreementHELP_PREF_DATEOFAGREEMENT - Preference information on structure of 'DateofAgreement'
help_pref_defaultsubjectHELP_PREF_DEFAULTSUBJECT - Preference information on structure of 'DefaultSubject'
help_pref_iuserdatabaseHELP_PREF_IUSERDATABASE - Preference information on structure of 'iUserDataBase'
help_pref_layout HELP_PREF_LAYOUT - Preference information on structure of 'Layout'
help_pref_studies HELP_PREF_STUDIES - Preference information on structure of 'Studies'
help_pref_studysubjectHELP_PREF_STUDYSUBJECT - Preference information on structure of 'StudySubject'
help_pref_subjects HELP_PREF_SUBJECTS - Preference information on structure of 'Subjects'
help_pref_usercurrentdataHELP_PREF_USERCURRENTDATA - Preference information on structure of 'UserCurrentData'
help_pref_userdatabaseHELP_PREF_USERDATABASE - Preference information on structure of 'UserDataBase'
help_pref_version HELP_PREF_VERSION - Preference information on structure of 'Version'
hrow_linear HROW_LINEAR - Compute row in BEM geometry matrix for linear collocation
importdata IMPORTDATA - Case Switchyard for importing data from major MEG and EEG systems
inorcol INORCOL - Compute the (pseudo)inverse of the column norms of matrix Mat
interp_mail INTERP_MAIL - (French) Interpolate coordinates of the "maillage"
kl_galerkin KL_GALERKIN - Galerking kernel for BEM of linear model
kl_gram KL_GRAM - Kernel computation used in bem_xfer
layout_manager LAYOUT_MANAGER - Application M-file to manage the window layout
lcmvbf LCMVBF - Spatial filtering solution as called from command line or BST_SOURCEIMAGING.M
leaflet LEAFLET - (overwrite succinct one line summary here)
least_squares_fit LEAST_SQUARES_FIT - multiple dipole fit using fminsearch
least_squares_parameters_cbLEAST_SQUARES_PARAMETERS_CB - least_squares GUI setup and execution
load_brainstorm_fileLOAD_BRAINSTORM_FILE - load or try to find and load the BrainStorm file.
load_BsTMRI LOAD_BSTMRI - Load BrainStorm MRI format
load_fif_apos LOAD_FIF_APOS - Load in position information from Neuromag 122 ".apos" file
load_fif_asc LOAD_FIF_ASC - Load data from Neuromag 122 .fif file converted to ascii
load_raw LOAD_RAW - Read a BrainStorm "raw" format (.txt or .raw) matrix
load_smf LOAD_SMF - Load a simply written SMF file into the faces vertices structure
makeuswait MAKEUSWAIT - change the figure pointer according to action
make_default_databaseMAKE_DEFAULT_DATABASE - Confirm or Create a default database, default study, default subject
make_default_study MAKE_DEFAULT_STUDY - Create simulated default data and link to a simulated subject
make_default_subjectMAKE_DEFAULT_SUBJECT - Make a brainstormsubject and simulated MRI in a folder
manage_corticalscoutsMANAGE_CORTICALSCOUTS - Application M-file for manage_corticalscouts.fig
mby3check MBY3CHECK - Check to see if matrix is m by 3 or 3 by m.
mby6check MBY6CHECK - Check to see if matrix is m by 6 or 6 by m.
meg4read MEG4READ - READ CTF MEG4 file format
meg4write MEG4WRITE - WRITE CTF MEG4 file format
meg_bem MEG_BEM - Calculate the mag field, BEM approach, arbitrary orientation
mes MES - (overwrite succinct one line summary here)
mesh2brainstorm MESH2BRAINSTORM - Import .mesh tessellation files (BrainVisa interchange)
minnorm MINNORM - Mininum norm solution as called from command line or BST_SOURCEIMAGING.M
minnorm_parameters_cbMINNORM_PARAMETERS_CB - Minimum Norm GUI setup and execution
modulo MODULO - Compute the modulo
montreal_data_createMONTREAL_DATA_CREATE - Read landmarks from the Montreal Phantom and create simulated data
mri2scs MRI2SCS - Compute the transform to move form the MRI coordinate system (in mm) to the SCS
mritool_cb MRITOOL_CB - OBSOLETE Switchyard corresponding to the OLDER MRITOOL GUI (mribox.fig)
mri_parameters MRI_PARAMETERS - Application M-file for mri_parameters.fig
mri_read_tool MRI_READ_TOOL - AOS Version Application M-file to read in MRI and manipulate
muopt MUOPT - Quasi-optimality criterion for choosing the regularization parameter.
mutincomp MUTINCOMP - Mutual incompatibility among checkboxes and radiobuttons
norcol NORCOL - (French) squared sum of each column in a matrix
norlig NORLIG - (French) Norm of the rows of a matrix
nowzooming NOWZOOMING - WindownButtonDownFcn callbcak for zooming within BST_MRIVIEWER
offset OFFSET - each column in inmat such that a plot(outmat) looks good.
os_meg OS_MEG - Calculate the (overlapping) sphere models for MEG
overlapping_sphere OVERLAPPING_SPHERE - Create overlapping spheres for E/MEG channels.
overlapping_sphere_fminsOVERLAPPING_SPHERE_FMINS - for use with OVERLAPPING_SPHERE
parametric_estimationPARAMETRIC_ESTIMATION - GUI for selecting data segments and subspaces prior to estimation
patch_swell PATCH_SWELL - enlarge a patch by appending the next set of adjacent vertices
pcs_params PCS_PARAMS - Application M-file to set the parameters of the patient coordinates
phantom_channel_assignmentPHANTOM_CHANNEL_ASSIGNMENT - Application M-file for phantom_channel_assignment.fig
pleg PLEG - Used in CPOT, Legendre polynomials
plot3d PLOT3D - 'plot3' the given three column data
plot_dipole PLOT_DIPOLE - (r,n,s,c)
plot_patch PLOT_PATCH - plots a vertex or face and its neighbors
prepfig PREPFIG - Prepare figure
qslim QSLIM - Mesh simplification, wrapper function for Garland's QSLIM executable program
rapmusic_gui RAPMUSIC_GUI - Execute RAPMUSIC using GUI inputs, BrainStorm MMII version
rap_music_parametersRAP_MUSIC_PARAMETERS - Application M-file for rap_music_parameters.fig
ray_intersect RAY_INTERSECT - find intersection of a ray with a set of faces
readdfs READDFS - (overwrite succinct one line summary here)
readdsgl READDSGL - Loads a BrainSuite .dsgl format tessellation file.
readmarkerfile_ctf READMARKERFILE_CTF - Read marker information from CTF MarkerFile.mrk
readme README - What's New in Each Revision of BrainStorm 2.0 (Alpha)
readRaw READRAW - Reads an EGI epoch-marked simple binary format (epoch-marked raw format) file.
read_besa READ_BESA - (overwrite succinct one line summary here)
read_ctf_mri READ_CTF_MRI - Read CTF MRI format (Version 2.1)
read_gain READ_GAIN - Extract parts or a compete gain matrix from .bin binay gain file
regcheck REGCHECK - Check the regularization tag
regsubspace REGSUBSPACE - Determine the subspace based on the regularization method
results_time_series RESULTS_TIME_SERIES - Application M-file for results_time_series.fig
results_update RESULTS_UPDATE - Update of display the source parameters and residuals while RAP-MUSIC or LS is running.
results_visualizationRESULTS_VISUALIZATION - Application M-file View the results of source modeling
rownorm ROWNORM - Calculate the L2 norm of each row of a matrix
save_fieldnames SAVE_FIELDNAMES - Save just the fieldnames of a structure to a mat-file
save_raw SAVE_RAW - Save out a matrix in BrainStorm "raw" format, based on extension
save_smf SAVE_SMF - Save out a file in a simple form of the SMF format
scs2mri SCS2MRI - transform SCS point coordinates (in mm) to MRI coordinate system (in mm)
select_folder SELECT_FOLDER - Application M-file for bst_SelectFolder.fig
sensor_122 SENSOR_122 - Return the Neuromag 122 information
sensor_axial SENSOR_AXIAL - Generate axial gradiometers
sensor_planar SENSOR_PLANAR - Generate planar gradiometers
sensor_ring SENSOR_RING - Generate rings of sensors about a sphere roughly uniformly spaced.
sensor_spacing SENSOR_SPACING - generate sites roughly evenly spaced about a hemisphere.
separation SEPARATION - Splitting the brain into 2 parts
set_sourceviewing_parametersSET_SOURCEVIEWING_PARAMETERS - Application M-file for set_sourceviewing_parameters.fig
shepards SHEPARDS - (X,x,v,n); 3D nearest-neighbor interpolation using Shepard's weighting
show_signal_decompositionSHOW_SIGNAL_DECOMPOSITION - Application M-file for show_signal_decomposition.fig
simulator SIMULATOR - Application M-file for simulator.fig
simulator_mri SIMULATOR_MRI - Application M-file to make a simulated spherical MRI
smooth_cortex SMOOTH_CORTEX - Smoothes tesselation
solid_angle2 SOLID_ANGLE2 - Solid angle of a viewed triangle
sort_key SORT_KEY - Sort with column keys
sourceimaging SOURCEIMAGING - Main switch to source imaging routines
source_grid SOURCE_GRID - generate variable grid of possible source locations
source_grids SOURCE_GRIDS - Generate source grids for parametric model searches
source_tess SOURCE_TESS - generate variable grid of possible source locations
str2mat0 STR2MAT0 - (Deprecated) Form text matrix from individual strings.
str_repeater STR_REPEATER - Repeat string format and separator to display data
study_editor STUDY_EDITOR - GUI to edit the BrainStorm Study information, case switchyard
subcorr_gui SUBCORR_GUI - Subcorr function custom to the gui features
subject_editor SUBJECT_EDITOR - GUI to edit the BrainStorm Subject information, case switchyard
surf2vol_interp SURF2VOL_INTERP - (overwrite succinct one line summary here)
svd0 SVD0 - Economy SVD in both U and V, S returned sparse diagonal
tesselate TESSELATE - tesselate based on the sensor_ring program
tessellation_handlerTESSELLATION_HANDLER - : Basic Viewing of tessellation objects in BrainStorm format; GUI Manager
tessellation_outwardsTESSELLATION_OUTWARDS - Ensure that tessellation ordering is "outwards"
tessellation_stats TESSELLATION_STATS - Calculate statistics of the tesselation and hunt for suspicious faces and vertices
tess_align_tool TESS_ALIGN_TOOL - Application M-file for tess_align_tool.fig
togglebuttoncolor TOGGLEBUTTONCOLOR - : change button color of toggle button
toggleface TOGGLEFACE - Toggle the faces and edges as invisible
togglelight TOGGLELIGHT - toggle the lighting flat or phong
transform TRANSFORM - Transform coordinates between PCS and MRI
trans_matrix TRANS_MATRIX - calculate BEM transfer matrices for EEG and MEG
tri2brainstorm TRI2BRAINSTORM - Read .tri file into BrainStorm format
tri_area TRI_AREA - Find areas of all triangles
tri_interp TRI_INTERP - Compute the interpolation matrix from a cortical tessellation to the MRI volume
vec VEC - Lexicographical ordering of a matrix, A(:).
vertices_connectivityVERTICES_CONNECTIVITY - Generate the connections between vertices
view_surface VIEW_SURFACE - Convenient function to consistently plot surfaces
warp_everything_bst WARP_EVERYTHING - (summary line here)
web_pages WEB_PAGES - Listbox of relevant BrainStorm web pages and email addresses
weighting_scalar WEIGHTING_SCALAR - For use with Overlapping Sphere
windclf WINDCLF - Reset and clear the figure, retaining the NAME property
windfind WINDFIND - Find or create a particular window using it's NAME property
zhang_fit ZHANG_FIT - Compute 'Berg' parameters for EEG multilayer sphere
zscore_gui ZSCORE_GUI - : management of zscore visualization